IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
182	 46.72	+1	178818..179609	+	263	91772264	-	Mbur_0196	-	proteasome subunit alpha
183	 44.30	0	179653..180345	+	230	91772265	-	Mbur_0197	-	putative RNA-associated protein
184	 42.17	0	180357..181148	+	263	91772266	-	Mbur_0198	-	exosome complex RNA-binding protein Rrp4
185	 46.51	+1	181199..182230	+	343	91772267	-	Mbur_0199	-	exosome complex exonuclease Rrp41
186	 45.38	0	182223..183002	+	259	91772268	-	Mbur_0200	-	exosome complex RNA-binding protein Rrp42
187	 43.40	0	183096..183383	+	95	91772269	rpl37ae	Mbur_0201	-	50S ribosomal protein L37Ae
188	 47.52	+1	183389..183529	+	46	91772270	-	Mbur_0202	-	DNA-directed RNA polymerase subunit P
189	 39.53	0	183536..184003	+	155	91772271	-	Mbur_0203	-	Imp4 family protein
190	 43.14	0	184000..184254	+	84	91772272	-	Mbur_0204	-	hypothetical protein
191	 47.18	+1	184339..184692	+	117	91772273	-	Mbur_0205	-	prefoldin, beta subunit
192	 44.51	0	184754..185719	+	321	91772274	-	Mbur_0206	-	phosphoesterase, RecJ-like protein
193	 44.60	0	185770..187074	+	434	91772275	-	Mbur_0207	-	phenylacetate-CoA ligase
194	 43.84	0	187118..187555	+	145	91772276	-	Mbur_0208	-	amino acid-binding (ACT) protein
195	 46.15	0	187655..188005	+	116	91772277	-	Mbur_0209	-	hypothetical protein
196	 44.07	0	188022..188999	+	325	91772278	-	Mbur_0210	-	hypothetical protein
197	 39.36	0	189047..189859	-	270	91772279	-	Mbur_0211	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
198	 42.17	0	189863..191152	+	429	91772280	-	Mbur_0212	-	hypothetical protein
199	 43.78	0	191160..192107	+	315	91772281	-	Mbur_0213	-	triphosphoribosyl-dephospho-CoA protein
200	 41.21	0	192107..192703	+	198	91772282	-	Mbur_0214	-	hypothetical protein
201	 42.92	0	192707..193186	+	159	91772283	-	Mbur_0215	-	CMP/dCMP deaminase, zinc-binding
202	 40.29	0	193202..194092	-	296	91772284	-	Mbur_0216	-	TPR repeat-containing protein
203	 42.16	0	194363..196921	+	852	91772285	-	Mbur_0217	-	multi-sensor protein
204	 43.50	0	197068..197913	+	281	91772286	-	Mbur_0218	-	hypothetical protein
205	 43.79	0	198129..198482	+	117	91772287	rpl7ae	Mbur_0219	-	50S ribosomal protein L7Ae
206	 46.76	+1	198505..198720	+	71	91772288	rps28e	Mbur_0220	-	30S ribosomal protein S28e
207	 43.39	0	198726..198914	+	62	91772289	-	Mbur_0221	-	50S ribosomal protein L24e
208	 47.78	+1	198929..199378	+	149	91772290	-	Mbur_0222	-	nucleoside diphosphate kinase
209	 44.37	0	199534..201309	+	591	91772291	-	Mbur_0223	-	translation initiation factor IF-2
210	 45.83	0	201400..201807	+	135	91772292	-	Mbur_0224	-	30S ribosomal protein S6e
211	 41.77	0	202102..203346	+	414	91772293	-	Mbur_0225	-	TPR repeat-containing protein
212	 31.37	-2	203379..203735	+	118	91772294	-	Mbur_0226	-	hypothetical protein
213	 39.95	0	203797..204189	+	130	91772295	-	Mbur_0227	-	thioredoxin-related
214	 34.33	-1	204212..205420	-	402	91772296	-	Mbur_0228	-	transposase, IS204/IS1001/IS1096/IS1165
