IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1826	 38.57	0	2068654..2069283	-	209	91773908	-	Mbur_1970	-	hypothetical protein
1827	 42.90	0	2069343..2069666	-	107	91773909	-	Mbur_1971	-	hypothetical protein
1828	 49.72	+1	2070940..2072190	+	416	91773910	-	Mbur_1973	-	glutamate dehydrogenase (NAD/NADP)
1829	 42.11	0	2072373..2073101	+	242	91773911	-	Mbur_1974	-	reduced coenzyme F420:NADP oxidoreductase
1830	 43.79	0	2073396..2074724	+	442	91773912	-	Mbur_1975	-	L-glutamine synthetase
1831	 41.25	0	2074844..2078947	+	1367	91773913	-	Mbur_1976	-	hypothetical protein
1832	 45.39	0	2079008..2079571	+	187	91773914	-	Mbur_1977	-	hypothetical protein
1833	 44.80	0	2079572..2079850	-	92	91773915	-	Mbur_1978	-	hypothetical protein
1834	 45.11	0	2079854..2080855	-	333	91773916	-	Mbur_1979	-	phosphoribosylaminoimidazole synthetase
1835	 45.39	0	2080869..2082278	-	469	91773917	-	Mbur_1980	-	aspartate kinase
1836	 39.41	0	2082394..2083611	-	405	91773918	-	Mbur_1981	-	hypothetical protein
1837	 48.01	+1	2083728..2084933	+	401	91773919	-	Mbur_1982	-	cofactor-independent phosphoglycerate mutase
1838	 41.99	0	2085042..2085503	+	153	91773920	-	Mbur_1983	-	heat shock protein Hsp20
1839	 47.62	+1	2085683..2086438	+	251	91773921	-	Mbur_1984	-	F420-0--gamma-glutamyl ligase
1840	 47.59	+1	2086429..2086884	-	151	91773922	-	Mbur_1985	-	CMP/dCMP deaminase, zinc-binding
1841	 46.84	+1	2086990..2087892	+	300	91773923	-	Mbur_1986	-	preprotein translocase subunit SecF
1842	 46.08	0	2087889..2089583	+	564	91773924	secD	Mbur_1987	-	preprotein translocase subunit SecD
1843	 44.35	0	2089605..2090630	+	341	91773925	-	Mbur_1988	-	replication factor C small subunit 2
1844	 46.21	0	2090646..2092292	+	548	91773926	-	Mbur_1989	-	ELP3 family histone acetyltransferase
1845	 44.83	0	2092443..2092790	+	115	91773927	-	Mbur_1990	-	hypothetical protein
1846	 37.58	0	2092984..2093925	+	313	91773928	-	Mbur_1991	-	transposase, IS4
1847	 42.76	0	2094097..2094849	+	250	91773929	-	Mbur_1992	-	ATPases involved in chromosome partitioning-like protein
1848	 38.45	0	2094894..2095694	-	266	91773930	-	Mbur_1993	-	hypothetical protein
1849	 48.87	+1	2095822..2097012	+	396	91773931	-	Mbur_1994	-	bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase
1850	 47.30	+1	2097055..2097720	+	221	91773932	-	Mbur_1995	-	triosephosphate isomerase
1851	 40.20	0	2097782..2098174	-	130	91773933	-	Mbur_1996	-	hypothetical protein
1852	 45.13	0	2098171..2099484	-	437	91773934	-	Mbur_1997	-	prephenate dehydrogenase
1853	 47.04	+1	2099481..2100290	-	269	91773935	-	Mbur_1998	-	shikimate dehydrogenase
1854	 46.72	+1	2100287..2100988	-	233	91773936	-	Mbur_1999	-	3-dehydroquinate dehydratase
1855	 49.18	+1	2100992..2102146	-	384	91773937	-	Mbur_2000	-	3-dehydroquinate synthase
1856	 46.74	+1	2102156..2103013	-	285	91773938	-	Mbur_2001	-	fructose-bisphosphate aldolase
1857	 45.96	0	2103128..2103697	+	189	91773939	-	Mbur_2002	-	GMP synthase subunit A
1858	 43.12	0	2103960..2105348	+	462	91773940	-	Mbur_2003	-	Ig-like protein
