IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1934	 43.25	0	2187160..2188248	-	362	91774016	-	Mbur_2084	-	hypothetical protein
1935	 44.35	0	2188250..2189302	-	350	91774017	-	Mbur_2085	-	biotin synthase
1936	 44.84	0	2189313..2190563	-	416	91774018	pylS	Mbur_2086	-	pyrolysyl-tRNA synthetase
1937	 46.09	0	2191079..2192575	+	498	91774019	-	Mbur_2087	-	L-threonine O-3-phosphate decarboxylase
1938	 44.88	0	2192647..2193261	+	204	91774020	-	Mbur_2088	-	putative nucleotidyltransferase
1939	 46.69	+1	2193426..2194922	+	498	91774021	-	Mbur_2089	-	L-threonine O-3-phosphate decarboxylase
1940	 41.87	0	2194919..2195914	+	331	91774022	-	Mbur_2090	-	adenosylcobinamide-phosphate synthase
1941	 42.86	0	2195937..2196524	+	195	91774023	-	Mbur_2091	-	hypothetical protein
1942	 43.75	0	2196521..2197336	+	271	91774024	-	Mbur_2092	-	cobalamin-5'-phosphate synthase
1943	 43.23	0	2197336..2197941	+	201	91774025	-	Mbur_2093	-	putative nucleotidyltransferase
1944	 38.17	0	2197957..2198328	+	123	91774026	-	Mbur_2094	-	hypothetical protein
1945	 43.85	0	2198510..2199241	+	243	91774027	-	Mbur_2095	-	KaiC
1946	 42.07	0	2199311..2199997	-	228	91774028	-	Mbur_2096	-	hypothetical protein
1947	 41.60	0	2200106..2200480	+	124	91774029	-	Mbur_2097	-	transcriptional regulator TrmB
1948	 27.56	-2	2200723..2201103	-	126	91774030	-	Mbur_2098	-	hypothetical protein
1949	 47.28	+1	2201600..2202775	-	391	91774031	-	Mbur_2099	-	aminotransferase
1950	 43.90	0	2202824..2203315	-	163	91774032	-	Mbur_2100	-	AsnC family transcriptional regulator
1951	 46.30	0	2203359..2203736	-	125	91774033	-	Mbur_2101	-	30S ribosomal protein S8e
1952	 45.42	0	2203919..2204836	+	305	91774034	-	Mbur_2102	-	ribonuclease Z
1953	 38.26	0	2204909..2205619	+	236	91774035	-	Mbur_2103	-	hypothetical protein
1954	 37.11	-1	2205679..2207160	+	493	91774036	-	Mbur_2104	-	transposase
1955	 40.74	0	2207410..2207679	-	89	91774037	-	Mbur_2105	-	hypothetical protein
1956	 42.92	0	2207720..2208835	-	371	91774038	-	Mbur_2106	-	AAA ATPase
1957	 41.13	0	2209185..2209556	+	123	91774039	-	Mbur_2107	-	response regulator receiver protein
1958	 43.20	0	2209577..2211055	+	492	91774040	-	Mbur_2108	-	multisensor signal transduction histidine kinase
1959	 46.59	+1	2211203..2211979	+	258	91774041	-	Mbur_2109	-	ribulose-1,5-biphosphate synthetase
1960	 41.95	0	2212335..2212682	-	115	91774042	-	Mbur_2110	-	hypothetical protein
1961	 46.42	+1	2212804..2213613	-	269	91774043	-	Mbur_2111	-	pyrroline-5-carboxylate reductase
1962	 43.64	0	2213693..2214187	-	164	91774044	-	Mbur_2112	-	XRE family transcriptional regulator
1963	 46.45	+1	2214269..2215549	+	426	91774045	-	Mbur_2113	-	proteasome-activating nucleotidase
1964	 47.81	+1	2216140..2217486	-	448	91774046	-	Mbur_2115	-	phosphoglucosamine mutase
1965	 47.30	+1	2217577..2217891	+	104	91774047	-	Mbur_2116	-	signal recognition particle protein Srp19
1966	 44.07	0	2218040..2218216	-	58	91774048	-	Mbur_2117	-	preprotein translocase subunit SecG
1967	 45.69	0	2218259..2219278	-	339	91774049	-	Mbur_2118	-	translation initiation factor IF-2B subunit alpha