215	 40.89	0	205728..206336	-	202	91772297	-	Mbur_0229	-	hypothetical protein
216	 47.86	+1	206429..206779	-	116	91772298	-	Mbur_0230	-	hypothetical protein
217	 41.73	0	206805..207638	-	277	91772299	-	Mbur_0231	-	ArsR family transcriptional regulator
218	 35.95	-1	207722..207874	-	50	91772300	-	Mbur_0232	-	hypothetical protein
219	 37.33	-1	208509..208808	-	99	91772301	-	Mbur_0233	-	hypothetical protein
220	 42.70	0	209263..210009	-	248	91772302	-	Mbur_0234	-	ArsR family transcriptional regulator
221	 44.14	0	210212..211294	+	360	91772303	-	Mbur_0235	-	hypothetical protein
222	 36.40	-1	211391..211651	+	86	91772304	-	Mbur_0236	-	hypothetical protein
223	 38.01	0	211740..212423	+	227	91772305	-	Mbur_0237	-	hypothetical protein
224	 39.39	0	213078..213539	+	153	91772306	-	Mbur_0239	-	cell surface protein
225	 37.32	-1	213548..214576	+	342	91772307	-	Mbur_0240	-	hypothetical protein
226	 38.23	0	214677..215003	+	108	91772308	-	Mbur_0241	-	hypothetical protein
227	 44.44	0	217249..217545	+	98	91772309	-	Mbur_0243	-	hypothetical protein
228	 34.59	-1	217893..218210	-	105	91772310	-	Mbur_0244	-	hypothetical protein
229	 46.70	+1	218268..219659	+	463	91772311	-	Mbur_0245	-	DEAD/DEAH box helicase-like protein
230	 42.89	0	219967..220740	-	257	91772312	-	Mbur_0246	-	hypothetical protein
231	 43.65	0	222529..224283	-	584	91772313	-	Mbur_0248	-	peptidase M50
232	 43.05	0	224408..224860	-	150	91772314	-	Mbur_0249	-	hypothetical protein
233	 45.25	0	225226..226056	+	276	91772315	-	Mbur_0250	-	fumarate hydratase
234	 43.11	0	226056..226628	+	190	91772316	-	Mbur_0251	-	fumarate hydratase
235	 42.25	0	226742..227728	-	328	91772317	-	Mbur_0252	-	type II secretion system protein
236	 40.39	0	227731..228651	-	306	91772318	-	Mbur_0253	-	type II secretion system protein
237	 39.85	0	228644..230608	-	654	91772319	-	Mbur_0254	-	type II secretion system protein E
238	 46.42	+1	230876..232396	+	506	91772320	-	Mbur_0255	-	thymidine phosphorylase
239	 47.49	+1	232402..232938	+	178	91772321	-	Mbur_0256	-	tRNA 2'-O-methylase
240	 32.32	-2	233028..234116	+	362	91772322	-	Mbur_0257	-	hypothetical protein
241	 43.86	0	234341..235081	-	246	91772323	-	Mbur_0258	-	hypothetical protein
242	 43.43	0	235446..236237	+	263	91772324	-	Mbur_0259	-	nicotinate-nucleotide diphosphorylase (carboxylating)
243	 41.49	0	236547..237098	-	183	91772325	-	Mbur_0260	-	hemerythrin HHE cation binding protein
244	 43.25	0	237318..237680	+	120	91772326	-	Mbur_0261	-	alkylhydroperoxidase family protein
245	 43.64	0	237923..239494	+	523	91772327	-	Mbur_0262	-	PAS/PAC sensor signal transduction histidine kinase
246	 43.14	0	239590..239793	-	67	91772328	-	Mbur_0263	-	hypothetical protein
247	 44.59	0	240041..240262	-	73	91772329	-	Mbur_0264	-	redox-active disulfide protein 2
248	 39.59	0	240793..242406	-	537	91772330	-	Mbur_0266	-	glycosyl transferase, group 1
249	 42.05	0	243533..246136	+	867	91772331	-	Mbur_0268	-	S-layer-related protein
