IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.63	+1	379..1392	+	337	91772083	rpl3p	Mbur_0001	-	50S ribosomal protein L3P
2	 47.90	+1	1398..2159	+	253	91772084	rpl4lp	Mbur_0002	-	50S ribosomal protein L4P
3	 40.96	0	2156..2404	+	82	91772085	rplW	Mbur_0003	-	50S ribosomal protein L23
4	 47.76	+1	2416..3129	+	237	91772086	rpl2p	Mbur_0004	-	50S ribosomal protein L2P
5	 45.89	0	3146..3559	+	137	91772087	rps19p	Mbur_0005	-	30S ribosomal protein S19P
6	 45.83	0	3570..4025	+	151	91772088	rpl22p	Mbur_0006	-	50S ribosomal protein L22P
7	 47.54	+1	4025..4939	+	304	91772089	rps3p	Mbur_0007	-	30S ribosomal protein S3P
8	 48.04	+1	4942..5145	+	67	91772090	-	Mbur_0008	-	50S ribosomal protein L29
9	 41.18	0	5147..5452	+	101	91772091	-	Mbur_0009	-	ribonuclease P protein component 1
10	 44.85	0	5458..5787	+	109	91772092	rps17p	Mbur_0010	-	30S ribosomal protein S17P
11	 45.36	0	5784..6182	+	132	91772093	rpl14p	Mbur_0011	-	50S ribosomal protein L14P
12	 44.63	0	6193..6546	+	117	91772094	rpl24p	Mbur_0012	-	50S ribosomal protein L24P
13	 43.46	0	6551..7261	+	236	91772095	-	Mbur_0013	-	30S ribosomal protein S4e
14	 42.94	0	7254..7763	+	169	91772096	rpl5p	Mbur_0014	-	50S ribosomal protein L5P
15	 43.79	0	7763..7915	+	50	91772097	rps14P	Mbur_0015	-	30S ribosomal protein S14P
16	 41.98	0	7927..8319	+	130	91772098	rps8p	Mbur_0016	-	30S ribosomal protein S8P
17	 43.07	0	8338..8871	+	177	91772099	rpl6p	Mbur_0017	-	50S ribosomal protein L6P
18	 44.07	0	8896..9342	+	148	91772100	rpl32e	Mbur_0018	-	50S ribosomal protein L32e
19	 46.76	+1	9344..9790	+	148	91772101	rpl19e	Mbur_0019	-	50S ribosomal protein L19e
20	 48.47	+1	9850..10371	+	173	91772102	rpl18p	Mbur_0020	-	50S ribosomal protein L18P
21	 46.86	+1	10384..11019	+	211	91772103	rps5p	Mbur_0021	-	30S ribosomal protein S5P
22	 47.40	+1	11022..11483	+	153	91772104	rpl30p	Mbur_0022	-	50S ribosomal protein L30P
23	 46.17	0	11488..11931	+	147	91772105	rpl15p	Mbur_0023	-	50S ribosomal protein L15P
24	 45.10	0	12037..13515	+	492	91772106	-	Mbur_0024	-	preprotein translocase subunit SecY
25	 44.14	0	13537..14184	+	215	91772107	adk	Mbur_0025	-	adenylate kinase
26	 43.64	0	14204..14824	+	206	91772108	-	Mbur_0026	-	hypothetical protein
27	 42.61	0	14827..15354	+	175	91772109	-	Mbur_0027	-	cytidylate kinase
28	 46.18	0	15375..16370	+	331	91772110	-	Mbur_0028	-	H/ACA RNA-protein complex component Cbf5p
29	 32.56	-2	16763..17281	+	172	91772111	-	Mbur_0029	-	death-on-curing protein
30	 45.48	0	17872..19089	+	405	91772112	-	Mbur_0030	-	hypothetical protein
31	 42.86	0	19141..19665	-	174	91772113	-	Mbur_0031	-	ThiJ/PfpI
32	 43.71	0	19828..22650	+	940	91772114	-	Mbur_0032	-	peptidase M1, membrane alanine aminopeptidase
33	 40.24	0	22656..23321	-	221	91772115	-	Mbur_0033	-	HAD family hydrolase
