IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1801	 44.52	0	2041501..2041965	+	154	91773883	nusG	Mbur_1944	-	transcription antitermination protein NusG
1802	 45.06	0	2042043..2042528	+	161	91773884	rpl11p	Mbur_1945	-	50S ribosomal protein L11P
1803	 42.99	0	2042778..2043419	+	213	91773885	rpl1P	Mbur_1946	-	50S ribosomal protein L1P
1804	 44.08	0	2043419..2044432	+	337	91773886	rplP0	Mbur_1947	-	acidic ribosomal protein P0
1805	 49.83	+1	2044477..2044779	+	100	91773887	rpl12p	Mbur_1948	-	50S ribosomal protein L12P
1806	 37.63	0	2044929..2045951	-	340	91773888	-	Mbur_1949	-	hypothetical protein
1807	 47.48	+1	2045995..2047563	-	522	91773889	-	Mbur_1950	-	DEAD/DEAH box helicase-like protein
1808	 40.67	0	2048091..2049071	+	326	91773890	-	Mbur_1951	-	radical SAM family Fe-S protein
1809	 45.28	0	2049253..2051169	+	638	91773891	-	Mbur_1952	-	Na+/solute symporter
1810	 38.50	0	2051263..2052210	+	315	91773892	-	Mbur_1953	-	hypothetical protein
1811	 42.70	0	2052214..2052960	-	248	91773893	-	Mbur_1954	-	beta-lactamase-like protein
1812	 44.70	0	2052967..2054259	-	430	91773894	-	Mbur_1955	-	AAA ATPase
1813	 40.43	0	2054390..2054953	-	187	91773895	-	Mbur_1956	-	hypothetical protein
1814	 45.95	0	2055041..2055460	+	139	91773896	-	Mbur_1957	-	SSU ribosomal protein S18P alanine acetyltransferase
1815	 47.14	+1	2056161..2057348	-	395	91773897	-	Mbur_1959	-	translation-associated GTPase
1816	 48.57	+1	2058096..2059598	+	500	91773898	-	Mbur_1960	-	thermosome subunit, group II chaperonin
1817	 43.44	0	2059746..2060309	+	187	91773899	-	Mbur_1961	-	BioY protein
1818	 46.05	0	2060326..2061135	+	269	91773900	-	Mbur_1962	-	ABC transporter, ATPase subunit
1819	 45.72	0	2061132..2061938	+	268	91773901	-	Mbur_1963	-	ABC transporter, ATPase subunit
1820	 45.18	0	2061943..2062710	+	255	91773902	-	Mbur_1964	-	cobalt ABC transporter, inner membrane subunit
1821	 45.73	0	2062723..2063085	+	120	91773903	-	Mbur_1965	-	ArsR family transcriptional regulator
1822	 44.68	0	2063082..2064218	+	378	91773904	-	Mbur_1966	-	hypothetical protein
1823	 44.32	0	2064775..2066694	+	639	91773905	-	Mbur_1967	-	hydantoinase/oxoprolinase
1824	 41.80	0	2067082..2067270	-	62	91773906	-	Mbur_1968	-	hypothetical protein
1825	 45.88	0	2067447..2068586	+	379	91773907	-	Mbur_1969	-	fructose-bisphosphate aldolase
1826	 38.57	0	2068654..2069283	-	209	91773908	-	Mbur_1970	-	hypothetical protein
1827	 42.90	0	2069343..2069666	-	107	91773909	-	Mbur_1971	-	hypothetical protein
1828	 49.72	+1	2070940..2072190	+	416	91773910	-	Mbur_1973	-	glutamate dehydrogenase (NAD/NADP)
1829	 42.11	0	2072373..2073101	+	242	91773911	-	Mbur_1974	-	reduced coenzyme F420:NADP oxidoreductase
1830	 43.79	0	2073396..2074724	+	442	91773912	-	Mbur_1975	-	L-glutamine synthetase
1831	 41.25	0	2074844..2078947	+	1367	91773913	-	Mbur_1976	-	hypothetical protein
1832	 45.39	0	2079008..2079571	+	187	91773914	-	Mbur_1977	-	hypothetical protein
1833	 44.80	0	2079572..2079850	-	92	91773915	-	Mbur_1978	-	hypothetical protein
