IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1745	 42.12	0	1981617..1982492	-	291	91773827	-	Mbur_1886	-	hypothetical protein
1746	 40.71	0	1982668..1983738	+	356	91773828	-	Mbur_1887	-	GTP-binding protein
1747	 47.08	+1	1983784..1984896	-	370	91773829	-	Mbur_1888	-	aminotransferase
1748	 42.04	0	1984909..1985517	-	202	91773830	-	Mbur_1889	-	hexulose-6-phosphate isomerase
1749	 41.13	0	1985536..1986048	-	170	91773831	-	Mbur_1890	-	hypothetical protein
1750	 42.78	0	1986066..1986425	-	119	91773832	-	Mbur_1891	-	hypothetical protein
1751	 45.51	0	1986431..1987054	-	207	91773833	-	Mbur_1892	-	small GTP-binding protein
1752	 46.57	+1	1988298..1988909	-	203	91773834	-	Mbur_1894	-	protein-L-isoaspartate O-methyltransferase
1753	 44.29	0	1988906..1989553	-	215	91773835	-	Mbur_1895	-	hypothetical protein
1754	 44.83	0	1989637..1990506	-	289	91773836	-	Mbur_1896	-	agmatinase
1755	 42.97	0	1990520..1990903	-	127	91773837	-	Mbur_1897	-	translation initiation factor IF-5A
1756	 43.25	0	1991077..1991772	-	231	91773838	-	Mbur_1898	-	peptidase M10A and M12B, matrixin and adamalysin
1757	 40.32	0	1991792..1993180	-	462	91773839	-	Mbur_1899	-	multisensor signal transduction histidine kinase
1758	 44.69	0	1993313..1994113	+	266	91773840	-	Mbur_1900	-	nuclease (SNase-like)
1759	 43.45	0	1994196..1994996	+	266	91773841	-	Mbur_1901	-	haloacid dehalogenase-like hydrolase
1760	 44.28	0	1995262..1996878	+	538	91773842	-	Mbur_1902	-	ABC transporter, fused ATPase subunits
1761	 44.44	0	1996908..1998473	+	521	91773843	-	Mbur_1903	-	hypothetical protein
1762	 45.06	0	1998473..1998907	+	144	91773844	-	Mbur_1904	-	hypothetical protein
1763	 45.39	0	1998917..1999372	+	151	91773845	-	Mbur_1905	-	hypothetical protein
1764	 49.64	+1	1999369..2000613	+	414	91773846	-	Mbur_1906	-	CoA enzyme activase
1765	 47.31	+1	2000619..2001212	+	197	91773847	-	Mbur_1907	-	hypothetical protein
1766	 46.09	0	2001212..2002144	+	310	91773848	-	Mbur_1908	-	hypothetical protein
1767	 44.67	0	2002173..2002622	+	149	91773849	-	Mbur_1909	-	alkylhydroperoxidase-like protein
1768	 42.78	0	2002724..2003623	-	299	91773850	-	Mbur_1910	-	hypothetical protein
1769	 40.12	0	2003797..2004120	+	107	91773851	-	Mbur_1911	-	hypothetical protein
1770	 38.41	0	2004272..2004586	+	104	91773852	-	Mbur_1912	-	hypothetical protein
1771	 44.35	0	2004608..2005624	+	338	91773853	-	Mbur_1913	-	flap endonuclease-1
1772	 46.44	+1	2005621..2007177	-	518	91773854	-	Mbur_1914	-	phosphoglyceromutase
1773	 44.66	0	2007304..2008548	-	414	91773855	-	Mbur_1915	-	hypothetical protein
1774	 43.39	0	2008545..2009846	-	433	91773856	-	Mbur_1916	-	hypothetical protein
1775	 42.51	0	2009848..2010708	-	286	91773857	-	Mbur_1917	-	ABC transporter, ATPase subunit
1776	 39.02	0	2010956..2011747	-	263	91773858	-	Mbur_1918	-	hypothetical protein
1777	 39.18	0	2011755..2012678	-	307	91773859	-	Mbur_1919	-	hypothetical protein
