IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
440	 29.88	-2	473217..473708	-	163	91772522	-	Mbur_0481	-	hypothetical protein
441	 43.35	0	473746..475173	-	475	91772523	-	Mbur_0482	-	divergent AAA ATP
442	 44.05	0	475215..476921	-	568	91772524	-	Mbur_0483	-	N-6 DNA methylase
443	 47.49	+1	477076..479901	-	941	91772525	-	Mbur_0484	-	DEAD/DEAH box helicase-like protein
444	 31.77	-2	480205..480972	+	255	91772526	-	Mbur_0485	-	hypothetical protein
445	 43.95	0	481101..481712	-	203	91772527	-	Mbur_0486	-	ABC proline/glycine betaine transporter, inner membrane subunit
446	 43.55	0	481706..482302	-	198	91772528	-	Mbur_0487	-	ABC proline/glycine betaine transporter, inner membrane subunit
447	 43.68	0	482367..483497	-	376	91772529	-	Mbur_0488	-	glycine betaine/L-proline ABC transporter, ATPase subunit
448	 42.18	0	483579..484505	-	308	91772530	-	Mbur_0489	-	ABC glycine betaine transporter, substrate-binding subunit
449	 44.93	0	484711..485934	-	407	91772531	-	Mbur_0490	-	SufBD
450	 44.00	0	485913..486662	-	249	91772532	-	Mbur_0491	-	ABC transporter, ATPase subunit
451	 33.88	-1	487336..487887	-	183	91772533	-	Mbur_0492	-	hypothetical protein
452	 36.31	-1	488270..488605	-	111	91772534	-	Mbur_0493	-	hypothetical protein
453	 25.93	-2	488844..489113	-	89	91772535	-	Mbur_0494	-	hypothetical protein
454	 37.32	-1	489213..489488	-	91	91772536	-	Mbur_0495	-	hypothetical protein
455	 35.80	-1	489866..490636	-	256	91772537	-	Mbur_0496	-	ABC Fe3+-siderophore transporter, ATPase subunit
456	 38.03	0	490633..491697	-	354	91772538	-	Mbur_0497	-	ABC Fe3+-siderophore transporter, inner membrane subunit
457	 36.20	-1	491735..493477	-	580	91772539	-	Mbur_0498	-	radical SAM family Fe-S protein
458	 36.53	-1	493481..494137	-	218	91772540	-	Mbur_0499	-	UbiE/COQ5 methyltransferase
459	 36.27	-1	494185..495273	-	362	91772541	-	Mbur_0500	-	ABC Fe3+-siderophore transporter, substrate binding subunit
460	 45.55	0	496078..497076	+	332	91772542	-	Mbur_0501	-	ABC glycine betaine/L-proline transporter, ATPase subunit
461	 42.84	0	497080..497910	+	276	91772543	-	Mbur_0502	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
462	 44.56	0	497990..498862	+	290	91772544	-	Mbur_0503	-	ABC glycine betaine/L-proline transporter, substrate-binding subunit
463	 35.93	-1	499489..500334	-	281	91772545	-	Mbur_0504	-	metallophosphoesterase
464	 44.21	0	500775..501896	+	373	91772546	-	Mbur_0505	-	hypothetical protein
465	 42.70	0	503488..504939	-	483	91772547	-	Mbur_0507	-	divergent AAA ATPase
466	 41.86	0	504936..506471	-	511	91772548	-	Mbur_0508	-	restriction modification system DNA specificity subunit
467	 47.26	+1	506614..509370	-	918	91772549	-	Mbur_0509	-	type III restriction enzyme, res subunit
468	 42.59	0	509531..511432	-	633	91772550	-	Mbur_0510	-	Cache sensor signal transduction histidine kinase
469	 37.91	0	511788..511940	+	50	91772551	-	Mbur_0511	-	response regulator
