IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1904	 39.61	0	2160498..2160704	+	68	91773986	-	Mbur_2052	-	hypothetical protein
1905	 36.78	-1	2160998..2161345	-	115	91773987	-	Mbur_2053	-	hypothetical protein
1906	 36.78	-1	2161342..2161689	-	115	91773988	-	Mbur_2054	-	voltage-dependent potassium channel
1907	 41.73	0	2161723..2162091	-	122	91773989	-	Mbur_2055	-	hypothetical protein
1908	 35.40	-1	2162088..2162426	-	112	91773990	-	Mbur_2056	-	hypothetical protein
1909	 34.43	-1	2162434..2162982	-	182	91773991	-	Mbur_2057	-	hypothetical protein
1910	 34.70	-1	2163020..2163895	-	291	91773992	-	Mbur_2058	-	ABC transporter, ATPase subunit
1911	 30.40	-2	2163952..2164701	-	249	91773993	-	Mbur_2059	-	hypothetical protein
1912	 33.33	-1	2164708..2165076	-	122	91773994	-	Mbur_2060	-	hypothetical protein
1913	 41.44	0	2165139..2165582	-	147	91773995	-	Mbur_2061	-	hypothetical protein
1914	 39.88	0	2166194..2167171	-	325	91773996	-	Mbur_2062	-	cytochrome c biogenesis protein
1915	 32.65	-2	2167168..2168343	-	391	91773997	-	Mbur_2063	-	hypothetical protein
1916	 40.13	0	2168677..2169309	-	210	91773998	-	Mbur_2064	-	hypothetical protein
1917	 40.65	0	2170153..2170890	+	245	91773999	-	Mbur_2065	-	UbiA prenyltransferase
1918	 39.21	0	2170876..2171556	-	226	91774000	-	Mbur_2066	-	AsnC family transcriptional regulator
1919	 46.56	+1	2172567..2173745	-	392	91774001	-	Mbur_2068	-	aminotransferase, class V
1920	 46.29	0	2174110..2175390	+	426	91774002	-	Mbur_2069	-	hypothetical protein
1921	 44.81	0	2175395..2176039	+	214	91774003	-	Mbur_2070	-	TfuA-like protein
1922	 43.15	0	2176042..2176479	-	145	91774004	-	Mbur_2071	-	iron dependent repressor
1923	 44.68	0	2176538..2177383	-	281	91774005	-	Mbur_2072	-	NUDIX hydrolase
1924	 44.04	0	2177449..2178756	-	435	91774006	-	Mbur_2073	-	hypothetical protein
1925	 40.94	0	2180605..2180985	-	126	91774007	-	Mbur_2075	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1926	 44.44	0	2181068..2181724	-	218	91774008	-	Mbur_2076	-	beta-lactamase-like protein
1927	 41.67	0	2181724..2182299	-	191	91774009	-	Mbur_2077	-	hypothetical protein
1928	 40.82	0	2182296..2183123	-	275	91774010	-	Mbur_2078	-	4Fe-4S ferredoxin, iron-sulfur binding
1929	 43.31	0	2183258..2183638	-	126	91774011	-	Mbur_2079	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1930	 44.69	0	2183640..2184053	-	137	91774012	-	Mbur_2080	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1931	 45.11	0	2184214..2185011	+	265	91774013	-	Mbur_2081	-	bacitracin resistance protein BacA
1932	 48.99	+1	2185134..2186168	-	344	91774014	-	Mbur_2082	-	methylcobalamin:coenzyme M methyltransferase
1933	 46.54	+1	2186375..2187154	-	259	91774015	-	Mbur_2083	-	hypothetical protein
1934	 43.25	0	2187160..2188248	-	362	91774016	-	Mbur_2084	-	hypothetical protein
1935	 44.35	0	2188250..2189302	-	350	91774017	-	Mbur_2085	-	biotin synthase
1936	 44.84	0	2189313..2190563	-	416	91774018	pylS	Mbur_2086	-	pyrolysyl-tRNA synthetase
1937	 46.09	0	2191079..2192575	+	498	91774019	-	Mbur_2087	-	L-threonine O-3-phosphate decarboxylase
