IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
271	 36.46	-1	267847..268038	-	63	91772353	-	Mbur_0292	-	XRE family transcriptional regulator
272	 36.64	-1	268056..268448	-	130	91772354	-	Mbur_0293	-	hypothetical protein
273	 38.59	0	269259..270038	-	259	91772355	-	Mbur_0295	-	protein of unknown function DUF306, Meta and HslJ
274	 32.88	-1	270409..270846	-	145	91772356	-	Mbur_0296	-	hypothetical protein
275	 29.98	-2	270923..271489	+	188	91772357	-	Mbur_0297	-	hypothetical protein
276	 40.34	0	271941..273566	+	541	91772358	-	Mbur_0298	-	hypothetical protein
277	 38.92	0	273578..274831	+	417	91772359	-	Mbur_0299	-	hypothetical protein
278	 40.22	0	274896..275519	+	207	91772360	-	Mbur_0300	-	GTP-binding protein
279	 40.10	0	275534..276154	-	206	91772361	-	Mbur_0301	-	radical SAM family Fe-S protein
280	 39.84	0	276151..276519	-	122	91772362	-	Mbur_0302	-	hypothetical protein
281	 47.10	+1	276516..277706	-	396	91772363	-	Mbur_0303	-	geranylgeranyl reductase
282	 44.44	0	277908..278114	-	68	91772364	-	Mbur_0304	-	hypothetical protein
283	 38.13	0	278307..278765	-	152	91772365	-	Mbur_0305	-	hypothetical protein
284	 44.69	0	278781..280250	-	489	91772366	-	Mbur_0306	-	dihydropteroate synthase
285	 47.76	+1	280356..281540	-	394	91772367	-	Mbur_0307	-	cell division protein FtsZ
286	 42.53	0	282080..282775	+	231	91772368	-	Mbur_0308	-	hypothetical protein
287	 46.36	0	282843..283556	-	237	91772369	-	Mbur_0309	-	hypothetical protein
288	 47.55	+1	283566..283952	-	128	91772370	-	Mbur_0310	-	4Fe-4S ferredoxin, iron-sulfur binding
289	 44.71	0	283955..285457	-	500	91772371	-	Mbur_0311	-	hypothetical protein
290	 40.34	0	285696..287366	-	556	91772372	-	Mbur_0312	-	GAF sensor signal transduction histidine kinase
291	 44.95	0	287755..288486	+	243	91772373	-	Mbur_0313	-	peptidylprolyl isomerase, FKBP-type
292	 40.28	0	289064..292129	-	1021	91772374	-	Mbur_0314	-	cadherin
293	 36.98	-1	292509..293987	-	492	91772375	-	Mbur_0315	-	transposase
294	 50.51	+1	294326..296857	-	843	91772376	-	Mbur_0316	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
295	 40.24	0	298099..298431	+	110	91772377	-	Mbur_0318	-	hypothetical protein
296	 34.89	-1	299711..300418	+	235	91772378	-	Mbur_0320	-	hypothetical protein
297	 40.31	0	300430..301647	-	405	91772379	-	Mbur_0321	-	nicotinate phosphoribosyltransferase
298	 35.82	-1	302373..303497	+	374	91772380	-	Mbur_0323	-	transposase, mutator type
299	 43.09	0	308487..309050	+	187	91772381	-	Mbur_0327	-	hypothetical protein
300	 43.32	0	309172..309852	-	226	91772382	-	Mbur_0328	-	hypothetical protein
301	 33.93	-1	310072..310404	-	110	91772383	-	Mbur_0329	-	hypothetical protein
302	 31.82	-2	310683..310946	+	87	91772384	-	Mbur_0330	-	hypothetical protein
303	 42.20	0	311247..312227	+	326	91772385	-	Mbur_0331	-	hypothetical protein
