IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
373	 39.29	0	390022..390189	+	55	91772455	-	Mbur_0407	-	hypothetical protein
374	 38.10	0	390193..391326	+	377	91772456	-	Mbur_0408	-	Na+/proline symporter-like protein
375	 35.49	-1	391350..391766	+	138	91772457	-	Mbur_0409	-	hypothetical protein
376	 33.72	-1	393226..393486	+	86	91772458	-	Mbur_0412	-	hypothetical protein
377	 46.13	0	393722..394651	-	309	91772459	-	Mbur_0413	-	cysteine synthase
378	 42.06	0	394703..395665	-	320	91772460	-	Mbur_0414	-	Serine O-acetyltransferase
379	 39.70	0	395813..397273	+	486	91772461	-	Mbur_0415	-	hypothetical protein
380	 40.51	0	397312..398244	-	310	91772462	-	Mbur_0416	-	putative transporter
381	 33.42	-1	398468..399559	-	363	91772463	-	Mbur_0417	-	hypothetical protein
382	 39.57	0	400068..400676	+	202	91772464	-	Mbur_0418	-	hypothetical protein
383	 45.18	0	400945..402843	+	632	91772465	-	Mbur_0419	-	DNA gyrase subunit B
384	 44.65	0	402854..405346	+	830	91772466	-	Mbur_0420	-	DNA gyrase subunit A
385	 48.38	+1	405414..406310	+	298	91772467	-	Mbur_0421	-	pyridoxine biosynthesis protein
386	 46.90	+1	406347..406943	+	198	91772468	-	Mbur_0422	-	glutamine amidotransferase subunit PdxT
387	 38.98	0	407203..408123	-	306	91772469	-	Mbur_0423	-	TM helix protein
388	 38.69	0	408610..408777	+	55	91772470	-	Mbur_0424	-	hypothetical protein
389	 43.82	0	408781..410373	+	530	91772471	-	Mbur_0425	-	Na+/solute symporter
390	 42.10	0	410508..411317	+	269	91772472	-	Mbur_0426	-	hypothetical protein
391	 43.29	0	411402..411833	+	143	91772473	-	Mbur_0427	-	cytidyltransferase-related protein
392	 46.63	+1	411872..413014	-	380	91772474	-	Mbur_0428	-	aspartate aminotransferase
393	 44.12	0	413064..413480	-	138	91772475	ribH	Mbur_0429	-	riboflavin synthase subunit beta
394	 38.30	0	413633..414679	+	348	91772476	-	Mbur_0430	-	K+-dependent Na+/Ca+ exchanger related-protein
395	 44.19	0	414746..417361	-	871	91772477	-	Mbur_0431	-	cation transporting P-type ATPase
396	 40.55	0	418183..418653	-	156	91772478	-	Mbur_0432	-	hypothetical protein
397	 39.81	0	418874..420679	+	601	91772479	-	Mbur_0433	-	hypothetical protein
398	 39.39	0	420755..421744	+	329	91772480	-	Mbur_0434	-	sulfate adenylyltransferase
399	 40.77	0	421806..422975	+	389	91772481	-	Mbur_0435	-	glycosyl transferase, group 1
400	 39.79	0	423035..424165	+	376	91772482	-	Mbur_0436	-	glycoside hydrolase family protein
401	 43.39	0	424162..425364	+	400	91772483	-	Mbur_0437	-	Alpha-amylase
402	 43.42	0	425387..427330	+	647	91772484	-	Mbur_0438	-	glycoside hydrolase 15-related protein
403	 42.51	0	427375..429357	+	660	91772485	-	Mbur_0439	-	glycogen debranching protein
404	 35.31	-1	430914..431267	+	117	91772486	-	Mbur_0440	-	hypothetical protein
405	 36.61	-1	431543..432091	-	182	91772487	-	Mbur_0441	-	hypothetical protein
406	 33.33	-1	432653..433786	-	377	91772488	-	Mbur_0443	-	hypothetical protein
407	 41.67	0	434075..434602	-	175	91772489	-	Mbur_0444	-	Na-K-Cl cotransporter, putative
