IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2170	 44.90	0	2467769..2469082	-	437	91774252	-	Mbur_2340	-	phosphoesterase, RecJ-like protein
2171	 43.58	0	2469138..2470328	-	396	91774253	-	Mbur_2341	-	nucleotidyl transferase
2172	 46.16	0	2470325..2471626	-	433	91774254	-	Mbur_2342	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
2173	 41.36	0	2471646..2473490	-	614	91774255	-	Mbur_2343	-	glutamine--fructose-6-phosphate transaminase
2174	 39.82	0	2473502..2474719	-	405	91774256	-	Mbur_2344	-	nucleotidyl transferase
2175	 41.18	0	2474969..2475427	-	152	91774257	rps15p	Mbur_2345	-	30S ribosomal protein S15P
2176	 40.03	0	2475584..2476315	-	243	91774258	-	Mbur_2346	-	hypothetical protein
2177	 45.03	0	2476363..2476704	-	113	91774259	-	Mbur_2347	-	hypothetical protein
2178	 44.89	0	2476812..2477945	-	377	91774260	hisS	Mbur_2348	-	histidyl-tRNA synthetase
2179	 39.40	0	2484137..2485306	+	389	91774261	-	Mbur_2349	-	amidohydrolase
2180	 38.41	0	2485319..2485771	+	150	91774262	-	Mbur_2350	-	hypothetical protein
2181	 42.84	0	2485795..2486646	+	283	91774263	-	Mbur_2351	-	CBS domain-containing protein
2182	 42.88	0	2486717..2487397	+	226	91774264	-	Mbur_2352	-	hypothetical protein
2183	 41.97	0	2487547..2488044	+	165	91774265	-	Mbur_2353	-	thioredoxin
2184	 40.78	0	2488093..2488737	+	214	91774266	-	Mbur_2354	-	cytochrome c biogenesis protein
2185	 48.40	+1	2488849..2489598	-	249	91774267	-	Mbur_2355	-	precorrin-8X methylmutase
2186	 46.14	0	2489588..2490391	-	267	91774268	-	Mbur_2356	-	precorrin-3 methyltransferase
2187	 46.99	+1	2491219..2491950	-	243	91774269	-	Mbur_2358	-	precorrin-4 C11-methyltransferase / cobalt-factor II C20-methyltransferase
2188	 43.30	0	2491964..2492575	-	203	91774270	-	Mbur_2359	-	cobalt-precorrin-2 C(20)-methyltransferase
2189	 40.40	0	2492630..2493181	-	183	91774271	-	Mbur_2360	-	precorrin-8W decarboxylase
2190	 44.29	0	2493258..2494745	+	495	91774272	-	Mbur_2361	-	cobyric acid synthase
2191	 43.69	0	2495044..2496105	+	353	91774273	-	Mbur_2363	-	anthranilate phosphoribosyltransferase
2192	 44.69	0	2496059..2496727	+	222	91774274	-	Mbur_2364	-	phosphoribosylanthranilate isomerase
2193	 44.91	0	2496724..2498295	+	523	91774275	-	Mbur_2365	-	anthranilate synthase, component I
2194	 43.82	0	2498292..2498882	+	196	91774276	-	Mbur_2366	-	anthranilate synthase component II
2195	 46.77	+1	2498882..2499454	+	190	91774277	-	Mbur_2367	-	hypothetical protein
2196	 41.54	0	2499458..2499652	-	64	91774278	-	Mbur_2368	-	hypothetical protein
2197	 41.01	0	2499765..2500220	+	151	91774279	-	Mbur_2369	-	hypothetical protein
2198	 44.05	0	2500317..2500829	-	170	91774280	-	Mbur_2370	-	nicotinamide-nucleotide adenylyltransferase
2199	 47.09	+1	2500841..2501872	-	343	91774281	-	Mbur_2371	-	F420H2 dehydrogenase subunit F
2200	 48.13	+1	2501872..2502858	-	328	91774282	-	Mbur_2372	-	methylenetetrahydromethanopterin reductase
2201	 42.62	0	2503434..2503670	+	78	91774283	-	Mbur_2373	-	hypothetical protein
2202	 44.74	0	2503672..2503899	+	75	91774284	-	Mbur_2374	-	hypothetical protein