1834	 45.11	0	2079854..2080855	-	333	91773916	-	Mbur_1979	-	phosphoribosylaminoimidazole synthetase
1835	 45.39	0	2080869..2082278	-	469	91773917	-	Mbur_1980	-	aspartate kinase
1836	 39.41	0	2082394..2083611	-	405	91773918	-	Mbur_1981	-	hypothetical protein
1837	 48.01	+1	2083728..2084933	+	401	91773919	-	Mbur_1982	-	cofactor-independent phosphoglycerate mutase
1838	 41.99	0	2085042..2085503	+	153	91773920	-	Mbur_1983	-	heat shock protein Hsp20
1839	 47.62	+1	2085683..2086438	+	251	91773921	-	Mbur_1984	-	F420-0--gamma-glutamyl ligase
1840	 47.59	+1	2086429..2086884	-	151	91773922	-	Mbur_1985	-	CMP/dCMP deaminase, zinc-binding
1841	 46.84	+1	2086990..2087892	+	300	91773923	-	Mbur_1986	-	preprotein translocase subunit SecF
1842	 46.08	0	2087889..2089583	+	564	91773924	secD	Mbur_1987	-	preprotein translocase subunit SecD
1843	 44.35	0	2089605..2090630	+	341	91773925	-	Mbur_1988	-	replication factor C small subunit 2
1844	 46.21	0	2090646..2092292	+	548	91773926	-	Mbur_1989	-	ELP3 family histone acetyltransferase
1845	 44.83	0	2092443..2092790	+	115	91773927	-	Mbur_1990	-	hypothetical protein
1846	 37.58	0	2092984..2093925	+	313	91773928	-	Mbur_1991	-	transposase, IS4
1847	 42.76	0	2094097..2094849	+	250	91773929	-	Mbur_1992	-	ATPases involved in chromosome partitioning-like protein
1848	 38.45	0	2094894..2095694	-	266	91773930	-	Mbur_1993	-	hypothetical protein
1849	 48.87	+1	2095822..2097012	+	396	91773931	-	Mbur_1994	-	bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase
1850	 47.30	+1	2097055..2097720	+	221	91773932	-	Mbur_1995	-	triosephosphate isomerase
1851	 40.20	0	2097782..2098174	-	130	91773933	-	Mbur_1996	-	hypothetical protein
1852	 45.13	0	2098171..2099484	-	437	91773934	-	Mbur_1997	-	prephenate dehydrogenase
1853	 47.04	+1	2099481..2100290	-	269	91773935	-	Mbur_1998	-	shikimate dehydrogenase
1854	 46.72	+1	2100287..2100988	-	233	91773936	-	Mbur_1999	-	3-dehydroquinate dehydratase
1855	 49.18	+1	2100992..2102146	-	384	91773937	-	Mbur_2000	-	3-dehydroquinate synthase
1856	 46.74	+1	2102156..2103013	-	285	91773938	-	Mbur_2001	-	fructose-bisphosphate aldolase
1857	 45.96	0	2103128..2103697	+	189	91773939	-	Mbur_2002	-	GMP synthase subunit A
1858	 43.12	0	2103960..2105348	+	462	91773940	-	Mbur_2003	-	Ig-like protein
1859	 34.66	-1	2107476..2109206	+	576	91773941	-	Mbur_2004	-	RNA-directed DNA polymerase
1860	 43.65	0	2109858..2111165	-	435	91773942	-	Mbur_2006	-	hypothetical protein
1861	 35.03	-1	2111374..2112495	-	373	91773943	-	Mbur_2007	-	transposase, IS4
1862	 45.32	0	2112713..2113588	+	291	91773944	-	Mbur_2008	-	hypothetical protein
1863	 40.07	0	2113590..2114405	+	271	91773945	-	Mbur_2009	-	abortive infection protein
1864	 40.87	0	2114835..2115086	-	83	91773946	-	Mbur_2010	-	hypothetical protein
1865	 46.18	0	2115198..2117018	-	606	91773947	-	Mbur_2011	-	hypothetical protein
1866	 42.13	0	2117647..2118396	-	249	91773948	-	Mbur_2013	-	hypothetical protein
1867	 43.12	0	2118383..2119414	-	343	91773949	-	Mbur_2014	-	hypothetical protein