34	 40.07	0	23343..23609	-	88	91772116	-	Mbur_0034	-	hypothetical protein
35	 39.76	0	23792..24694	+	300	91772117	-	Mbur_0035	-	hypothetical protein
36	 44.07	0	25003..25449	+	148	91772118	rps13p	Mbur_0036	-	30S ribosomal protein S13P
37	 47.93	+1	25462..26016	+	184	91772119	rps4p	Mbur_0037	-	30S ribosomal protein S4
38	 51.44	+2	26030..26410	+	126	91772120	rps11p	Mbur_0038	-	30S ribosomal protein S11P
39	 43.78	0	26434..27237	+	267	91772121	-	Mbur_0039	-	DNA-directed RNA polymerase subunit D
40	 42.25	0	28589..29440	-	283	91772122	-	Mbur_0041	-	undecaprenyl pyrophosphate synthetase
41	 42.95	0	29584..29895	-	103	91772123	-	Mbur_0042	-	hypothetical protein
42	 43.17	0	30002..31048	-	348	91772124	-	Mbur_0043	-	radical SAM family Fe-S protein
43	 39.58	0	31124..31315	+	63	91772125	-	Mbur_0044	-	4Fe-4S ferredoxin, iron-sulfur binding
44	 40.77	0	32951..33286	-	111	91772126	-	Mbur_0046	-	hypothetical protein
45	 43.88	0	33307..34851	-	514	91772127	-	Mbur_0047	-	type II secretion system protein E
46	 34.97	-1	35190..35618	-	142	91772128	-	Mbur_0048	-	hypothetical protein
47	 43.61	0	35836..37266	-	476	91772129	-	Mbur_0049	-	UDP-glucose/GDP-mannose dehydrogenase
48	 37.86	0	37648..37890	-	80	91772130	-	Mbur_0050	-	hypothetical protein
49	 41.50	0	38209..38661	+	150	91772131	-	Mbur_0051	-	N-acetylglutamate synthase
50	 43.23	0	38736..39665	+	309	91772132	-	Mbur_0052	-	hypothetical protein
51	 44.55	0	39784..40095	-	103	91772133	-	Mbur_0053	-	hypothetical protein
52	 43.29	0	40108..41061	-	317	91772134	-	Mbur_0054	-	GTP cyclohydrolase
53	 44.78	0	41365..41661	+	98	91772135	-	Mbur_0055	-	nucleoid protein MC1
54	 42.73	0	41796..42710	+	304	91772136	-	Mbur_0056	-	acetylglutamate kinase
55	 44.35	0	42736..43779	-	347	91772137	-	Mbur_0057	-	hypothetical protein
56	 46.56	+1	43780..44694	-	304	91772138	-	Mbur_0058	-	GMP synthase subunit B
57	 43.97	0	45035..46369	+	444	91772139	-	Mbur_0059	-	hypothetical protein
58	 42.22	0	46778..48184	+	468	91772140	-	Mbur_0060	-	hypothetical protein
59	 44.50	0	48323..50266	+	647	91772141	-	Mbur_0061	-	ATP-dependent DNA helicase RecQ
60	 42.42	0	50274..51032	-	252	91772142	-	Mbur_0062	-	peptidase A24B, FlaK-like
61	 41.82	0	52556..52885	+	109	91772143	-	Mbur_0064	-	hypothetical protein
62	 44.98	0	52974..53900	+	308	91772144	pyrB	Mbur_0065	-	aspartate carbamoyltransferase catalytic subunit
63	 41.88	0	53897..54376	+	159	91772145	-	Mbur_0066	-	aspartate carbamoyltransferase regulatory subunit
64	 33.44	-1	54490..55398	-	302	91772146	-	Mbur_0067	-	cell surface protein
65	 42.48	0	55818..58265	-	815	91772147	-	Mbur_0068	-	plasma-membrane proton-efflux P-type ATPase
66	 38.10	0	58499..59800	-	433	91772148	-	Mbur_0069	-	amino acid transporter