1968	 36.31	-1	2219343..2221091	-	582	91774050	-	Mbur_2119	-	multisensor signal transduction histidine kinase
1969	 34.55	-1	2221351..2223399	-	682	91774051	-	Mbur_2120	-	multisensor signal transduction histidine kinase
1970	 44.62	0	2223638..2225488	+	616	91774052	-	Mbur_2121	-	metal-dependent phosphohydrolase
1971	 44.89	0	2225485..2226237	+	250	91774053	-	Mbur_2122	-	putative methyltransferase
1972	 44.54	0	2226243..2226920	-	225	91774054	radB	Mbur_2123	-	DNA repair and recombination protein RadB
1973	 37.30	-1	2227350..2227601	+	83	91774055	-	Mbur_2124	-	glutaredoxin-like protein
1974	 46.02	0	2227615..2230002	+	795	91774056	-	Mbur_2125	-	ribonucleoside-triphosphate reductase, anaerobic
1975	 42.75	0	2230025..2230810	+	261	91774057	-	Mbur_2126	-	ribonucleoside-triphosphate reductase, anaerobic-like protein
1976	 39.91	0	2230877..2231728	+	283	91774058	-	Mbur_2127	-	hypothetical protein
1977	 44.98	0	2231778..2232773	+	331	91774059	-	Mbur_2128	-	thiamine-monophosphate kinase
1978	 41.63	0	2232800..2236714	+	1304	91774060	-	Mbur_2129	-	S-layer-like domain-containing protein
1979	 45.04	0	2236853..2237356	-	167	91774061	-	Mbur_2130	-	XRE family transcriptional regulator
1980	 47.29	+1	2237566..2238525	+	319	91774062	-	Mbur_2131	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1981	 44.74	0	2238602..2239390	+	262	91774063	-	Mbur_2132	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
1982	 45.59	0	2239390..2240148	+	252	91774064	-	Mbur_2133	-	ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit
1983	 38.70	0	2240163..2240609	-	148	91774065	-	Mbur_2134	-	hypothetical protein
1984	 37.79	0	2243628..2244569	-	313	91774066	-	Mbur_2137	-	transposase, IS4
1985	 42.70	0	2245184..2245888	-	234	91774067	-	Mbur_2139	-	hypothetical protein
1986	 44.46	0	2245911..2247725	-	604	91774068	-	Mbur_2140	-	ribonucleoside-triphosphate reductase, anaerobic
1987	 44.68	0	2247896..2248732	-	278	91774069	-	Mbur_2141	-	ATP-binding protein involved in chromosome partitioning
1988	 44.75	0	2248769..2249092	-	107	91774070	-	Mbur_2142	-	hypothetical protein
1989	 42.95	0	2249293..2250405	+	370	91774071	cdc6	Mbur_2143	-	cell division control protein 6
1990	 44.05	0	2250412..2250999	+	195	91774072	-	Mbur_2144	-	molybdenum-pterin binding domain-containing protein
1991	 44.71	0	2251030..2251785	+	251	91774073	-	Mbur_2145	-	exodeoxyribonuclease III
1992	 49.11	+1	2251929..2253557	-	542	91774074	-	Mbur_2146	-	thermosome, chaperonin Cpn60/TCP-1
1993	 43.10	0	2253863..2254036	-	57	91774075	-	Mbur_2147	-	hypothetical protein
1994	 43.15	0	2254304..2255566	+	420	91774076	-	Mbur_2148	-	hypothetical protein
1995	 48.07	+1	2255559..2257376	+	605	91774077	-	Mbur_2149	-	ATPase
1996	 45.03	0	2257703..2257873	+	56	91774078	-	Mbur_2150	-	hypothetical protein
1997	 47.29	+1	2257924..2258697	-	257	91774079	-	Mbur_2151	-	xylose isomerase-like TIM barrel
1998	 45.58	0	2258707..2259147	-	146	91774080	-	Mbur_2152	-	hypothetical protein
1999	 43.60	0	2259144..2259659	-	171	91774081	-	Mbur_2153	-	hypothetical protein
2000	 45.25	0	2259819..2260775	+	318	91774082	-	Mbur_2154	-	dihydrouridine synthase, DuS