1778	 35.16	-1	2012959..2013726	+	255	91773860	-	Mbur_1920	-	hypothetical protein
1779	 30.83	-2	2014176..2016731	+	851	91773861	-	Mbur_1921	-	Toll-interleukin receptor
1780	 37.79	0	2017163..2018104	+	313	91773862	-	Mbur_1923	-	transposase, IS4
1781	 43.26	0	2018292..2019167	+	291	91773863	-	Mbur_1924	-	methyltransferase type 12
1782	 43.13	0	2019169..2020536	-	455	91773864	-	Mbur_1925	-	MATE efflux family protein
1783	 41.67	0	2020821..2021744	+	307	91773865	ubiA	Mbur_1926	-	prenyltransferase
1784	 36.51	-1	2021761..2022546	-	261	91773866	-	Mbur_1927	-	hypothetical protein
1785	 45.45	0	2022836..2024452	-	538	91773867	-	Mbur_1928	-	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
1786	 47.37	+1	2024528..2026429	-	633	91773868	-	Mbur_1929	-	hypothetical protein
1787	 38.58	0	2026481..2027299	-	272	91773869	-	Mbur_1930	-	hypothetical protein
1788	 44.26	0	2027422..2028162	+	246	91773870	-	Mbur_1931	-	XRE family transcriptional regulator
1789	 48.19	+1	2028219..2029268	+	349	91773871	-	Mbur_1932	-	hypothetical protein
1790	 50.47	+1	2029279..2030451	+	390	91773872	-	Mbur_1933	-	acetyl-CoA acetyltransferase
1791	 46.02	0	2030457..2030858	+	133	91773873	-	Mbur_1934	-	hypothetical protein
1792	 46.32	0	2030845..2031360	+	171	91773874	-	Mbur_1935	-	adenylate cyclase
1793	 45.89	0	2031398..2033452	-	684	91773875	metG	Mbur_1936	-	methionyl-tRNA synthetase
1794	 44.61	0	2033585..2034817	+	410	91773876	-	Mbur_1937	-	signal peptide peptidase A
1795	 46.07	0	2035601..2036566	-	321	91773877	-	Mbur_1938	-	translation initiation factor IF-2B subunit delta
1796	 42.08	0	2036779..2037018	+	79	91773878	-	Mbur_1939	-	hypothetical protein
1797	 45.20	0	2037083..2038447	+	454	91773879	-	Mbur_1940	-	aldehyde dehydrogenase
1798	 42.92	0	2038467..2039906	+	479	91773880	-	Mbur_1941	-	hypothetical protein
1799	 48.42	+1	2039998..2041104	+	368	91773881	-	Mbur_1942	-	cell division protein FtsZ
1800	 40.95	0	2041287..2041496	+	69	91773882	secE	Mbur_1943	-	preprotein translocase subunit SecE
1801	 44.52	0	2041501..2041965	+	154	91773883	nusG	Mbur_1944	-	transcription antitermination protein NusG
1802	 45.06	0	2042043..2042528	+	161	91773884	rpl11p	Mbur_1945	-	50S ribosomal protein L11P
1803	 42.99	0	2042778..2043419	+	213	91773885	rpl1P	Mbur_1946	-	50S ribosomal protein L1P
1804	 44.08	0	2043419..2044432	+	337	91773886	rplP0	Mbur_1947	-	acidic ribosomal protein P0
1805	 49.83	+1	2044477..2044779	+	100	91773887	rpl12p	Mbur_1948	-	50S ribosomal protein L12P
1806	 37.63	0	2044929..2045951	-	340	91773888	-	Mbur_1949	-	hypothetical protein
1807	 47.48	+1	2045995..2047563	-	522	91773889	-	Mbur_1950	-	DEAD/DEAH box helicase-like protein
1808	 40.67	0	2048091..2049071	+	326	91773890	-	Mbur_1951	-	radical SAM family Fe-S protein
1809	 45.28	0	2049253..2051169	+	638	91773891	-	Mbur_1952	-	Na+/solute symporter
1810	 38.50	0	2051263..2052210	+	315	91773892	-	Mbur_1953	-	hypothetical protein