304	 39.24	0	312336..313487	+	383	91772386	-	Mbur_0332	-	hypothetical protein
305	 35.17	-1	313510..314436	+	308	91772387	-	Mbur_0333	-	cell surface glycoprotein (s-layer protein)
306	 39.39	0	314864..315589	+	241	91772388	-	Mbur_0334	-	thioredoxin-related protein
307	 43.79	0	315644..316102	+	152	91772389	-	Mbur_0335	-	formylmethanofuran dehydrogenase, subunit G
308	 44.26	0	316119..317363	+	414	91772390	-	Mbur_0336	-	formylmethanofuran dehydrogenase, subunit B
309	 43.36	0	317364..317762	+	132	91772391	-	Mbur_0337	-	formylmethanofuran dehydrogenase, subunit D
310	 44.41	0	317839..318687	-	282	91772392	-	Mbur_0338	-	hypothetical protein
311	 42.78	0	318762..320063	-	433	91772393	-	Mbur_0339	-	phenylacetate-CoA ligase
312	 35.57	-1	320326..321264	+	312	91772394	ubiA	Mbur_0340	-	prenyltransferase
313	 38.45	0	322209..323498	+	429	91772395	-	Mbur_0342	-	hypothetical protein
314	 42.39	0	323644..324648	+	334	91772396	-	Mbur_0343	-	hypothetical protein
315	 36.93	-1	324717..325022	-	101	91772397	-	Mbur_0344	-	hypothetical protein
316	 49.21	+1	325764..325952	-	62	91772398	-	Mbur_0345	-	hypothetical protein
317	 42.76	0	326834..327406	+	190	91772399	-	Mbur_0346	-	flagellin
318	 42.25	0	327421..327981	+	186	91772400	-	Mbur_0347	-	flagellin
319	 39.48	0	328099..328863	+	254	91772401	-	Mbur_0348	-	hypothetical protein
320	 37.34	-1	328845..329318	+	157	91772402	-	Mbur_0349	-	hypothetical protein
321	 36.71	-1	329323..329796	+	157	91772403	-	Mbur_0350	-	putative flagellar protein FlaF
322	 37.66	0	329798..330514	+	238	91772404	-	Mbur_0351	-	flagellar accessory protein FlaH
323	 36.39	-1	330546..332378	+	610	91772405	-	Mbur_0352	-	type II secretion system protein E
324	 37.72	0	332393..334012	+	539	91772406	-	Mbur_0353	-	flagellar assembly protein J
325	 37.14	-1	334014..334958	+	314	91772407	-	Mbur_0354	-	hypothetical protein
326	 29.01	-2	335200..335361	+	53	91772408	-	Mbur_0355	-	hypothetical protein
327	 40.58	0	335909..337867	+	652	91772409	-	Mbur_0356	-	chemotaxis sensory transducer
328	 37.29	-1	337909..338388	+	159	91772410	-	Mbur_0357	-	CheW-like protein
329	 40.20	0	338385..339185	+	266	91772411	-	Mbur_0358	-	hypothetical protein
330	 37.19	-1	339203..339565	+	120	91772412	-	Mbur_0359	-	CheY like protein
331	 37.78	0	339580..340635	+	351	91772413	-	Mbur_0360	-	chemotaxis-specific methylesterase
332	 36.38	-1	340625..343318	+	897	91772414	-	Mbur_0361	-	CheW-like protein
333	 37.15	-1	343311..343913	+	200	91772415	-	Mbur_0362	-	CheC-like protein
334	 41.30	0	344096..344572	+	158	91772416	-	Mbur_0363	-	chemoreceptor glutamine deamidase CheD
335	 34.44	-1	344563..345375	+	270	91772417	-	Mbur_0364	-	protein-glutamate O-methyltransferase
336	 35.99	-1	345498..346664	+	388	91772418	-	Mbur_0365	-	putative transposase
337	 30.57	-2	346624..347202	-	192	91772419	-	Mbur_0366	-	hypothetical protein