2001	 48.25	+1	2261114..2261656	+	180	91774083	-	Mbur_2155	-	pyruvate ferredoxin oxidoreductase subunit gamma
2002	 45.21	0	2261660..2261920	+	86	91774084	-	Mbur_2156	-	pyruvate ferredoxin oxidoreductase, delta subunit
2003	 46.01	0	2261921..2263135	+	404	91774085	-	Mbur_2157	-	pyruvate ferredoxin oxidoreductase, alpha subunit
2004	 47.03	+1	2263132..2264007	+	291	91774086	-	Mbur_2158	-	pyruvate ferredoxin oxidoreductase, beta subunit
2005	 46.42	+1	2264088..2265470	-	460	91774087	-	Mbur_2159	-	Na+/alanine symporter
2006	 37.79	0	2265695..2266636	+	313	91774088	-	Mbur_2160	-	transposase, IS4
2007	 36.40	-1	2268050..2271247	+	1065	91774089	-	Mbur_2162	-	helicase-like protein
2008	 37.22	-1	2271249..2274563	+	1104	91774090	-	Mbur_2163	-	hypothetical protein
2009	 44.70	0	2274560..2275219	+	219	91774091	-	Mbur_2164	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
2010	 40.73	0	2275300..2276043	+	247	91774092	-	Mbur_2165	-	hypothetical protein
2011	 48.58	+1	2276183..2277277	+	364	91774093	-	Mbur_2166	-	DNA-directed DNA polymerase
2012	 31.55	-2	2277570..2278466	+	298	91774094	-	Mbur_2167	-	hypothetical protein
2013	 37.45	0	2278585..2278827	-	80	91774095	-	Mbur_2168	-	hypothetical protein
2014	 36.30	-1	2279176..2279478	-	100	91774096	-	Mbur_2169	-	hypothetical protein
2015	 37.79	0	2281632..2282573	+	313	91774097	-	Mbur_2173	-	transposase, IS4
2016	 35.03	-1	2283502..2284974	+	490	91774098	-	Mbur_2175	-	HEAT repeat-containing PBS lyase
2017	 40.07	0	2284997..2285278	-	93	91774099	-	Mbur_2176	-	hypothetical protein
2018	 47.53	+1	2285245..2288865	-	1206	91774100	-	Mbur_2177	-	5-oxoprolinase (ATP-hydrolyzing)
2019	 42.71	0	2288921..2289421	+	166	91774101	-	Mbur_2178	-	phosphoesterase, PA-phosphatase related
2020	 44.71	0	2289462..2290850	-	462	91774102	-	Mbur_2179	-	amidophosphoribosyltransferase
2021	 43.27	0	2290877..2291047	-	56	91774103	rpl37e	Mbur_2180	-	50S ribosomal protein L37e
2022	 43.38	0	2291163..2291381	-	72	91774104	-	Mbur_2181	-	small nuclear ribonucleoprotein
2023	 48.80	+1	2291633..2293003	+	456	91774105	-	Mbur_2182	-	phosphomethylpyrimidine kinase
2024	 45.95	0	2293041..2293571	-	176	91774106	-	Mbur_2183	-	hypothetical protein
2025	 47.46	+1	2293631..2296228	-	865	91774107	valS	Mbur_2184	-	valyl-tRNA synthetase
2026	 42.67	0	2296365..2297435	-	356	91774108	-	Mbur_2185	-	response regulator receiver
2027	 46.18	0	2297727..2300498	-	923	91774109	alaS	Mbur_2186	-	alanyl-tRNA synthetase
2028	 40.94	0	2300798..2301073	+	91	91774110	-	Mbur_2187	-	hypothetical protein
2029	 46.18	0	2301184..2301969	+	261	91774111	surE	Mbur_2188	-	stationary phase survival protein SurE
2030	 42.23	0	2302062..2303714	-	550	91774112	-	Mbur_2189	-	sulphate transporter
2031	 44.51	0	2304262..2305218	-	318	91774113	moaA	Mbur_2190	-	molybdenum cofactor biosynthesis protein A
2032	 44.67	0	2305257..2306615	+	452	91774114	-	Mbur_2191	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
2033	 45.66	0	2306620..2307714	-	364	91774115	-	Mbur_2192	-	DNA primase large subunit
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.