IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.89   STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1999	 43.60	0	2259144..2259659	-	171	91774081	-	Mbur_2153	-	hypothetical protein
2000	 45.25	0	2259819..2260775	+	318	91774082	-	Mbur_2154	-	dihydrouridine synthase, DuS
2001	 48.25	+1	2261114..2261656	+	180	91774083	-	Mbur_2155	-	pyruvate ferredoxin oxidoreductase subunit gamma
2002	 45.21	0	2261660..2261920	+	86	91774084	-	Mbur_2156	-	pyruvate ferredoxin oxidoreductase, delta subunit
2003	 46.01	0	2261921..2263135	+	404	91774085	-	Mbur_2157	-	pyruvate ferredoxin oxidoreductase, alpha subunit
2004	 47.03	+1	2263132..2264007	+	291	91774086	-	Mbur_2158	-	pyruvate ferredoxin oxidoreductase, beta subunit
2005	 46.42	+1	2264088..2265470	-	460	91774087	-	Mbur_2159	-	Na+/alanine symporter
2006	 37.79	0	2265695..2266636	+	313	91774088	-	Mbur_2160	-	transposase, IS4
2007	 36.40	-1	2268050..2271247	+	1065	91774089	-	Mbur_2162	-	helicase-like protein
2008	 37.22	-1	2271249..2274563	+	1104	91774090	-	Mbur_2163	-	hypothetical protein
2009	 44.70	0	2274560..2275219	+	219	91774091	-	Mbur_2164	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
2010	 40.73	0	2275300..2276043	+	247	91774092	-	Mbur_2165	-	hypothetical protein
2011	 48.58	+1	2276183..2277277	+	364	91774093	-	Mbur_2166	-	DNA-directed DNA polymerase
2012	 31.55	-2	2277570..2278466	+	298	91774094	-	Mbur_2167	-	hypothetical protein
2013	 37.45	0	2278585..2278827	-	80	91774095	-	Mbur_2168	-	hypothetical protein
2014	 36.30	-1	2279176..2279478	-	100	91774096	-	Mbur_2169	-	hypothetical protein
2015	 37.79	0	2281632..2282573	+	313	91774097	-	Mbur_2173	-	transposase, IS4
2016	 35.03	-1	2283502..2284974	+	490	91774098	-	Mbur_2175	-	HEAT repeat-containing PBS lyase
2017	 40.07	0	2284997..2285278	-	93	91774099	-	Mbur_2176	-	hypothetical protein
2018	 47.53	+1	2285245..2288865	-	1206	91774100	-	Mbur_2177	-	5-oxoprolinase (ATP-hydrolyzing)
2019	 42.71	0	2288921..2289421	+	166	91774101	-	Mbur_2178	-	phosphoesterase, PA-phosphatase related
2020	 44.71	0	2289462..2290850	-	462	91774102	-	Mbur_2179	-	amidophosphoribosyltransferase
2021	 43.27	0	2290877..2291047	-	56	91774103	rpl37e	Mbur_2180	-	50S ribosomal protein L37e
2022	 43.38	0	2291163..2291381	-	72	91774104	-	Mbur_2181	-	small nuclear ribonucleoprotein
2023	 48.80	+1	2291633..2293003	+	456	91774105	-	Mbur_2182	-	phosphomethylpyrimidine kinase
2024	 45.95	0	2293041..2293571	-	176	91774106	-	Mbur_2183	-	hypothetical protein
2025	 47.46	+1	2293631..2296228	-	865	91774107	valS	Mbur_2184	-	valyl-tRNA synthetase
2026	 42.67	0	2296365..2297435	-	356	91774108	-	Mbur_2185	-	response regulator receiver
2027	 46.18	0	2297727..2300498	-	923	91774109	alaS	Mbur_2186	-	alanyl-tRNA synthetase
2028	 40.94	0	2300798..2301073	+	91	91774110	-	Mbur_2187	-	hypothetical protein
2029	 46.18	0	2301184..2301969	+	261	91774111	surE	Mbur_2188	-	stationary phase survival protein SurE
2030	 42.23	0	2302062..2303714	-	550	91774112	-	Mbur_2189	-	sulphate transporter