338	 43.69	0	347296..347778	-	160	91772420	-	Mbur_0367	-	formaldehyde-activating enzyme
339	 32.01	-2	347987..348364	+	125	91772421	-	Mbur_0368	-	HxlR family transcriptional regulator
340	 46.13	0	349199..350425	+	408	91772422	-	Mbur_0369	-	geranylgeranyl reductase
341	 44.63	0	350552..351613	+	353	91772423	-	Mbur_0370	-	hypothetical protein
342	 42.73	0	351910..352782	+	290	91772424	-	Mbur_0371	-	hypothetical protein
343	 44.78	0	353003..353500	+	165	91772425	-	Mbur_0372	-	transcription factor IIE (TFIIE), alpha subunit
344	 43.79	0	353503..354009	+	168	91772426	-	Mbur_0373	-	hypothetical protein
345	 43.44	0	354138..354770	+	210	91772427	-	Mbur_0374	-	proteasome endopeptidase complex
346	 43.54	0	354873..356783	+	636	91772428	-	Mbur_0375	-	beta-lactamase-like protein
347	 40.50	0	356787..357428	-	213	91772429	-	Mbur_0376	-	HAD family hydrolase
348	 39.91	0	357690..357902	+	70	91772430	-	Mbur_0377	-	hypothetical protein
349	 37.60	0	357982..358356	-	124	91772431	-	Mbur_0378	-	hypothetical protein
350	 41.49	0	358667..359659	-	330	91772432	-	Mbur_0379	-	aspartate semialdehyde dehydrogenase
351	 35.88	-1	360103..360810	+	235	91772433	-	Mbur_0380	-	histidine kinase
352	 43.56	0	360895..361725	-	276	91772434	-	Mbur_0381	-	molybdopterin-guanine dinucleotide biosynthesis protein B
353	 46.52	+1	361851..362540	+	229	91772435	radC	Mbur_0382	-	DNA repair protein RadC
354	 43.08	0	362573..362962	-	129	91772436	-	Mbur_0383	-	hypothetical protein
355	 47.23	+1	362987..364267	+	426	91772437	-	Mbur_0384	-	hypothetical protein
356	 37.68	0	364335..364748	-	137	91772438	-	Mbur_0385	-	hypothetical protein
357	 36.21	-1	366051..366398	-	115	91772439	-	Mbur_0387	-	transcriptional regulator
358	 41.20	0	366558..367307	-	249	91772440	-	Mbur_0388	-	ABC efflux pump, inner membrane subunit
359	 40.85	0	367312..368295	-	327	91772441	-	Mbur_0389	-	daunorubicin resistance ABC transporter, ATPase subunit
360	 46.21	0	369355..371256	+	633	91772442	-	Mbur_0391	-	glutamyl-tRNA(Gln) amidotransferase subunit E
361	 38.78	0	371265..372329	+	354	91772443	-	Mbur_0392	-	WD40-like beta propeller protein
362	 43.01	0	373057..374595	+	512	91772444	-	Mbur_0394	-	sulphate transporter
363	 39.90	0	374819..375016	+	65	91772445	-	Mbur_0395	-	hypothetical protein
364	 43.40	0	375063..375827	-	254	91772446	-	Mbur_0396	-	GTP-binding protein YlqF
365	 46.23	0	376112..377173	-	353	91772447	-	Mbur_0397	-	hypothetical protein
366	 37.58	0	377626..378567	+	313	91772448	-	Mbur_0398	-	transposase, IS4
367	 33.17	-1	378853..381315	+	820	91772449	-	Mbur_0399	-	MCP methyltransferase, CheR-type
368	 30.74	-2	381331..382641	+	436	91772450	-	Mbur_0400	-	PAS sensor signal transduction histidine kinase
369	 36.50	-1	382938..384107	-	389	91772451	-	Mbur_0401	-	transposase
370	 42.18	0	385443..385736	-	97	91772452	-	Mbur_0402	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.