408	 41.70	0	435053..435793	+	246	91772490	-	Mbur_0445	-	hypothetical protein
409	 36.54	-1	435655..436434	-	259	91772491	-	Mbur_0446	-	transposase, IS4
410	 44.79	0	436898..438520	-	540	91772492	pheT	Mbur_0447	-	phenylalanyl-tRNA synthetase subunit beta
411	 41.14	0	438741..441134	+	797	91772493	-	Mbur_0448	-	type II secretion system protein E
412	 40.31	0	441152..443302	+	716	91772494	-	Mbur_0449	-	type II secretion system protein
413	 44.08	0	443348..443989	+	213	91772495	rnhB	Mbur_0450	-	ribonuclease HII
414	 44.91	0	445965..446897	+	310	91772496	-	Mbur_0452	-	methylcobalamin:coenzyme M methyltransferase
415	 45.82	0	446953..447777	-	274	91772497	-	Mbur_0453	-	nitroreductase
416	 35.47	-1	448954..449328	+	124	91772498	-	Mbur_0455	-	hypothetical protein
417	 43.93	0	449649..449969	+	106	91772499	-	Mbur_0456	-	translation initiation factor IF-1A
418	 43.53	0	450229..451572	-	447	91772500	-	Mbur_0457	-	L-threonine synthase
419	 33.42	-1	451859..452983	+	374	91772501	-	Mbur_0458	-	hypothetical protein
420	 35.29	-1	453072..454193	-	373	91772502	-	Mbur_0459	-	transposase, IS4
421	 30.63	-2	454549..454770	+	73	91772503	-	Mbur_0460	-	hypothetical protein
422	 44.97	0	454759..455454	-	231	91772504	-	Mbur_0461	-	phosphoribosylformylglycinamidine synthase subunit I
423	 39.76	0	455455..455703	-	82	91772505	-	Mbur_0462	-	phosphoribosylformylglycinamidine synthase subunit PurS
424	 43.17	0	455857..456354	-	165	91772506	-	Mbur_0463	-	CDP-alcohol phosphatidyltransferase
425	 38.83	0	456508..457125	-	205	91772507	-	Mbur_0464	-	TPR repeat-containing protein
426	 42.00	0	457430..458836	+	468	91772508	-	Mbur_0465	-	asparagine synthase
427	 42.96	0	458838..459533	+	231	91772509	-	Mbur_0466	-	hypothetical protein
428	 45.38	0	459620..461014	-	464	91772510	-	Mbur_0467	-	hydroxylamine oxidase
429	 41.09	0	461782..462039	+	85	91772511	-	Mbur_0468	-	hypothetical protein
430	 46.03	0	462129..463562	+	477	91772512	-	Mbur_0469	-	pyruvate kinase
431	 44.38	0	463601..464686	-	361	91772513	-	Mbur_0470	-	hypothetical protein
432	 45.82	0	464735..465991	+	418	91772514	-	Mbur_0471	-	gluconate transporter
433	 42.48	0	466036..466560	+	174	91772515	-	Mbur_0472	-	ADP-ribose binding protein
434	 35.19	-1	466586..466801	-	71	91772516	-	Mbur_0473	-	hypothetical protein
435	 38.53	0	467030..467992	-	320	91772517	-	Mbur_0474	-	MscS mechanosensitive ion channel
436	 37.15	-1	468241..468948	+	235	91772518	-	Mbur_0475	-	hypothetical protein
437	 40.00	0	468945..469784	+	279	91772519	-	Mbur_0476	-	MscS mechanosensitive ion channel
438	 34.02	-1	469862..470296	-	144	91772520	-	Mbur_0477	-	hypothetical protein
439	 36.75	-1	471025..472194	+	389	91772521	-	Mbur_0479	-	hypothetical protein
440	 29.88	-2	473217..473708	-	163	91772522	-	Mbur_0481	-	hypothetical protein
441	 43.35	0	473746..475173	-	475	91772523	-	Mbur_0482	-	divergent AAA ATP
442	 44.05	0	475215..476921	-	568	91772524	-	Mbur_0483	-	N-6 DNA methylase