2031	 44.51	0	2304262..2305218	-	318	91774113	moaA	Mbur_2190	-	molybdenum cofactor biosynthesis protein A
2032	 44.67	0	2305257..2306615	+	452	91774114	-	Mbur_2191	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
2033	 45.66	0	2306620..2307714	-	364	91774115	-	Mbur_2192	-	DNA primase large subunit
2034	 43.50	0	2307716..2308453	-	245	91774116	-	Mbur_2193	-	DNA polymerase sliding clamp
2035	 42.63	0	2308546..2308857	-	103	91774117	-	Mbur_2194	-	DNA-directed RNA polymerase, subunit M
2036	 43.81	0	2308835..2309254	-	139	91774118	-	Mbur_2195	-	NUDIX hydrolase
2037	 40.10	0	2309321..2310133	+	270	91774119	-	Mbur_2196	-	hypothetical protein
2038	 42.90	0	2310145..2310771	+	208	91774120	-	Mbur_2197	-	phosphatidylserine decarboxylase
2039	 38.16	0	2310768..2311451	+	227	91774121	-	Mbur_2198	-	archaetidylserine synthase
2040	 45.40	0	2311498..2314107	-	869	91774122	-	Mbur_2199	-	ATPase AAA-2
2041	 35.33	-1	2314309..2315709	+	466	91774123	-	Mbur_2200	-	PAS sensor protein
2042	 36.17	-1	2315702..2317603	+	633	91774124	-	Mbur_2201	-	multisensor signal transduction histidine kinase
2043	 42.01	0	2317665..2318033	+	122	91774125	-	Mbur_2202	-	hypothetical protein
2044	 45.98	0	2318050..2319132	-	360	91774126	-	Mbur_2203	-	histidinol-phosphate aminotransferase
2045	 47.57	+1	2319119..2320291	-	390	91774127	-	Mbur_2204	-	acetylornithine aminotransferase
2046	 44.04	0	2320319..2321149	-	276	91774128	-	Mbur_2205	-	hypothetical protein
2047	 46.71	+1	2321312..2321782	-	156	91774129	-	Mbur_2206	-	PUA domain-containing protein
2048	 48.46	+1	2322145..2323605	-	486	91774130	-	Mbur_2207	-	hypothetical protein
2049	 40.36	0	2323663..2324103	-	146	91774131	-	Mbur_2208	-	archease family protein
2050	 47.95	+1	2324173..2324781	-	202	91774132	-	Mbur_2209	-	CDP-alcohol phosphatidyltransferase
2051	 44.20	0	2324874..2325425	-	183	91774133	-	Mbur_2210	-	L-fuculose phosphate aldolase
2052	 36.59	-1	2325633..2325878	+	81	91774134	-	Mbur_2211	-	hypothetical protein
2053	 37.84	0	2326867..2327421	-	184	91774135	-	Mbur_2213	-	hypothetical protein
2054	 36.38	-1	2328686..2329963	+	425	91774136	-	Mbur_2214	-	hypothetical protein
2055	 37.78	0	2329976..2330155	-	59	91774137	-	Mbur_2215	-	hypothetical protein
2056	 38.46	0	2330451..2330606	-	51	91774138	-	Mbur_2216	-	hypothetical protein
2057	 33.56	-1	2330739..2331176	+	145	91774139	-	Mbur_2217	-	hypothetical protein
2058	 44.71	0	2331380..2332249	-	289	91774140	-	Mbur_2218	-	nitrite and sulphite reductase 4Fe-4S subunit
2059	 42.94	0	2332439..2333593	+	384	91774141	-	Mbur_2219	-	major facilitator transporter
2060	 39.64	0	2333666..2334172	+	168	91774142	-	Mbur_2220	-	methylated-DNA--protein-cysteine methyltransferase
2061	 46.30	0	2334769..2335647	-	292	91774143	-	Mbur_2222	-	hypothetical protein
2062	 38.79	0	2335800..2337926	-	708	91774144	-	Mbur_2223	-	hypothetical protein
2063	 43.56	0	2337939..2338505	-	188	91774145	-	Mbur_2224	-	hypothetical protein
2064	 44.96	0	2338592..2340079	-	495	91774146	-	Mbur_2225	-	polysaccharide biosynthesis protein
2065	 45.55	0	2340130..2342118	-	662	91774147	-	Mbur_2226	-	hypothetical protein