2203	 43.59	0	2503951..2504301	+	116	91774285	-	Mbur_2375	-	alkylhydroperoxidase-like protein
2204	 47.02	+1	2504452..2505825	+	457	91774286	-	Mbur_2376	-	hypothetical protein
2205	 44.76	0	2505841..2506470	+	209	91774287	-	Mbur_2377	-	NADPH-dependent FMN reductase
2206	 42.78	0	2506471..2507169	+	232	91774288	-	Mbur_2378	-	oxidoreductase FAD/NAD(P)-binding
2207	 45.14	0	2507219..2507794	+	191	91774289	-	Mbur_2379	-	rubrerythrin
2208	 44.38	0	2507809..2508351	+	180	91774290	-	Mbur_2380	-	flavoprotein
2209	 45.20	0	2508449..2509552	-	367	91774291	-	Mbur_2381	-	myo-inositol-1-phosphate synthase
2210	 45.43	0	2510333..2511547	+	404	91774292	-	Mbur_2383	-	beta-lactamase-like protein
2211	 39.86	0	2511584..2511859	+	91	91774293	-	Mbur_2384	-	hypothetical protein
2212	 44.15	0	2512102..2513673	+	523	91774294	-	Mbur_2385	-	D-3-phosphoglycerate dehydrogenase
2213	 42.86	0	2513745..2514227	+	160	91774295	-	Mbur_2386	-	hypothetical protein
2214	 43.16	0	2514227..2514694	+	155	91774296	-	Mbur_2387	-	hypothetical protein
2215	 45.93	0	2514827..2515207	+	126	91774297	-	Mbur_2388	-	50S ribosomal protein L18e
2216	 44.76	0	2515218..2515637	+	139	91774298	rpl13p	Mbur_2389	-	50S ribosomal protein L13P
2217	 44.20	0	2515651..2516055	+	134	91774299	rps9p	Mbur_2390	-	30S ribosomal protein S9P
2218	 47.62	+1	2516070..2516258	+	62	91774300	-	Mbur_2391	-	DNA-directed RNA polymerase subunit N
2219	 38.54	0	2516567..2516758	+	63	91774301	-	Mbur_2392	-	DNA-directed RNA polymerase, subunit K
2220	 43.57	0	2516772..2517416	+	214	91774302	rps2P	Mbur_2393	-	30S ribosomal protein S2
2221	 45.53	0	2517489..2518283	+	264	91774303	-	Mbur_2394	-	hypothetical protein
2222	 47.48	+1	2518305..2519216	+	303	91774304	-	Mbur_2395	-	mevalonate kinase
2223	 44.96	0	2519213..2519986	+	257	91774305	-	Mbur_2396	-	aspartate/glutamate/uridylate kinase
2224	 47.20	+1	2520012..2521100	+	362	91774306	-	Mbur_2397	-	isopentenyl pyrophosphate isomerase
2225	 44.87	0	2521197..2522540	+	447	91774307	-	Mbur_2398	-	beta-lactamase-like protein
2226	 44.99	0	2522569..2523537	+	322	91774308	-	Mbur_2399	-	farnesyltranstransferase
2227	 40.91	0	2523812..2525461	+	549	91774309	-	Mbur_2400	-	type II secretion system protein E
2228	 37.96	0	2525468..2527411	+	647	91774310	-	Mbur_2401	-	type II secretion system protein
2229	 38.96	0	2527433..2528338	+	301	91774311	-	Mbur_2402	-	hypothetical protein
2230	 37.63	0	2528370..2529485	-	371	91774312	-	Mbur_2403	-	PAS/PAC sensor signal transduction histidine kinase
2231	 43.50	0	2529721..2530782	+	353	91774313	-	Mbur_2404	-	radical SAM family Fe-S protein
2232	 40.84	0	2531275..2531607	-	110	91774314	-	Mbur_2405	-	ArsR family transcriptional regulator
2233	 32.33	-2	2531751..2532350	-	199	91774315	-	Mbur_2406	-	CTP:2,3-di-O-geranylgeranyl-sn-glycero-1-phosphate cytidyltransferase
2234	 41.15	0	2532418..2533569	-	383	91774316	-	Mbur_2407	-	glycosyltransferase
2235	 39.95	0	2533566..2534411	-	281	91774317	-	Mbur_2408	-	hypothetical protein
2236	 41.59	0	2534620..2535648	+	342	91774318	-	Mbur_2409	-	hypothetical protein
