IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2064	 44.96	0	2338592..2340079	-	495	91774146	-	Mbur_2225	-	polysaccharide biosynthesis protein
2065	 45.55	0	2340130..2342118	-	662	91774147	-	Mbur_2226	-	hypothetical protein
2066	 27.73	-2	2342162..2344465	-	767	91774148	-	Mbur_2227	-	hypothetical protein
2067	 30.32	-2	2344738..2345799	-	353	91774149	-	Mbur_2228	-	hypothetical protein
2068	 32.61	-2	2345801..2346625	-	274	91774150	-	Mbur_2229	-	glycosyl transferase family protein
2069	 47.03	+1	2346632..2347339	-	235	91774151	-	Mbur_2230	-	nucleotidyl transferase
2070	 46.44	+1	2347336..2348121	-	261	91774152	-	Mbur_2231	-	dTDP-4-dehydrorhamnose reductase
2071	 42.63	0	2348118..2349074	-	318	91774153	-	Mbur_2232	-	dTDP-glucose 4,6-dehydratase
2072	 38.41	0	2349114..2349665	-	183	91774154	-	Mbur_2233	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2073	 48.83	+1	2349914..2350855	-	313	91774155	-	Mbur_2234	-	NAD-dependent epimerase/dehydratase
2074	 38.89	0	2350954..2351241	-	95	91774156	-	Mbur_2235	-	hypothetical protein
2075	 42.15	0	2351255..2352241	-	328	91774157	-	Mbur_2236	-	nucleotidyl transferase
2076	 39.80	0	2352310..2353113	-	267	91774158	-	Mbur_2237	-	glycosyl transferase family protein
2077	 35.05	-1	2353618..2354316	+	232	91774159	-	Mbur_2238	-	hypothetical protein
2078	 40.82	0	2354328..2354594	-	88	91774160	-	Mbur_2239	-	hypothetical protein
2079	 41.57	0	2354757..2355023	-	88	91774161	-	Mbur_2240	-	hypothetical protein
2080	 36.13	-1	2355326..2356363	-	345	91774162	-	Mbur_2241	-	hypothetical protein
2081	 47.32	+1	2356783..2358276	-	497	91774163	-	Mbur_2242	-	replication factor C large subunit
2082	 44.64	0	2358365..2359222	+	285	91774164	-	Mbur_2243	-	N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase subunit X
2083	 45.44	0	2359759..2360691	+	310	161611176	-	Mbur_2244	-	N5-methyltetrahydromethanopterin
2084	 42.59	0	2361143..2362147	-	334	91774166	-	Mbur_2245	-	hypothetical protein
2085	 46.69	+1	2362742..2364403	-	553	91774167	-	Mbur_2246	-	dihydroxy-acid dehydratase
2086	 45.09	0	2364521..2366221	+	566	91774168	-	Mbur_2247	-	radical SAM family Fe-S protein
2087	 41.64	0	2367484..2368518	-	344	91774169	-	Mbur_2249	-	hypothetical protein
2088	 44.33	0	2368539..2369738	-	399	91774170	-	Mbur_2250	-	nucleotidyl transferase
2089	 36.79	-1	2370329..2371747	+	472	91774171	-	Mbur_2252	-	transposase
2090	 33.96	-1	2371790..2372584	-	264	91774172	-	Mbur_2253	-	transposase
2091	 42.78	0	2372703..2373083	-	126	91774173	-	Mbur_2254	-	nucleic acid binding protein
2092	 50.11	+1	2373093..2373551	-	152	91774174	-	Mbur_2255	-	peptidylprolyl isomerase, FKBP-type
2093	 47.25	+1	2373620..2374165	-	181	91774175	-	Mbur_2256	-	peptidylprolyl isomerase, FKBP-type
2094	 43.11	0	2374627..2375301	+	224	91774176	-	Mbur_2257	-	hypothetical protein
2095	 44.71	0	2375304..2375927	+	207	91774177	-	Mbur_2258	-	MotA/TolQ/ExbB proton channel
2096	 47.22	+1	2375924..2376283	+	119	91774178	-	Mbur_2259	-	hypothetical protein