2066	 27.73	-2	2342162..2344465	-	767	91774148	-	Mbur_2227	-	hypothetical protein
2067	 30.32	-2	2344738..2345799	-	353	91774149	-	Mbur_2228	-	hypothetical protein
2068	 32.61	-2	2345801..2346625	-	274	91774150	-	Mbur_2229	-	glycosyl transferase family protein
2069	 47.03	+1	2346632..2347339	-	235	91774151	-	Mbur_2230	-	nucleotidyl transferase
2070	 46.44	+1	2347336..2348121	-	261	91774152	-	Mbur_2231	-	dTDP-4-dehydrorhamnose reductase
2071	 42.63	0	2348118..2349074	-	318	91774153	-	Mbur_2232	-	dTDP-glucose 4,6-dehydratase
2072	 38.41	0	2349114..2349665	-	183	91774154	-	Mbur_2233	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2073	 48.83	+1	2349914..2350855	-	313	91774155	-	Mbur_2234	-	NAD-dependent epimerase/dehydratase
2074	 38.89	0	2350954..2351241	-	95	91774156	-	Mbur_2235	-	hypothetical protein
2075	 42.15	0	2351255..2352241	-	328	91774157	-	Mbur_2236	-	nucleotidyl transferase
2076	 39.80	0	2352310..2353113	-	267	91774158	-	Mbur_2237	-	glycosyl transferase family protein
2077	 35.05	-1	2353618..2354316	+	232	91774159	-	Mbur_2238	-	hypothetical protein
2078	 40.82	0	2354328..2354594	-	88	91774160	-	Mbur_2239	-	hypothetical protein
2079	 41.57	0	2354757..2355023	-	88	91774161	-	Mbur_2240	-	hypothetical protein
2080	 36.13	-1	2355326..2356363	-	345	91774162	-	Mbur_2241	-	hypothetical protein
2081	 47.32	+1	2356783..2358276	-	497	91774163	-	Mbur_2242	-	replication factor C large subunit
2082	 44.64	0	2358365..2359222	+	285	91774164	-	Mbur_2243	-	N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase subunit X
2083	 45.44	0	2359759..2360691	+	310	161611176	-	Mbur_2244	-	N5-methyltetrahydromethanopterin
2084	 42.59	0	2361143..2362147	-	334	91774166	-	Mbur_2245	-	hypothetical protein
2085	 46.69	+1	2362742..2364403	-	553	91774167	-	Mbur_2246	-	dihydroxy-acid dehydratase
2086	 45.09	0	2364521..2366221	+	566	91774168	-	Mbur_2247	-	radical SAM family Fe-S protein
2087	 41.64	0	2367484..2368518	-	344	91774169	-	Mbur_2249	-	hypothetical protein
2088	 44.33	0	2368539..2369738	-	399	91774170	-	Mbur_2250	-	nucleotidyl transferase
2089	 36.79	-1	2370329..2371747	+	472	91774171	-	Mbur_2252	-	transposase
2090	 33.96	-1	2371790..2372584	-	264	91774172	-	Mbur_2253	-	transposase
2091	 42.78	0	2372703..2373083	-	126	91774173	-	Mbur_2254	-	nucleic acid binding protein
2092	 50.11	+1	2373093..2373551	-	152	91774174	-	Mbur_2255	-	peptidylprolyl isomerase, FKBP-type
2093	 47.25	+1	2373620..2374165	-	181	91774175	-	Mbur_2256	-	peptidylprolyl isomerase, FKBP-type
2094	 43.11	0	2374627..2375301	+	224	91774176	-	Mbur_2257	-	hypothetical protein
2095	 44.71	0	2375304..2375927	+	207	91774177	-	Mbur_2258	-	MotA/TolQ/ExbB proton channel
2096	 47.22	+1	2375924..2376283	+	119	91774178	-	Mbur_2259	-	hypothetical protein
2097	 42.45	0	2376446..2381698	+	1750	91774179	-	Mbur_2260	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
2098	 43.25	0	2381878..2383047	+	389	91774180	-	Mbur_2261	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
41.89	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.