470	 43.19	0	512008..512565	+	185	91772552	-	Mbur_0512	-	XRE family transcriptional regulator
471	 40.66	0	512804..513826	+	340	91772553	-	Mbur_0513	-	hypothetical protein
472	 48.82	+1	514158..515300	+	380	91772554	-	Mbur_0514	-	phosphoserine aminotransferase / L-aspartate aminotransferase
473	 48.60	+1	515316..515780	+	154	91772555	-	Mbur_0515	-	riboflavin synthase
474	 42.14	0	515924..516559	-	211	91772556	-	Mbur_0516	-	hypothetical protein
475	 40.77	0	516836..517198	+	120	91772557	-	Mbur_0517	-	hypothetical protein
476	 31.21	-2	517464..518450	-	328	91772558	-	Mbur_0518	-	hypothetical protein
477	 33.87	-1	519047..519421	+	124	91772559	-	Mbur_0519	-	hypothetical protein
478	 34.60	-1	519957..520745	+	262	91772560	-	Mbur_0520	-	hypothetical protein
479	 38.31	0	520717..520917	-	66	91772561	-	Mbur_0521	-	hypothetical protein
480	 44.15	0	521164..521616	+	150	91772562	-	Mbur_0522	-	hypothetical protein
481	 44.75	0	521831..523345	-	504	91772563	-	Mbur_0523	-	catalase
482	 44.06	0	523731..524588	-	285	91772564	-	Mbur_0524	-	hypothetical protein
483	 44.17	0	526405..528342	+	645	91772565	-	Mbur_0526	-	glycoside hydrolase 15-related
484	 38.18	0	528795..529433	+	212	91772566	-	Mbur_0527	-	multiple antibiotic resistance (MarC)-related proteins
485	 31.60	-2	530827..532095	+	422	91772567	-	Mbur_0529	-	proteinase inhibitor I4, serpin
486	 33.83	-1	534399..535607	+	402	91772568	-	Mbur_0532	-	hypothetical protein
487	 31.73	-2	535635..536195	+	186	91772569	-	Mbur_0533	-	hypothetical protein
488	 34.37	-1	536849..537235	+	128	91772570	-	Mbur_0534	-	hypothetical protein
489	 35.29	-1	537465..538586	-	373	91772571	-	Mbur_0535	-	transposase, IS4
490	 49.83	+1	538750..539658	+	302	91772572	-	Mbur_0536	-	hypothetical protein
491	 47.46	+1	539655..541190	+	511	91772573	-	Mbur_0537	-	thiamine pyrophosphate enzyme-like TPP-binding
492	 36.84	-1	542518..543687	+	389	91772574	-	Mbur_0539	-	transposase
493	 36.11	-1	543924..544103	+	59	91772575	-	Mbur_0540	-	hypothetical protein
494	 35.86	-1	544093..544647	-	184	91772576	-	Mbur_0541	-	hypothetical protein
495	 37.08	-1	544640..544879	-	79	91772577	-	Mbur_0542	-	hypothetical protein
496	 40.20	0	545211..547322	-	703	91772578	-	Mbur_0543	-	hypothetical protein
497	 39.73	0	551107..551622	-	171	91772579	-	Mbur_0544	-	hypothetical protein
498	 37.38	0	551738..552058	+	106	91772580	-	Mbur_0545	-	hypothetical protein
499	 45.77	0	552087..552488	+	133	91772581	-	Mbur_0546	-	hypothetical protein
500	 40.76	0	553655..554314	-	219	91772582	-	Mbur_0547	-	K+ transport systems NAD-binding subunit
501	 42.39	0	554311..555768	-	485	91772583	-	Mbur_0548	-	Trk-type K+ transport systems membrane subunit
502	 42.27	0	558302..558592	+	96	91772584	-	Mbur_0551	-	hypothetical protein
503	 49.68	+1	558693..561053	+	786	91772585	-	Mbur_0552	-	CoB--CoM heterodisulfide reductase subunit A
504	 46.91	+1	561046..562356	+	436	91772586	-	Mbur_0553	-	formylmethanofuran dehydrogenase, subunit F