1938	 44.88	0	2192647..2193261	+	204	91774020	-	Mbur_2088	-	putative nucleotidyltransferase
1939	 46.69	+1	2193426..2194922	+	498	91774021	-	Mbur_2089	-	L-threonine O-3-phosphate decarboxylase
1940	 41.87	0	2194919..2195914	+	331	91774022	-	Mbur_2090	-	adenosylcobinamide-phosphate synthase
1941	 42.86	0	2195937..2196524	+	195	91774023	-	Mbur_2091	-	hypothetical protein
1942	 43.75	0	2196521..2197336	+	271	91774024	-	Mbur_2092	-	cobalamin-5'-phosphate synthase
1943	 43.23	0	2197336..2197941	+	201	91774025	-	Mbur_2093	-	putative nucleotidyltransferase
1944	 38.17	0	2197957..2198328	+	123	91774026	-	Mbur_2094	-	hypothetical protein
1945	 43.85	0	2198510..2199241	+	243	91774027	-	Mbur_2095	-	KaiC
1946	 42.07	0	2199311..2199997	-	228	91774028	-	Mbur_2096	-	hypothetical protein
1947	 41.60	0	2200106..2200480	+	124	91774029	-	Mbur_2097	-	transcriptional regulator TrmB
1948	 27.56	-2	2200723..2201103	-	126	91774030	-	Mbur_2098	-	hypothetical protein
1949	 47.28	+1	2201600..2202775	-	391	91774031	-	Mbur_2099	-	aminotransferase
1950	 43.90	0	2202824..2203315	-	163	91774032	-	Mbur_2100	-	AsnC family transcriptional regulator
1951	 46.30	0	2203359..2203736	-	125	91774033	-	Mbur_2101	-	30S ribosomal protein S8e
1952	 45.42	0	2203919..2204836	+	305	91774034	-	Mbur_2102	-	ribonuclease Z
1953	 38.26	0	2204909..2205619	+	236	91774035	-	Mbur_2103	-	hypothetical protein
1954	 37.11	-1	2205679..2207160	+	493	91774036	-	Mbur_2104	-	transposase
1955	 40.74	0	2207410..2207679	-	89	91774037	-	Mbur_2105	-	hypothetical protein
1956	 42.92	0	2207720..2208835	-	371	91774038	-	Mbur_2106	-	AAA ATPase
1957	 41.13	0	2209185..2209556	+	123	91774039	-	Mbur_2107	-	response regulator receiver protein
1958	 43.20	0	2209577..2211055	+	492	91774040	-	Mbur_2108	-	multisensor signal transduction histidine kinase
1959	 46.59	+1	2211203..2211979	+	258	91774041	-	Mbur_2109	-	ribulose-1,5-biphosphate synthetase
1960	 41.95	0	2212335..2212682	-	115	91774042	-	Mbur_2110	-	hypothetical protein
1961	 46.42	+1	2212804..2213613	-	269	91774043	-	Mbur_2111	-	pyrroline-5-carboxylate reductase
1962	 43.64	0	2213693..2214187	-	164	91774044	-	Mbur_2112	-	XRE family transcriptional regulator
1963	 46.45	+1	2214269..2215549	+	426	91774045	-	Mbur_2113	-	proteasome-activating nucleotidase
1964	 47.81	+1	2216140..2217486	-	448	91774046	-	Mbur_2115	-	phosphoglucosamine mutase
1965	 47.30	+1	2217577..2217891	+	104	91774047	-	Mbur_2116	-	signal recognition particle protein Srp19
1966	 44.07	0	2218040..2218216	-	58	91774048	-	Mbur_2117	-	preprotein translocase subunit SecG
1967	 45.69	0	2218259..2219278	-	339	91774049	-	Mbur_2118	-	translation initiation factor IF-2B subunit alpha
1968	 36.31	-1	2219343..2221091	-	582	91774050	-	Mbur_2119	-	multisensor signal transduction histidine kinase
1969	 34.55	-1	2221351..2223399	-	682	91774051	-	Mbur_2120	-	multisensor signal transduction histidine kinase
1970	 44.62	0	2223638..2225488	+	616	91774052	-	Mbur_2121	-	metal-dependent phosphohydrolase
1971	 44.89	0	2225485..2226237	+	250	91774053	-	Mbur_2122	-	putative methyltransferase