67	 38.69	0	59813..60652	-	279	91772149	-	Mbur_0070	-	amino acid transporter
68	 32.77	-2	61225..61581	+	118	91772150	-	Mbur_0071	-	hypothetical protein
69	 29.59	-2	61749..62522	-	257	91772151	-	Mbur_0072	-	alpha/beta hydrolase
70	 37.27	-1	62500..63768	-	422	91772152	-	Mbur_0073	-	radical SAM family Fe-S protein
71	 35.51	-1	63798..64532	-	244	91772153	-	Mbur_0074	-	hypothetical protein
72	 41.86	0	65008..66039	+	343	91772154	-	Mbur_0075	-	major facilitator transporter
73	 42.92	0	66015..66233	+	72	91772155	-	Mbur_0076	-	class H tetracycline resistance efflux protein
74	 41.61	0	66303..66785	-	160	91772156	-	Mbur_0077	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
75	 42.06	0	66871..68085	-	404	91772157	-	Mbur_0078	-	hypothetical protein
76	 43.87	0	68101..69315	-	404	91772158	-	Mbur_0079	-	cell division protein FtsX
77	 42.47	0	69320..70567	-	415	91772159	-	Mbur_0080	-	hypothetical protein
78	 43.57	0	70587..71309	-	240	91772160	-	Mbur_0081	-	ABC transporter, ATPase subunit
79	 38.09	0	73103..75394	+	763	91772161	-	Mbur_0083	-	PAS/PAC sensor signal transduction histidine kinase
80	 43.70	0	75833..76459	-	208	91772162	-	Mbur_0084	-	methyltransferase type 11
81	 41.13	0	76519..77262	-	247	91772163	-	Mbur_0085	-	sugar fermentation stimulation protein
82	 38.99	0	77293..77628	-	111	91772164	-	Mbur_0086	-	hypothetical protein
83	 42.72	0	78966..79487	+	173	91772165	-	Mbur_0088	-	hypothetical protein
84	 43.69	0	79634..79855	+	73	91772166	-	Mbur_0089	-	SirA-like protein
85	 43.83	0	79908..80288	+	126	91772167	-	Mbur_0090	-	hypothetical protein
86	 42.59	0	80314..80475	+	53	91772168	-	Mbur_0091	-	rubredoxin-type Fe(Cys)4 protein
87	 45.07	0	80511..82001	+	496	91772169	-	Mbur_0092	-	glutamate synthase (NADPH) GltB2 subunit
88	 44.09	0	82022..82300	+	92	91772170	-	Mbur_0093	-	fumarate hydratase class II
89	 42.17	0	82356..82898	+	180	91772171	-	Mbur_0094	-	succinate dehydrogenase subunit B
90	 44.67	0	83208..85439	+	743	91772172	-	Mbur_0095	-	DNA topoisomerase I
91	 45.79	0	85463..86698	+	411	91772173	-	Mbur_0096	-	beta-lactamase-like
92	 44.14	0	87817..88362	+	181	91772174	-	Mbur_0098	-	hypothetical protein
93	 43.69	0	88414..89301	-	295	91772175	-	Mbur_0099	-	serine/threonine protein kinase
94	 43.00	0	89360..89752	-	130	91772176	-	Mbur_0100	-	hypothetical protein
95	 44.52	0	89814..90734	-	306	91772177	-	Mbur_0101	-	thioredoxin reductase
96	 39.92	0	90747..90989	-	80	91772178	-	Mbur_0102	-	hypothetical protein
97	 40.48	0	91097..92047	-	316	91772179	-	Mbur_0103	-	hypothetical protein
98	 43.21	0	92159..92938	-	259	91772180	-	Mbur_0104	-	flagellin
99	 37.64	0	93332..94120	+	262	91772181	-	Mbur_0105	-	hypothetical protein
100	 38.29	0	94113..94475	+	120	91772182	-	Mbur_0106	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.