443	 47.49	+1	477076..479901	-	941	91772525	-	Mbur_0484	-	DEAD/DEAH box helicase-like protein
444	 31.77	-2	480205..480972	+	255	91772526	-	Mbur_0485	-	hypothetical protein
445	 43.95	0	481101..481712	-	203	91772527	-	Mbur_0486	-	ABC proline/glycine betaine transporter, inner membrane subunit
446	 43.55	0	481706..482302	-	198	91772528	-	Mbur_0487	-	ABC proline/glycine betaine transporter, inner membrane subunit
447	 43.68	0	482367..483497	-	376	91772529	-	Mbur_0488	-	glycine betaine/L-proline ABC transporter, ATPase subunit
448	 42.18	0	483579..484505	-	308	91772530	-	Mbur_0489	-	ABC glycine betaine transporter, substrate-binding subunit
449	 44.93	0	484711..485934	-	407	91772531	-	Mbur_0490	-	SufBD
450	 44.00	0	485913..486662	-	249	91772532	-	Mbur_0491	-	ABC transporter, ATPase subunit
451	 33.88	-1	487336..487887	-	183	91772533	-	Mbur_0492	-	hypothetical protein
452	 36.31	-1	488270..488605	-	111	91772534	-	Mbur_0493	-	hypothetical protein
453	 25.93	-2	488844..489113	-	89	91772535	-	Mbur_0494	-	hypothetical protein
454	 37.32	-1	489213..489488	-	91	91772536	-	Mbur_0495	-	hypothetical protein
455	 35.80	-1	489866..490636	-	256	91772537	-	Mbur_0496	-	ABC Fe3+-siderophore transporter, ATPase subunit
456	 38.03	0	490633..491697	-	354	91772538	-	Mbur_0497	-	ABC Fe3+-siderophore transporter, inner membrane subunit
457	 36.20	-1	491735..493477	-	580	91772539	-	Mbur_0498	-	radical SAM family Fe-S protein
458	 36.53	-1	493481..494137	-	218	91772540	-	Mbur_0499	-	UbiE/COQ5 methyltransferase
459	 36.27	-1	494185..495273	-	362	91772541	-	Mbur_0500	-	ABC Fe3+-siderophore transporter, substrate binding subunit
460	 45.55	0	496078..497076	+	332	91772542	-	Mbur_0501	-	ABC glycine betaine/L-proline transporter, ATPase subunit
461	 42.84	0	497080..497910	+	276	91772543	-	Mbur_0502	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
462	 44.56	0	497990..498862	+	290	91772544	-	Mbur_0503	-	ABC glycine betaine/L-proline transporter, substrate-binding subunit
463	 35.93	-1	499489..500334	-	281	91772545	-	Mbur_0504	-	metallophosphoesterase
464	 44.21	0	500775..501896	+	373	91772546	-	Mbur_0505	-	hypothetical protein
465	 42.70	0	503488..504939	-	483	91772547	-	Mbur_0507	-	divergent AAA ATPase
466	 41.86	0	504936..506471	-	511	91772548	-	Mbur_0508	-	restriction modification system DNA specificity subunit
467	 47.26	+1	506614..509370	-	918	91772549	-	Mbur_0509	-	type III restriction enzyme, res subunit
468	 42.59	0	509531..511432	-	633	91772550	-	Mbur_0510	-	Cache sensor signal transduction histidine kinase
469	 37.91	0	511788..511940	+	50	91772551	-	Mbur_0511	-	response regulator
470	 43.19	0	512008..512565	+	185	91772552	-	Mbur_0512	-	XRE family transcriptional regulator
471	 40.66	0	512804..513826	+	340	91772553	-	Mbur_0513	-	hypothetical protein
472	 48.82	+1	514158..515300	+	380	91772554	-	Mbur_0514	-	phosphoserine aminotransferase / L-aspartate aminotransferase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.