2097	 42.45	0	2376446..2381698	+	1750	91774179	-	Mbur_2260	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
2098	 43.25	0	2381878..2383047	+	389	91774180	-	Mbur_2261	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
2099	 39.32	0	2384156..2384506	+	116	91774181	-	Mbur_2262	-	hypothetical protein
2100	 47.91	+1	2384662..2385903	+	413	91774182	-	Mbur_2263	-	3-isopropylmalate dehydratase, large subunit
2101	 41.31	0	2385926..2386138	+	70	91774183	-	Mbur_2264	-	hypothetical protein
2102	 45.26	0	2386992..2388182	-	396	91774184	-	Mbur_2265	-	hypothetical protein
2103	 47.60	+1	2388203..2388973	-	256	91774185	-	Mbur_2266	-	phosphoribosylaminoimidazole carboxylase related protein
2104	 41.47	0	2389106..2393665	+	1519	91774186	-	Mbur_2267	-	TPR repeat-containing protein
2105	 45.79	0	2393744..2396224	+	826	91774187	-	Mbur_2268	-	peptidase U32
2106	 44.22	0	2396226..2396813	+	195	91774188	-	Mbur_2269	-	maf protein
2107	 43.51	0	2396914..2397198	+	94	91774189	-	Mbur_2270	-	hypothetical protein
2108	 45.28	0	2398996..2399631	-	211	91774190	-	Mbur_2272	-	hypothetical protein
2109	 43.76	0	2399658..2400434	-	258	91774191	-	Mbur_2273	-	MscS mechanosensitive ion channel
2110	 37.50	0	2400960..2401463	+	167	91774192	-	Mbur_2274	-	MarR family transcriptional regulator
2111	 45.06	0	2401423..2403861	+	812	91774193	-	Mbur_2275	-	hydrophobe/amphiphile efflux-3 HAE3
2112	 42.88	0	2403858..2404967	+	369	91774194	-	Mbur_2276	-	hypothetical protein
2113	 42.95	0	2405010..2406122	+	370	91774195	-	Mbur_2277	-	hypothetical protein
2114	 45.88	0	2406345..2407571	+	408	91774196	-	Mbur_2278	-	translation initiation factor IF-2 subunit gamma
2115	 45.80	0	2407568..2407936	+	122	91774197	-	Mbur_2279	-	hypothetical protein
2116	 45.60	0	2407995..2408573	+	192	91774198	-	Mbur_2280	-	DNA-directed RNA polymerase subunit E'
2117	 44.62	0	2408590..2408775	+	61	91774199	-	Mbur_2281	-	DNA-directed RNA polymerase, subunit E''
2118	 41.09	0	2408795..2409361	+	188	91774200	-	Mbur_2282	-	hypothetical protein
2119	 43.04	0	2409351..2409659	+	102	91774201	rps24e	Mbur_2283	-	30S ribosomal protein S24e
2120	 44.00	0	2409662..2409811	+	49	91774202	-	Mbur_2284	-	30S ribosomal protein S27ae
2121	 39.95	0	2409908..2410300	-	130	91774203	-	Mbur_2285	-	response regulator receiver
2122	 40.84	0	2410314..2412818	-	834	91774204	-	Mbur_2286	-	multisensor signal transduction histidine kinase
2123	 39.42	0	2412836..2413624	-	262	91774205	-	Mbur_2287	-	hypothetical protein
2124	 47.93	+1	2414081..2414587	+	168	91774206	-	Mbur_2288	-	dimethylamine corrinoid protein
2125	 43.78	0	2416859..2418361	+	500	91774207	-	Mbur_2292	-	amino acid transporter
2126	 40.70	0	2418466..2419374	+	302	91774208	-	Mbur_2293	-	PAS sensor protein
2127	 43.46	0	2419440..2419844	+	134	91774209	-	Mbur_2294	-	response regulator receiver
2128	 36.56	-1	2420047..2420325	+	92	91774210	-	Mbur_2295	-	hypothetical protein
2129	 39.84	0	2421447..2421692	+	81	91774211	-	Mbur_2296	-	AbrB family transcriptional regulator
2130	 37.11	-1	2421773..2423254	-	493	91774212	-	Mbur_2297	-	transposase