505	 31.17	-2	562442..562765	-	107	91772587	-	Mbur_0554	-	hypothetical protein
506	 34.88	-1	563335..564108	+	257	91772588	-	Mbur_0555	-	hypothetical protein
507	 40.36	0	564493..564990	+	165	91772589	-	Mbur_0556	-	hypothetical protein
508	 41.60	0	565256..565642	+	128	91772590	-	Mbur_0557	-	resolvase-like protein
509	 47.19	+1	565623..565889	+	88	91772591	-	Mbur_0558	-	hypothetical protein
510	 28.09	-2	566223..566927	+	234	91772592	-	Mbur_0559	-	hypothetical protein
511	 37.55	0	566998..568206	-	402	91772593	-	Mbur_0560	-	CRISPR-associated Cas1 family protein
512	 31.28	-2	568206..569324	-	372	91772594	-	Mbur_0561	-	hypothetical protein
513	 35.21	-1	569532..570170	+	212	91772595	-	Mbur_0562	-	hypothetical protein
514	 34.23	-1	570187..570519	+	110	91772596	-	Mbur_0563	-	hypothetical protein
515	 33.48	-1	570512..573184	+	890	91772597	-	Mbur_0564	-	DNA-directed DNA polymerase B
516	 27.66	-2	573210..574178	-	322	91772598	-	Mbur_0565	-	hypothetical protein
517	 37.79	0	574540..575481	+	313	91772599	-	Mbur_0566	-	transposase, IS4
518	 37.79	0	575915..576856	+	313	91772600	-	Mbur_0567	-	transposase, IS4
519	 35.36	-1	578143..580812	-	889	91772601	-	Mbur_0569	-	DNA-directed DNA polymerase B
520	 34.83	-1	580805..581137	-	110	91772602	-	Mbur_0570	-	hypothetical protein
521	 38.94	0	581150..581791	-	213	91772603	-	Mbur_0571	-	hypothetical protein
522	 31.11	-2	582060..582959	+	299	91772604	-	Mbur_0572	-	hypothetical protein
523	 37.43	0	582959..584155	+	398	91772605	-	Mbur_0573	-	CRISPR-associated Cas1 family protein
524	 33.33	-1	584257..584760	+	167	91772606	-	Mbur_0574	-	hypothetical protein
525	 31.74	-2	584836..585336	+	166	91772607	-	Mbur_0575	-	hypothetical protein
526	 28.06	-2	585575..586864	+	429	91772608	-	Mbur_0576	-	hypothetical protein
527	 33.09	-1	586871..589345	-	824	91772609	-	Mbur_0577	-	DNA-directed DNA polymerase B
528	 32.79	-2	589361..589543	-	60	91772610	-	Mbur_0578	-	hypothetical protein
529	 29.82	-2	589728..589955	-	75	91772611	-	Mbur_0579	-	hypothetical protein
530	 32.71	-2	589948..590586	-	212	91772612	-	Mbur_0580	-	hypothetical protein
531	 36.15	-1	591703..592908	+	401	91772613	-	Mbur_0582	-	CRISPR-associated Cas1 family protein
532	 41.28	0	592968..593747	-	259	91772614	-	Mbur_0583	-	hypothetical protein
533	 37.79	0	594187..595128	-	313	91772615	-	Mbur_0584	-	transposase, IS4
534	 34.95	-1	596233..597342	+	369	91772616	-	Mbur_0585	-	transposase, IS4
535	 43.46	0	597494..597898	+	134	91772617	-	Mbur_0586	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
536	 43.30	0	598004..598264	-	86	91772618	-	Mbur_0587	-	hypothetical protein
537	 40.03	0	599785..600366	+	193	91772619	-	Mbur_0590	-	DNA-3-methyladenine glycosylase I
538	 34.78	-1	600425..600562	-	45	91772620	-	Mbur_0591	-	hypothetical protein
539	 38.57	0	600697..601422	-	241	91772621	-	Mbur_0592	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.