IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
241	 43.86	0	234341..235081	-	246	91772323	-	Mbur_0258	-	hypothetical protein
242	 43.43	0	235446..236237	+	263	91772324	-	Mbur_0259	-	nicotinate-nucleotide diphosphorylase (carboxylating)
243	 41.49	0	236547..237098	-	183	91772325	-	Mbur_0260	-	hemerythrin HHE cation binding protein
244	 43.25	0	237318..237680	+	120	91772326	-	Mbur_0261	-	alkylhydroperoxidase family protein
245	 43.64	0	237923..239494	+	523	91772327	-	Mbur_0262	-	PAS/PAC sensor signal transduction histidine kinase
246	 43.14	0	239590..239793	-	67	91772328	-	Mbur_0263	-	hypothetical protein
247	 44.59	0	240041..240262	-	73	91772329	-	Mbur_0264	-	redox-active disulfide protein 2
248	 39.59	0	240793..242406	-	537	91772330	-	Mbur_0266	-	glycosyl transferase, group 1
249	 42.05	0	243533..246136	+	867	91772331	-	Mbur_0268	-	S-layer-related protein
250	 40.50	0	246344..247264	+	306	91772332	-	Mbur_0269	-	TM helix protein
251	 37.93	0	247461..248243	-	260	91772333	-	Mbur_0270	-	hypothetical protein
252	 33.78	-1	248623..249294	+	223	91772334	-	Mbur_0271	-	transposase, IS4
253	 37.52	0	249354..249998	-	214	91772335	-	Mbur_0272	-	multiple antibiotic resistance (MarC)-related proteins
254	 35.48	-1	250683..251522	-	279	91772336	-	Mbur_0273	-	GCN5-related N-acetyltransferase
255	 39.22	0	251519..252826	-	435	91772337	-	Mbur_0274	-	L-lysine 2,3-aminomutase
256	 35.58	-1	252981..253292	-	103	91772338	-	Mbur_0275	-	hypothetical protein
257	 37.87	0	253870..254244	-	124	91772339	-	Mbur_0277	-	hypothetical protein
258	 39.54	0	254241..254933	-	230	91772340	-	Mbur_0278	-	hypothetical protein
259	 34.28	-1	254975..256351	-	458	91772341	-	Mbur_0279	-	parallel beta-helix repeat-containing protein
260	 46.05	0	256573..257421	-	282	91772342	-	Mbur_0280	-	formate dehydrogenase family accessory protein FdhD
261	 47.25	+1	257424..258731	-	435	91772343	-	Mbur_0281	-	formylmethanofuran dehydrogenase, subunit B
262	 41.79	0	258733..259122	-	129	91772344	-	Mbur_0282	-	formylmethanofuran dehydrogenase, subunit D
263	 46.91	+1	259132..259941	-	269	91772345	-	Mbur_0283	-	formylmethanofuran dehydrogenase, subunit C
264	 46.61	+1	259946..261700	-	584	91772346	-	Mbur_0284	-	formylmethanofuran dehydrogenase, subunit A
265	 47.12	+1	261700..262722	-	340	91772347	-	Mbur_0285	-	formylmethanofuran dehydrogenase, subunit F
266	 43.99	0	262739..263329	-	196	91772348	-	Mbur_0286	-	formylmethanofuran dehydrogenase, subunit E
267	 45.49	0	263588..263875	-	95	91772349	-	Mbur_0287	-	hypothetical protein
268	 46.70	+1	263926..264561	-	211	91772350	-	Mbur_0288	-	nitrogen-fixing NifU-like protein
269	 44.79	0	264595..265764	-	389	91772351	-	Mbur_0289	-	aminotransferase, class V
270	 45.99	0	266191..266514	-	107	91772352	-	Mbur_0290	-	hypothetical protein
271	 36.46	-1	267847..268038	-	63	91772353	-	Mbur_0292	-	XRE family transcriptional regulator