250	 40.50	0	246344..247264	+	306	91772332	-	Mbur_0269	-	TM helix protein
251	 37.93	0	247461..248243	-	260	91772333	-	Mbur_0270	-	hypothetical protein
252	 33.78	-1	248623..249294	+	223	91772334	-	Mbur_0271	-	transposase, IS4
253	 37.52	0	249354..249998	-	214	91772335	-	Mbur_0272	-	multiple antibiotic resistance (MarC)-related proteins
254	 35.48	-1	250683..251522	-	279	91772336	-	Mbur_0273	-	GCN5-related N-acetyltransferase
255	 39.22	0	251519..252826	-	435	91772337	-	Mbur_0274	-	L-lysine 2,3-aminomutase
256	 35.58	-1	252981..253292	-	103	91772338	-	Mbur_0275	-	hypothetical protein
257	 37.87	0	253870..254244	-	124	91772339	-	Mbur_0277	-	hypothetical protein
258	 39.54	0	254241..254933	-	230	91772340	-	Mbur_0278	-	hypothetical protein
259	 34.28	-1	254975..256351	-	458	91772341	-	Mbur_0279	-	parallel beta-helix repeat-containing protein
260	 46.05	0	256573..257421	-	282	91772342	-	Mbur_0280	-	formate dehydrogenase family accessory protein FdhD
261	 47.25	+1	257424..258731	-	435	91772343	-	Mbur_0281	-	formylmethanofuran dehydrogenase, subunit B
262	 41.79	0	258733..259122	-	129	91772344	-	Mbur_0282	-	formylmethanofuran dehydrogenase, subunit D
263	 46.91	+1	259132..259941	-	269	91772345	-	Mbur_0283	-	formylmethanofuran dehydrogenase, subunit C
264	 46.61	+1	259946..261700	-	584	91772346	-	Mbur_0284	-	formylmethanofuran dehydrogenase, subunit A
265	 47.12	+1	261700..262722	-	340	91772347	-	Mbur_0285	-	formylmethanofuran dehydrogenase, subunit F
266	 43.99	0	262739..263329	-	196	91772348	-	Mbur_0286	-	formylmethanofuran dehydrogenase, subunit E
267	 45.49	0	263588..263875	-	95	91772349	-	Mbur_0287	-	hypothetical protein
268	 46.70	+1	263926..264561	-	211	91772350	-	Mbur_0288	-	nitrogen-fixing NifU-like protein
269	 44.79	0	264595..265764	-	389	91772351	-	Mbur_0289	-	aminotransferase, class V
270	 45.99	0	266191..266514	-	107	91772352	-	Mbur_0290	-	hypothetical protein
271	 36.46	-1	267847..268038	-	63	91772353	-	Mbur_0292	-	XRE family transcriptional regulator
272	 36.64	-1	268056..268448	-	130	91772354	-	Mbur_0293	-	hypothetical protein
273	 38.59	0	269259..270038	-	259	91772355	-	Mbur_0295	-	protein of unknown function DUF306, Meta and HslJ
274	 32.88	-1	270409..270846	-	145	91772356	-	Mbur_0296	-	hypothetical protein
275	 29.98	-2	270923..271489	+	188	91772357	-	Mbur_0297	-	hypothetical protein
276	 40.34	0	271941..273566	+	541	91772358	-	Mbur_0298	-	hypothetical protein
277	 38.92	0	273578..274831	+	417	91772359	-	Mbur_0299	-	hypothetical protein
278	 40.22	0	274896..275519	+	207	91772360	-	Mbur_0300	-	GTP-binding protein
279	 40.10	0	275534..276154	-	206	91772361	-	Mbur_0301	-	radical SAM family Fe-S protein
280	 39.84	0	276151..276519	-	122	91772362	-	Mbur_0302	-	hypothetical protein
281	 47.10	+1	276516..277706	-	396	91772363	-	Mbur_0303	-	geranylgeranyl reductase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.