IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2140	 41.69	0	2438105..2439109	+	334	91774222	-	Mbur_2308	-	trimethylamine:corrinoid methyltransferase
2141	 42.34	0	2439155..2439598	+	147	91774223	-	Mbur_2309	-	trimethylamine:corrinoid methyltransferase
2142	 46.54	+1	2439640..2440290	+	216	91774224	-	Mbur_2310	-	trimethylamine corrinoid protein
2143	 44.73	0	2440487..2441530	+	347	91774225	-	Mbur_2311	-	trimethylamine transporter
2144	 39.39	0	2441532..2441828	+	98	91774226	-	Mbur_2312	-	hypothetical protein
2145	 34.43	-1	2442191..2443645	+	484	91774227	-	Mbur_2313	-	trimethylamine:corrinoid methyltransferase
2146	 35.31	-1	2443982..2444335	-	117	91774228	-	Mbur_2314	-	hypothetical protein
2147	 39.53	0	2446327..2446971	+	214	91774229	-	Mbur_2316	-	phage integrase
2148	 34.84	-1	2447547..2449268	-	573	91774230	-	Mbur_2318	-	tetratricopeptide protein
2149	 34.13	-1	2449271..2449648	-	125	91774231	-	Mbur_2319	-	hypothetical protein
2150	 36.75	-1	2450387..2451526	-	379	91774232	-	Mbur_2320	-	phage integrase
2151	 33.20	-1	2452197..2452919	+	240	91774233	-	Mbur_2321	-	hypothetical protein
2152	 47.37	+1	2453115..2454539	-	474	91774234	-	Mbur_2322	-	ribulose bisphosphate carboxylase
2153	 35.93	-1	2454717..2454947	-	76	91774235	-	Mbur_2323	-	putative ferredoxin
2154	 47.00	+1	2455047..2455346	-	99	91774236	-	Mbur_2324	-	carboxymuconolactone decarboxylase
2155	 41.98	0	2455521..2455844	+	107	91774237	-	Mbur_2325	-	small multidrug resistance protein
2156	 39.64	0	2455994..2456437	+	147	91774238	-	Mbur_2326	-	hypothetical protein
2157	 36.46	-1	2456691..2456978	-	95	91774239	-	Mbur_2327	-	hypothetical protein
2158	 44.16	0	2457419..2457880	-	153	91774240	-	Mbur_2328	-	peptide methionine sulfoxide reductase
2159	 40.09	0	2457893..2458321	-	142	91774241	-	Mbur_2329	-	methionine sulfoxide reductase B
2160	 40.53	0	2458939..2459355	+	138	91774242	-	Mbur_2330	-	hypothetical protein
2161	 42.86	0	2459411..2460334	+	307	91774243	-	Mbur_2331	-	MscS mechanosensitive ion channel
2162	 40.67	0	2460340..2460966	-	208	91774244	-	Mbur_2332	-	UbiE/COQ5 methyltransferase
2163	 45.93	0	2461119..2461856	+	245	91774245	-	Mbur_2333	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
2164	 41.00	0	2461856..2462155	+	99	91774246	-	Mbur_2334	-	hypothetical protein
2165	 45.79	0	2462223..2463932	+	569	91774247	gltX	Mbur_2335	-	glutamyl-tRNA synthetase
2166	 44.49	0	2464408..2465115	-	235	91774248	-	Mbur_2336	-	30S ribosomal protein S3Ae
2167	 48.51	+1	2465285..2466793	-	502	91774249	-	Mbur_2337	-	seryl-tRNA synthetase
2168	 47.03	+1	2466969..2467523	-	184	91774250	-	Mbur_2338	-	phage SPO1 DNA polymerase-related protein
2169	 42.08	0	2467520..2467759	-	79	91774251	-	Mbur_2339	-	hypothetical protein
2170	 44.90	0	2467769..2469082	-	437	91774252	-	Mbur_2340	-	phosphoesterase, RecJ-like protein
2171	 43.58	0	2469138..2470328	-	396	91774253	-	Mbur_2341	-	nucleotidyl transferase
2172	 46.16	0	2470325..2471626	-	433	91774254	-	Mbur_2342	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