272	 36.64	-1	268056..268448	-	130	91772354	-	Mbur_0293	-	hypothetical protein
273	 38.59	0	269259..270038	-	259	91772355	-	Mbur_0295	-	protein of unknown function DUF306, Meta and HslJ
274	 32.88	-1	270409..270846	-	145	91772356	-	Mbur_0296	-	hypothetical protein
275	 29.98	-2	270923..271489	+	188	91772357	-	Mbur_0297	-	hypothetical protein
276	 40.34	0	271941..273566	+	541	91772358	-	Mbur_0298	-	hypothetical protein
277	 38.92	0	273578..274831	+	417	91772359	-	Mbur_0299	-	hypothetical protein
278	 40.22	0	274896..275519	+	207	91772360	-	Mbur_0300	-	GTP-binding protein
279	 40.10	0	275534..276154	-	206	91772361	-	Mbur_0301	-	radical SAM family Fe-S protein
280	 39.84	0	276151..276519	-	122	91772362	-	Mbur_0302	-	hypothetical protein
281	 47.10	+1	276516..277706	-	396	91772363	-	Mbur_0303	-	geranylgeranyl reductase
282	 44.44	0	277908..278114	-	68	91772364	-	Mbur_0304	-	hypothetical protein
283	 38.13	0	278307..278765	-	152	91772365	-	Mbur_0305	-	hypothetical protein
284	 44.69	0	278781..280250	-	489	91772366	-	Mbur_0306	-	dihydropteroate synthase
285	 47.76	+1	280356..281540	-	394	91772367	-	Mbur_0307	-	cell division protein FtsZ
286	 42.53	0	282080..282775	+	231	91772368	-	Mbur_0308	-	hypothetical protein
287	 46.36	0	282843..283556	-	237	91772369	-	Mbur_0309	-	hypothetical protein
288	 47.55	+1	283566..283952	-	128	91772370	-	Mbur_0310	-	4Fe-4S ferredoxin, iron-sulfur binding
289	 44.71	0	283955..285457	-	500	91772371	-	Mbur_0311	-	hypothetical protein
290	 40.34	0	285696..287366	-	556	91772372	-	Mbur_0312	-	GAF sensor signal transduction histidine kinase
291	 44.95	0	287755..288486	+	243	91772373	-	Mbur_0313	-	peptidylprolyl isomerase, FKBP-type
292	 40.28	0	289064..292129	-	1021	91772374	-	Mbur_0314	-	cadherin
293	 36.98	-1	292509..293987	-	492	91772375	-	Mbur_0315	-	transposase
294	 50.51	+1	294326..296857	-	843	91772376	-	Mbur_0316	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
295	 40.24	0	298099..298431	+	110	91772377	-	Mbur_0318	-	hypothetical protein
296	 34.89	-1	299711..300418	+	235	91772378	-	Mbur_0320	-	hypothetical protein
297	 40.31	0	300430..301647	-	405	91772379	-	Mbur_0321	-	nicotinate phosphoribosyltransferase
298	 35.82	-1	302373..303497	+	374	91772380	-	Mbur_0323	-	transposase, mutator type
299	 43.09	0	308487..309050	+	187	91772381	-	Mbur_0327	-	hypothetical protein
300	 43.32	0	309172..309852	-	226	91772382	-	Mbur_0328	-	hypothetical protein
301	 33.93	-1	310072..310404	-	110	91772383	-	Mbur_0329	-	hypothetical protein
302	 31.82	-2	310683..310946	+	87	91772384	-	Mbur_0330	-	hypothetical protein
303	 42.20	0	311247..312227	+	326	91772385	-	Mbur_0331	-	hypothetical protein
304	 39.24	0	312336..313487	+	383	91772386	-	Mbur_0332	-	hypothetical protein
305	 35.17	-1	313510..314436	+	308	91772387	-	Mbur_0333	-	cell surface glycoprotein (s-layer protein)
306	 39.39	0	314864..315589	+	241	91772388	-	Mbur_0334	-	thioredoxin-related protein