1868	 51.73	+2	2119564..2120460	-	298	91773950	-	Mbur_2015	-	endonuclease IV
1869	 41.91	0	2120522..2121640	+	372	91773951	-	Mbur_2016	-	transposase
1870	 49.43	+1	2121665..2122012	-	115	91773952	-	Mbur_2017	-	hypothetical protein
1871	 43.96	0	2122437..2123612	+	391	91773953	-	Mbur_2018	-	glycosyl transferase family protein
1872	 37.79	0	2123689..2124630	-	313	91773954	-	Mbur_2019	-	transposase, IS4
1873	 45.67	0	2124758..2125219	+	153	91773955	-	Mbur_2020	-	dolichyl-phosphate beta-D-mannosyltransferase
1874	 32.66	-2	2125310..2126353	+	347	91773956	-	Mbur_2021	-	hypothetical protein
1875	 36.50	-1	2126380..2127453	+	357	91773957	-	Mbur_2022	-	UDP-N-acetylglucosamine 2-epimerase
1876	 29.68	-2	2127434..2128639	+	401	91773958	-	Mbur_2023	-	glycosyl transferase, group 1
1877	 32.39	-2	2128652..2129605	+	317	91773959	-	Mbur_2024	-	NAD-dependent epimerase/dehydratase
1878	 26.01	-2	2129886..2131427	+	513	91773960	-	Mbur_2026	-	hypothetical protein
1879	 30.84	-2	2131522..2132604	+	360	91773961	-	Mbur_2027	-	glycosyl transferase, group 1
1880	 33.88	-1	2132626..2133897	-	423	91773962	-	Mbur_2028	-	polysaccharide biosynthesis protein
1881	 51.02	+2	2133950..2135368	-	472	91773963	-	Mbur_2029	-	UDP-glucose/GDP-mannose dehydrogenase
1882	 45.34	0	2135428..2136360	-	310	91773964	-	Mbur_2030	-	oxidoreductase-like protein
1883	 46.34	0	2136798..2137289	-	163	91773965	-	Mbur_2031	-	phosphopantetheine adenylyltransferase
1884	 43.83	0	2137584..2138126	-	180	91773966	-	Mbur_2032	-	membrane-bound metal-dependent hydrolase
1885	 51.12	+2	2138696..2139673	+	325	91773967	radA	Mbur_2033	-	DNA repair and recombination protein RadA
1886	 46.99	+1	2139711..2140391	+	226	91773968	-	Mbur_2034	-	phosphoglycolate phosphatase
1887	 42.49	0	2140406..2140678	-	90	91773969	-	Mbur_2035	-	PRC-barrel protein
1888	 47.32	+1	2140709..2142925	-	738	91773970	-	Mbur_2036	-	AAA family ATPase, CDC48 subfamily protein
1889	 42.33	0	2143433..2144332	-	299	91773971	-	Mbur_2037	-	NAD-dependent epimerase/dehydratase
1890	 32.14	-2	2144877..2145461	+	194	91773972	-	Mbur_2038	-	hypothetical protein
1891	 34.51	-1	2146770..2148548	+	592	91773973	-	Mbur_2039	-	RNA-directed DNA polymerase
1892	 35.14	-1	2148794..2149015	+	73	91773974	-	Mbur_2040	-	hypothetical protein
1893	 42.08	0	2149692..2150114	-	140	91773975	-	Mbur_2041	-	CopG family transcriptional regulator
1894	 43.10	0	2150288..2151004	+	238	91773976	-	Mbur_2042	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1895	 45.28	0	2151005..2152435	+	476	91773977	-	Mbur_2043	-	amine oxidase
1896	 42.36	0	2152436..2153122	-	228	91773978	-	Mbur_2044	-	hypothetical protein
1897	 45.24	0	2153122..2154162	-	346	91773979	-	Mbur_2045	-	phosphate transporter
1898	 46.73	+1	2154219..2155166	-	315	91773980	-	Mbur_2046	-	tetratricopeptide protein
1899	 47.75	+1	2155210..2156430	-	406	91773981	-	Mbur_2047	-	hypothetical protein
1900	 45.28	0	2156427..2156786	-	119	91773982	-	Mbur_2048	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.