2173	 41.36	0	2471646..2473490	-	614	91774255	-	Mbur_2343	-	glutamine--fructose-6-phosphate transaminase
2174	 39.82	0	2473502..2474719	-	405	91774256	-	Mbur_2344	-	nucleotidyl transferase
2175	 41.18	0	2474969..2475427	-	152	91774257	rps15p	Mbur_2345	-	30S ribosomal protein S15P
2176	 40.03	0	2475584..2476315	-	243	91774258	-	Mbur_2346	-	hypothetical protein
2177	 45.03	0	2476363..2476704	-	113	91774259	-	Mbur_2347	-	hypothetical protein
2178	 44.89	0	2476812..2477945	-	377	91774260	hisS	Mbur_2348	-	histidyl-tRNA synthetase
2179	 39.40	0	2484137..2485306	+	389	91774261	-	Mbur_2349	-	amidohydrolase
2180	 38.41	0	2485319..2485771	+	150	91774262	-	Mbur_2350	-	hypothetical protein
2181	 42.84	0	2485795..2486646	+	283	91774263	-	Mbur_2351	-	CBS domain-containing protein
2182	 42.88	0	2486717..2487397	+	226	91774264	-	Mbur_2352	-	hypothetical protein
2183	 41.97	0	2487547..2488044	+	165	91774265	-	Mbur_2353	-	thioredoxin
2184	 40.78	0	2488093..2488737	+	214	91774266	-	Mbur_2354	-	cytochrome c biogenesis protein
2185	 48.40	+1	2488849..2489598	-	249	91774267	-	Mbur_2355	-	precorrin-8X methylmutase
2186	 46.14	0	2489588..2490391	-	267	91774268	-	Mbur_2356	-	precorrin-3 methyltransferase
2187	 46.99	+1	2491219..2491950	-	243	91774269	-	Mbur_2358	-	precorrin-4 C11-methyltransferase / cobalt-factor II C20-methyltransferase
2188	 43.30	0	2491964..2492575	-	203	91774270	-	Mbur_2359	-	cobalt-precorrin-2 C(20)-methyltransferase
2189	 40.40	0	2492630..2493181	-	183	91774271	-	Mbur_2360	-	precorrin-8W decarboxylase
2190	 44.29	0	2493258..2494745	+	495	91774272	-	Mbur_2361	-	cobyric acid synthase
2191	 43.69	0	2495044..2496105	+	353	91774273	-	Mbur_2363	-	anthranilate phosphoribosyltransferase
2192	 44.69	0	2496059..2496727	+	222	91774274	-	Mbur_2364	-	phosphoribosylanthranilate isomerase
2193	 44.91	0	2496724..2498295	+	523	91774275	-	Mbur_2365	-	anthranilate synthase, component I
2194	 43.82	0	2498292..2498882	+	196	91774276	-	Mbur_2366	-	anthranilate synthase component II
2195	 46.77	+1	2498882..2499454	+	190	91774277	-	Mbur_2367	-	hypothetical protein
2196	 41.54	0	2499458..2499652	-	64	91774278	-	Mbur_2368	-	hypothetical protein
2197	 41.01	0	2499765..2500220	+	151	91774279	-	Mbur_2369	-	hypothetical protein
2198	 44.05	0	2500317..2500829	-	170	91774280	-	Mbur_2370	-	nicotinamide-nucleotide adenylyltransferase
2199	 47.09	+1	2500841..2501872	-	343	91774281	-	Mbur_2371	-	F420H2 dehydrogenase subunit F
2200	 48.13	+1	2501872..2502858	-	328	91774282	-	Mbur_2372	-	methylenetetrahydromethanopterin reductase
2201	 42.62	0	2503434..2503670	+	78	91774283	-	Mbur_2373	-	hypothetical protein
2202	 44.74	0	2503672..2503899	+	75	91774284	-	Mbur_2374	-	hypothetical protein
2203	 43.59	0	2503951..2504301	+	116	91774285	-	Mbur_2375	-	alkylhydroperoxidase-like protein
2204	 47.02	+1	2504452..2505825	+	457	91774286	-	Mbur_2376	-	hypothetical protein
2205	 44.76	0	2505841..2506470	+	209	91774287	-	Mbur_2377	-	NADPH-dependent FMN reductase
2206	 42.78	0	2506471..2507169	+	232	91774288	-	Mbur_2378	-	oxidoreductase FAD/NAD(P)-binding