2131	 35.42	-1	2423436..2423771	+	111	91774213	-	Mbur_2298	-	transcriptional modulator of MazE/toxin, MazF
2132	 40.33	0	2424176..2425204	+	342	91774214	-	Mbur_2299	-	phage integrase
2133	 45.59	0	2427827..2429074	-	415	91774215	-	Mbur_2301	-	proteasome-activating nucleotidase
2134	 43.92	0	2429581..2430477	+	298	91774216	-	Mbur_2302	-	hypothetical protein
2135	 44.88	0	2430664..2432646	+	660	91774217	-	Mbur_2303	-	excinuclease ABC subunit B
2136	 43.31	0	2433049..2433549	+	166	91774218	-	Mbur_2304	-	SOUL heme-binding protein
2137	 45.09	0	2433546..2434949	+	467	91774219	-	Mbur_2305	-	deoxyribodipyrimidine photo-lyase type I
2138	 42.36	0	2435002..2435433	+	143	91774220	-	Mbur_2306	-	MarR family transcriptional regulator
2139	 45.13	0	2435430..2436785	+	451	91774221	-	Mbur_2307	-	MATE efflux family protein
2140	 41.69	0	2438105..2439109	+	334	91774222	-	Mbur_2308	-	trimethylamine:corrinoid methyltransferase
2141	 42.34	0	2439155..2439598	+	147	91774223	-	Mbur_2309	-	trimethylamine:corrinoid methyltransferase
2142	 46.54	+1	2439640..2440290	+	216	91774224	-	Mbur_2310	-	trimethylamine corrinoid protein
2143	 44.73	0	2440487..2441530	+	347	91774225	-	Mbur_2311	-	trimethylamine transporter
2144	 39.39	0	2441532..2441828	+	98	91774226	-	Mbur_2312	-	hypothetical protein
2145	 34.43	-1	2442191..2443645	+	484	91774227	-	Mbur_2313	-	trimethylamine:corrinoid methyltransferase
2146	 35.31	-1	2443982..2444335	-	117	91774228	-	Mbur_2314	-	hypothetical protein
2147	 39.53	0	2446327..2446971	+	214	91774229	-	Mbur_2316	-	phage integrase
2148	 34.84	-1	2447547..2449268	-	573	91774230	-	Mbur_2318	-	tetratricopeptide protein
2149	 34.13	-1	2449271..2449648	-	125	91774231	-	Mbur_2319	-	hypothetical protein
2150	 36.75	-1	2450387..2451526	-	379	91774232	-	Mbur_2320	-	phage integrase
2151	 33.20	-1	2452197..2452919	+	240	91774233	-	Mbur_2321	-	hypothetical protein
2152	 47.37	+1	2453115..2454539	-	474	91774234	-	Mbur_2322	-	ribulose bisphosphate carboxylase
2153	 35.93	-1	2454717..2454947	-	76	91774235	-	Mbur_2323	-	putative ferredoxin
2154	 47.00	+1	2455047..2455346	-	99	91774236	-	Mbur_2324	-	carboxymuconolactone decarboxylase
2155	 41.98	0	2455521..2455844	+	107	91774237	-	Mbur_2325	-	small multidrug resistance protein
2156	 39.64	0	2455994..2456437	+	147	91774238	-	Mbur_2326	-	hypothetical protein
2157	 36.46	-1	2456691..2456978	-	95	91774239	-	Mbur_2327	-	hypothetical protein
2158	 44.16	0	2457419..2457880	-	153	91774240	-	Mbur_2328	-	peptide methionine sulfoxide reductase
2159	 40.09	0	2457893..2458321	-	142	91774241	-	Mbur_2329	-	methionine sulfoxide reductase B
2160	 40.53	0	2458939..2459355	+	138	91774242	-	Mbur_2330	-	hypothetical protein
2161	 42.86	0	2459411..2460334	+	307	91774243	-	Mbur_2331	-	MscS mechanosensitive ion channel
2162	 40.67	0	2460340..2460966	-	208	91774244	-	Mbur_2332	-	UbiE/COQ5 methyltransferase
2163	 45.93	0	2461119..2461856	+	245	91774245	-	Mbur_2333	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.