1859	 34.66	-1	2107476..2109206	+	576	91773941	-	Mbur_2004	-	RNA-directed DNA polymerase
1860	 43.65	0	2109858..2111165	-	435	91773942	-	Mbur_2006	-	hypothetical protein
1861	 35.03	-1	2111374..2112495	-	373	91773943	-	Mbur_2007	-	transposase, IS4
1862	 45.32	0	2112713..2113588	+	291	91773944	-	Mbur_2008	-	hypothetical protein
1863	 40.07	0	2113590..2114405	+	271	91773945	-	Mbur_2009	-	abortive infection protein
1864	 40.87	0	2114835..2115086	-	83	91773946	-	Mbur_2010	-	hypothetical protein
1865	 46.18	0	2115198..2117018	-	606	91773947	-	Mbur_2011	-	hypothetical protein
1866	 42.13	0	2117647..2118396	-	249	91773948	-	Mbur_2013	-	hypothetical protein
1867	 43.12	0	2118383..2119414	-	343	91773949	-	Mbur_2014	-	hypothetical protein
1868	 51.73	+2	2119564..2120460	-	298	91773950	-	Mbur_2015	-	endonuclease IV
1869	 41.91	0	2120522..2121640	+	372	91773951	-	Mbur_2016	-	transposase
1870	 49.43	+1	2121665..2122012	-	115	91773952	-	Mbur_2017	-	hypothetical protein
1871	 43.96	0	2122437..2123612	+	391	91773953	-	Mbur_2018	-	glycosyl transferase family protein
1872	 37.79	0	2123689..2124630	-	313	91773954	-	Mbur_2019	-	transposase, IS4
1873	 45.67	0	2124758..2125219	+	153	91773955	-	Mbur_2020	-	dolichyl-phosphate beta-D-mannosyltransferase
1874	 32.66	-2	2125310..2126353	+	347	91773956	-	Mbur_2021	-	hypothetical protein
1875	 36.50	-1	2126380..2127453	+	357	91773957	-	Mbur_2022	-	UDP-N-acetylglucosamine 2-epimerase
1876	 29.68	-2	2127434..2128639	+	401	91773958	-	Mbur_2023	-	glycosyl transferase, group 1
1877	 32.39	-2	2128652..2129605	+	317	91773959	-	Mbur_2024	-	NAD-dependent epimerase/dehydratase
1878	 26.01	-2	2129886..2131427	+	513	91773960	-	Mbur_2026	-	hypothetical protein
1879	 30.84	-2	2131522..2132604	+	360	91773961	-	Mbur_2027	-	glycosyl transferase, group 1
1880	 33.88	-1	2132626..2133897	-	423	91773962	-	Mbur_2028	-	polysaccharide biosynthesis protein
1881	 51.02	+2	2133950..2135368	-	472	91773963	-	Mbur_2029	-	UDP-glucose/GDP-mannose dehydrogenase
1882	 45.34	0	2135428..2136360	-	310	91773964	-	Mbur_2030	-	oxidoreductase-like protein
1883	 46.34	0	2136798..2137289	-	163	91773965	-	Mbur_2031	-	phosphopantetheine adenylyltransferase
1884	 43.83	0	2137584..2138126	-	180	91773966	-	Mbur_2032	-	membrane-bound metal-dependent hydrolase
1885	 51.12	+2	2138696..2139673	+	325	91773967	radA	Mbur_2033	-	DNA repair and recombination protein RadA
1886	 46.99	+1	2139711..2140391	+	226	91773968	-	Mbur_2034	-	phosphoglycolate phosphatase
1887	 42.49	0	2140406..2140678	-	90	91773969	-	Mbur_2035	-	PRC-barrel protein
1888	 47.32	+1	2140709..2142925	-	738	91773970	-	Mbur_2036	-	AAA family ATPase, CDC48 subfamily protein
1889	 42.33	0	2143433..2144332	-	299	91773971	-	Mbur_2037	-	NAD-dependent epimerase/dehydratase
1890	 32.14	-2	2144877..2145461	+	194	91773972	-	Mbur_2038	-	hypothetical protein
1891	 34.51	-1	2146770..2148548	+	592	91773973	-	Mbur_2039	-	RNA-directed DNA polymerase