1972	 44.54	0	2226243..2226920	-	225	91774054	radB	Mbur_2123	-	DNA repair and recombination protein RadB
1973	 37.30	-1	2227350..2227601	+	83	91774055	-	Mbur_2124	-	glutaredoxin-like protein
1974	 46.02	0	2227615..2230002	+	795	91774056	-	Mbur_2125	-	ribonucleoside-triphosphate reductase, anaerobic
1975	 42.75	0	2230025..2230810	+	261	91774057	-	Mbur_2126	-	ribonucleoside-triphosphate reductase, anaerobic-like protein
1976	 39.91	0	2230877..2231728	+	283	91774058	-	Mbur_2127	-	hypothetical protein
1977	 44.98	0	2231778..2232773	+	331	91774059	-	Mbur_2128	-	thiamine-monophosphate kinase
1978	 41.63	0	2232800..2236714	+	1304	91774060	-	Mbur_2129	-	S-layer-like domain-containing protein
1979	 45.04	0	2236853..2237356	-	167	91774061	-	Mbur_2130	-	XRE family transcriptional regulator
1980	 47.29	+1	2237566..2238525	+	319	91774062	-	Mbur_2131	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1981	 44.74	0	2238602..2239390	+	262	91774063	-	Mbur_2132	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
1982	 45.59	0	2239390..2240148	+	252	91774064	-	Mbur_2133	-	ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit
1983	 38.70	0	2240163..2240609	-	148	91774065	-	Mbur_2134	-	hypothetical protein
1984	 37.79	0	2243628..2244569	-	313	91774066	-	Mbur_2137	-	transposase, IS4
1985	 42.70	0	2245184..2245888	-	234	91774067	-	Mbur_2139	-	hypothetical protein
1986	 44.46	0	2245911..2247725	-	604	91774068	-	Mbur_2140	-	ribonucleoside-triphosphate reductase, anaerobic
1987	 44.68	0	2247896..2248732	-	278	91774069	-	Mbur_2141	-	ATP-binding protein involved in chromosome partitioning
1988	 44.75	0	2248769..2249092	-	107	91774070	-	Mbur_2142	-	hypothetical protein
1989	 42.95	0	2249293..2250405	+	370	91774071	cdc6	Mbur_2143	-	cell division control protein 6
1990	 44.05	0	2250412..2250999	+	195	91774072	-	Mbur_2144	-	molybdenum-pterin binding domain-containing protein
1991	 44.71	0	2251030..2251785	+	251	91774073	-	Mbur_2145	-	exodeoxyribonuclease III
1992	 49.11	+1	2251929..2253557	-	542	91774074	-	Mbur_2146	-	thermosome, chaperonin Cpn60/TCP-1
1993	 43.10	0	2253863..2254036	-	57	91774075	-	Mbur_2147	-	hypothetical protein
1994	 43.15	0	2254304..2255566	+	420	91774076	-	Mbur_2148	-	hypothetical protein
1995	 48.07	+1	2255559..2257376	+	605	91774077	-	Mbur_2149	-	ATPase
1996	 45.03	0	2257703..2257873	+	56	91774078	-	Mbur_2150	-	hypothetical protein
1997	 47.29	+1	2257924..2258697	-	257	91774079	-	Mbur_2151	-	xylose isomerase-like TIM barrel
1998	 45.58	0	2258707..2259147	-	146	91774080	-	Mbur_2152	-	hypothetical protein
1999	 43.60	0	2259144..2259659	-	171	91774081	-	Mbur_2153	-	hypothetical protein
2000	 45.25	0	2259819..2260775	+	318	91774082	-	Mbur_2154	-	dihydrouridine synthase, DuS
2001	 48.25	+1	2261114..2261656	+	180	91774083	-	Mbur_2155	-	pyruvate ferredoxin oxidoreductase subunit gamma
2002	 45.21	0	2261660..2261920	+	86	91774084	-	Mbur_2156	-	pyruvate ferredoxin oxidoreductase, delta subunit
2003	 46.01	0	2261921..2263135	+	404	91774085	-	Mbur_2157	-	pyruvate ferredoxin oxidoreductase, alpha subunit
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.