2207	 45.14	0	2507219..2507794	+	191	91774289	-	Mbur_2379	-	rubrerythrin
2208	 44.38	0	2507809..2508351	+	180	91774290	-	Mbur_2380	-	flavoprotein
2209	 45.20	0	2508449..2509552	-	367	91774291	-	Mbur_2381	-	myo-inositol-1-phosphate synthase
2210	 45.43	0	2510333..2511547	+	404	91774292	-	Mbur_2383	-	beta-lactamase-like protein
2211	 39.86	0	2511584..2511859	+	91	91774293	-	Mbur_2384	-	hypothetical protein
2212	 44.15	0	2512102..2513673	+	523	91774294	-	Mbur_2385	-	D-3-phosphoglycerate dehydrogenase
2213	 42.86	0	2513745..2514227	+	160	91774295	-	Mbur_2386	-	hypothetical protein
2214	 43.16	0	2514227..2514694	+	155	91774296	-	Mbur_2387	-	hypothetical protein
2215	 45.93	0	2514827..2515207	+	126	91774297	-	Mbur_2388	-	50S ribosomal protein L18e
2216	 44.76	0	2515218..2515637	+	139	91774298	rpl13p	Mbur_2389	-	50S ribosomal protein L13P
2217	 44.20	0	2515651..2516055	+	134	91774299	rps9p	Mbur_2390	-	30S ribosomal protein S9P
2218	 47.62	+1	2516070..2516258	+	62	91774300	-	Mbur_2391	-	DNA-directed RNA polymerase subunit N
2219	 38.54	0	2516567..2516758	+	63	91774301	-	Mbur_2392	-	DNA-directed RNA polymerase, subunit K
2220	 43.57	0	2516772..2517416	+	214	91774302	rps2P	Mbur_2393	-	30S ribosomal protein S2
2221	 45.53	0	2517489..2518283	+	264	91774303	-	Mbur_2394	-	hypothetical protein
2222	 47.48	+1	2518305..2519216	+	303	91774304	-	Mbur_2395	-	mevalonate kinase
2223	 44.96	0	2519213..2519986	+	257	91774305	-	Mbur_2396	-	aspartate/glutamate/uridylate kinase
2224	 47.20	+1	2520012..2521100	+	362	91774306	-	Mbur_2397	-	isopentenyl pyrophosphate isomerase
2225	 44.87	0	2521197..2522540	+	447	91774307	-	Mbur_2398	-	beta-lactamase-like protein
2226	 44.99	0	2522569..2523537	+	322	91774308	-	Mbur_2399	-	farnesyltranstransferase
2227	 40.91	0	2523812..2525461	+	549	91774309	-	Mbur_2400	-	type II secretion system protein E
2228	 37.96	0	2525468..2527411	+	647	91774310	-	Mbur_2401	-	type II secretion system protein
2229	 38.96	0	2527433..2528338	+	301	91774311	-	Mbur_2402	-	hypothetical protein
2230	 37.63	0	2528370..2529485	-	371	91774312	-	Mbur_2403	-	PAS/PAC sensor signal transduction histidine kinase
2231	 43.50	0	2529721..2530782	+	353	91774313	-	Mbur_2404	-	radical SAM family Fe-S protein
2232	 40.84	0	2531275..2531607	-	110	91774314	-	Mbur_2405	-	ArsR family transcriptional regulator
2233	 32.33	-2	2531751..2532350	-	199	91774315	-	Mbur_2406	-	CTP:2,3-di-O-geranylgeranyl-sn-glycero-1-phosphate cytidyltransferase
2234	 41.15	0	2532418..2533569	-	383	91774316	-	Mbur_2407	-	glycosyltransferase
2235	 39.95	0	2533566..2534411	-	281	91774317	-	Mbur_2408	-	hypothetical protein
2236	 41.59	0	2534620..2535648	+	342	91774318	-	Mbur_2409	-	hypothetical protein
2237	 38.42	0	2535808..2536200	+	130	91774319	-	Mbur_2410	-	hypothetical protein
2238	 42.35	0	2536238..2537479	+	413	91774320	-	Mbur_2411	-	small GTP-binding protein
2239	 44.64	0	2537748..2538419	+	223	91774321	-	Mbur_2412	-	PHP-like protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.