307	 43.79	0	315644..316102	+	152	91772389	-	Mbur_0335	-	formylmethanofuran dehydrogenase, subunit G
308	 44.26	0	316119..317363	+	414	91772390	-	Mbur_0336	-	formylmethanofuran dehydrogenase, subunit B
309	 43.36	0	317364..317762	+	132	91772391	-	Mbur_0337	-	formylmethanofuran dehydrogenase, subunit D
310	 44.41	0	317839..318687	-	282	91772392	-	Mbur_0338	-	hypothetical protein
311	 42.78	0	318762..320063	-	433	91772393	-	Mbur_0339	-	phenylacetate-CoA ligase
312	 35.57	-1	320326..321264	+	312	91772394	ubiA	Mbur_0340	-	prenyltransferase
313	 38.45	0	322209..323498	+	429	91772395	-	Mbur_0342	-	hypothetical protein
314	 42.39	0	323644..324648	+	334	91772396	-	Mbur_0343	-	hypothetical protein
315	 36.93	-1	324717..325022	-	101	91772397	-	Mbur_0344	-	hypothetical protein
316	 49.21	+1	325764..325952	-	62	91772398	-	Mbur_0345	-	hypothetical protein
317	 42.76	0	326834..327406	+	190	91772399	-	Mbur_0346	-	flagellin
318	 42.25	0	327421..327981	+	186	91772400	-	Mbur_0347	-	flagellin
319	 39.48	0	328099..328863	+	254	91772401	-	Mbur_0348	-	hypothetical protein
320	 37.34	-1	328845..329318	+	157	91772402	-	Mbur_0349	-	hypothetical protein
321	 36.71	-1	329323..329796	+	157	91772403	-	Mbur_0350	-	putative flagellar protein FlaF
322	 37.66	0	329798..330514	+	238	91772404	-	Mbur_0351	-	flagellar accessory protein FlaH
323	 36.39	-1	330546..332378	+	610	91772405	-	Mbur_0352	-	type II secretion system protein E
324	 37.72	0	332393..334012	+	539	91772406	-	Mbur_0353	-	flagellar assembly protein J
325	 37.14	-1	334014..334958	+	314	91772407	-	Mbur_0354	-	hypothetical protein
326	 29.01	-2	335200..335361	+	53	91772408	-	Mbur_0355	-	hypothetical protein
327	 40.58	0	335909..337867	+	652	91772409	-	Mbur_0356	-	chemotaxis sensory transducer
328	 37.29	-1	337909..338388	+	159	91772410	-	Mbur_0357	-	CheW-like protein
329	 40.20	0	338385..339185	+	266	91772411	-	Mbur_0358	-	hypothetical protein
330	 37.19	-1	339203..339565	+	120	91772412	-	Mbur_0359	-	CheY like protein
331	 37.78	0	339580..340635	+	351	91772413	-	Mbur_0360	-	chemotaxis-specific methylesterase
332	 36.38	-1	340625..343318	+	897	91772414	-	Mbur_0361	-	CheW-like protein
333	 37.15	-1	343311..343913	+	200	91772415	-	Mbur_0362	-	CheC-like protein
334	 41.30	0	344096..344572	+	158	91772416	-	Mbur_0363	-	chemoreceptor glutamine deamidase CheD
335	 34.44	-1	344563..345375	+	270	91772417	-	Mbur_0364	-	protein-glutamate O-methyltransferase
336	 35.99	-1	345498..346664	+	388	91772418	-	Mbur_0365	-	putative transposase
337	 30.57	-2	346624..347202	-	192	91772419	-	Mbur_0366	-	hypothetical protein
338	 43.69	0	347296..347778	-	160	91772420	-	Mbur_0367	-	formaldehyde-activating enzyme
339	 32.01	-2	347987..348364	+	125	91772421	-	Mbur_0368	-	HxlR family transcriptional regulator
340	 46.13	0	349199..350425	+	408	91772422	-	Mbur_0369	-	geranylgeranyl reductase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.