1892	 35.14	-1	2148794..2149015	+	73	91773974	-	Mbur_2040	-	hypothetical protein
1893	 42.08	0	2149692..2150114	-	140	91773975	-	Mbur_2041	-	CopG family transcriptional regulator
1894	 43.10	0	2150288..2151004	+	238	91773976	-	Mbur_2042	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1895	 45.28	0	2151005..2152435	+	476	91773977	-	Mbur_2043	-	amine oxidase
1896	 42.36	0	2152436..2153122	-	228	91773978	-	Mbur_2044	-	hypothetical protein
1897	 45.24	0	2153122..2154162	-	346	91773979	-	Mbur_2045	-	phosphate transporter
1898	 46.73	+1	2154219..2155166	-	315	91773980	-	Mbur_2046	-	tetratricopeptide protein
1899	 47.75	+1	2155210..2156430	-	406	91773981	-	Mbur_2047	-	hypothetical protein
1900	 45.28	0	2156427..2156786	-	119	91773982	-	Mbur_2048	-	hypothetical protein
1901	 43.37	0	2156988..2157296	-	102	91773983	-	Mbur_2049	-	translation initiation factor Sui1
1902	 41.81	0	2157398..2157751	+	117	91773984	-	Mbur_2050	-	hypothetical protein
1903	 48.88	+1	2157834..2159981	+	715	91773985	-	Mbur_2051	-	phosphoribosylformylglycinamidine synthase II
1904	 39.61	0	2160498..2160704	+	68	91773986	-	Mbur_2052	-	hypothetical protein
1905	 36.78	-1	2160998..2161345	-	115	91773987	-	Mbur_2053	-	hypothetical protein
1906	 36.78	-1	2161342..2161689	-	115	91773988	-	Mbur_2054	-	voltage-dependent potassium channel
1907	 41.73	0	2161723..2162091	-	122	91773989	-	Mbur_2055	-	hypothetical protein
1908	 35.40	-1	2162088..2162426	-	112	91773990	-	Mbur_2056	-	hypothetical protein
1909	 34.43	-1	2162434..2162982	-	182	91773991	-	Mbur_2057	-	hypothetical protein
1910	 34.70	-1	2163020..2163895	-	291	91773992	-	Mbur_2058	-	ABC transporter, ATPase subunit
1911	 30.40	-2	2163952..2164701	-	249	91773993	-	Mbur_2059	-	hypothetical protein
1912	 33.33	-1	2164708..2165076	-	122	91773994	-	Mbur_2060	-	hypothetical protein
1913	 41.44	0	2165139..2165582	-	147	91773995	-	Mbur_2061	-	hypothetical protein
1914	 39.88	0	2166194..2167171	-	325	91773996	-	Mbur_2062	-	cytochrome c biogenesis protein
1915	 32.65	-2	2167168..2168343	-	391	91773997	-	Mbur_2063	-	hypothetical protein
1916	 40.13	0	2168677..2169309	-	210	91773998	-	Mbur_2064	-	hypothetical protein
1917	 40.65	0	2170153..2170890	+	245	91773999	-	Mbur_2065	-	UbiA prenyltransferase
1918	 39.21	0	2170876..2171556	-	226	91774000	-	Mbur_2066	-	AsnC family transcriptional regulator
1919	 46.56	+1	2172567..2173745	-	392	91774001	-	Mbur_2068	-	aminotransferase, class V
1920	 46.29	0	2174110..2175390	+	426	91774002	-	Mbur_2069	-	hypothetical protein
1921	 44.81	0	2175395..2176039	+	214	91774003	-	Mbur_2070	-	TfuA-like protein
1922	 43.15	0	2176042..2176479	-	145	91774004	-	Mbur_2071	-	iron dependent repressor
1923	 44.68	0	2176538..2177383	-	281	91774005	-	Mbur_2072	-	NUDIX hydrolase
1924	 44.04	0	2177449..2178756	-	435	91774006	-	Mbur_2073	-	hypothetical protein
1925	 40.94	0	2180605..2180985	-	126	91774007	-	Mbur_2075	-	dinitrogenase iron-molybdenum cofactor biosynthesis
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.