2237	 38.42	0	2535808..2536200	+	130	91774319	-	Mbur_2410	-	hypothetical protein
2238	 42.35	0	2536238..2537479	+	413	91774320	-	Mbur_2411	-	small GTP-binding protein
2239	 44.64	0	2537748..2538419	+	223	91774321	-	Mbur_2412	-	PHP-like protein
2240	 37.48	0	2538437..2539474	-	345	91774322	-	Mbur_2413	-	hypothetical protein
2241	 37.94	0	2539561..2541078	-	505	91774323	-	Mbur_2414	-	multisensor signal transduction histidine kinase
2242	 44.24	0	2541203..2542330	-	375	91774324	-	Mbur_2415	-	gamma-glutamyl kinase
2243	 44.96	0	2542356..2543705	-	449	91774325	-	Mbur_2416	-	glutamate-5-semialdehyde dehydrogenase
2244	 50.09	+1	2543958..2545676	-	572	91774326	-	Mbur_2417	-	methyl-coenzyme M reductase, alpha subunit
2245	 49.80	+1	2545691..2546437	-	248	91774327	-	Mbur_2418	-	methyl-coenzyme M reductase, gamma subunit
2246	 46.43	+1	2546451..2547053	-	200	91774328	-	Mbur_2419	-	methyl-coenzyme M reductase operon protein C
2247	 47.65	+1	2547059..2547547	-	162	91774329	-	Mbur_2420	-	methyl-coenzyme M reductase, protein D
2248	 47.28	+1	2547584..2548888	-	434	91774330	-	Mbur_2421	-	methyl-coenzyme M reductase, beta subunit
2249	 44.39	0	2549312..2550541	+	409	91774331	-	Mbur_2422	-	hypothetical protein
2250	 46.26	0	2550582..2554139	-	1185	91774332	-	Mbur_2423	-	DNA polymerase II large subunit
2251	 37.18	-1	2554163..2554630	+	155	91774333	-	Mbur_2424	-	hypothetical protein
2252	 46.50	+1	2554896..2556611	+	571	91774334	-	Mbur_2425	-	pyruvate carboxylase subunit B
2253	 46.03	0	2556626..2558122	+	498	91774335	-	Mbur_2426	-	pyruvate carboxylase subunit A
2254	 44.93	0	2558171..2559136	+	321	91774336	-	Mbur_2427	-	biotin--acetyl-CoA-carboxylase ligase
2255	 35.83	-1	2559140..2559700	+	186	91774337	-	Mbur_2428	-	hypothetical protein
2256	 41.34	0	2559910..2560833	-	307	91774338	-	Mbur_2429	-	phosphoserine phosphatase
2257	 42.44	0	2560830..2561543	-	237	91774339	-	Mbur_2430	-	hypothetical protein
2258	 44.33	0	2561521..2561811	-	96	91774340	-	Mbur_2431	-	hypothetical protein
2259	 46.44	+1	2561824..2563914	-	696	91774341	-	Mbur_2432	-	replicative DNA helicase Mcm
2260	 40.95	0	2564032..2564727	-	231	91774342	-	Mbur_2433	-	RNA methyltransferase TrmH, group 1
2261	 46.13	0	2564948..2565322	+	124	91774343	-	Mbur_2434	-	rubrerythrin
2262	 41.52	0	2565369..2566028	+	219	91774344	-	Mbur_2435	-	nitrite and sulphite reductase 4Fe-4S subunit
2263	 43.74	0	2566376..2567182	+	268	91774345	-	Mbur_2436	-	CoB-CoM heterodisulfide reductase, subunit E
2264	 47.52	+1	2567185..2568432	+	415	91774346	-	Mbur_2437	-	CoB-CoM heterodisulfide reductase, subunit D
2265	 38.84	0	2568532..2569167	+	211	91774347	-	Mbur_2438	-	hypothetical protein
2266	 39.55	0	2569160..2569786	+	208	91774348	-	Mbur_2439	-	hypothetical protein
2267	 46.32	0	2569962..2570246	+	94	91774349	-	Mbur_2440	-	hypothetical protein
2268	 41.75	0	2570324..2570905	+	193	91774350	-	Mbur_2441	-	hypothetical protein
2269	 37.79	0	2571041..2571982	-	313	91774351	-	Mbur_2442	-	transposase, IS4
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.