1811	 42.70	0	2052214..2052960	-	248	91773893	-	Mbur_1954	-	beta-lactamase-like protein
1812	 44.70	0	2052967..2054259	-	430	91773894	-	Mbur_1955	-	AAA ATPase
1813	 40.43	0	2054390..2054953	-	187	91773895	-	Mbur_1956	-	hypothetical protein
1814	 45.95	0	2055041..2055460	+	139	91773896	-	Mbur_1957	-	SSU ribosomal protein S18P alanine acetyltransferase
1815	 47.14	+1	2056161..2057348	-	395	91773897	-	Mbur_1959	-	translation-associated GTPase
1816	 48.57	+1	2058096..2059598	+	500	91773898	-	Mbur_1960	-	thermosome subunit, group II chaperonin
1817	 43.44	0	2059746..2060309	+	187	91773899	-	Mbur_1961	-	BioY protein
1818	 46.05	0	2060326..2061135	+	269	91773900	-	Mbur_1962	-	ABC transporter, ATPase subunit
1819	 45.72	0	2061132..2061938	+	268	91773901	-	Mbur_1963	-	ABC transporter, ATPase subunit
1820	 45.18	0	2061943..2062710	+	255	91773902	-	Mbur_1964	-	cobalt ABC transporter, inner membrane subunit
1821	 45.73	0	2062723..2063085	+	120	91773903	-	Mbur_1965	-	ArsR family transcriptional regulator
1822	 44.68	0	2063082..2064218	+	378	91773904	-	Mbur_1966	-	hypothetical protein
1823	 44.32	0	2064775..2066694	+	639	91773905	-	Mbur_1967	-	hydantoinase/oxoprolinase
1824	 41.80	0	2067082..2067270	-	62	91773906	-	Mbur_1968	-	hypothetical protein
1825	 45.88	0	2067447..2068586	+	379	91773907	-	Mbur_1969	-	fructose-bisphosphate aldolase
1826	 38.57	0	2068654..2069283	-	209	91773908	-	Mbur_1970	-	hypothetical protein
1827	 42.90	0	2069343..2069666	-	107	91773909	-	Mbur_1971	-	hypothetical protein
1828	 49.72	+1	2070940..2072190	+	416	91773910	-	Mbur_1973	-	glutamate dehydrogenase (NAD/NADP)
1829	 42.11	0	2072373..2073101	+	242	91773911	-	Mbur_1974	-	reduced coenzyme F420:NADP oxidoreductase
1830	 43.79	0	2073396..2074724	+	442	91773912	-	Mbur_1975	-	L-glutamine synthetase
1831	 41.25	0	2074844..2078947	+	1367	91773913	-	Mbur_1976	-	hypothetical protein
1832	 45.39	0	2079008..2079571	+	187	91773914	-	Mbur_1977	-	hypothetical protein
1833	 44.80	0	2079572..2079850	-	92	91773915	-	Mbur_1978	-	hypothetical protein
1834	 45.11	0	2079854..2080855	-	333	91773916	-	Mbur_1979	-	phosphoribosylaminoimidazole synthetase
1835	 45.39	0	2080869..2082278	-	469	91773917	-	Mbur_1980	-	aspartate kinase
1836	 39.41	0	2082394..2083611	-	405	91773918	-	Mbur_1981	-	hypothetical protein
1837	 48.01	+1	2083728..2084933	+	401	91773919	-	Mbur_1982	-	cofactor-independent phosphoglycerate mutase
1838	 41.99	0	2085042..2085503	+	153	91773920	-	Mbur_1983	-	heat shock protein Hsp20
1839	 47.62	+1	2085683..2086438	+	251	91773921	-	Mbur_1984	-	F420-0--gamma-glutamyl ligase
1840	 47.59	+1	2086429..2086884	-	151	91773922	-	Mbur_1985	-	CMP/dCMP deaminase, zinc-binding
1841	 46.84	+1	2086990..2087892	+	300	91773923	-	Mbur_1986	-	preprotein translocase subunit SecF
1842	 46.08	0	2087889..2089583	+	564	91773924	secD	Mbur_1987	-	preprotein translocase subunit SecD
1843	 44.35	0	2089605..2090630	+	341	91773925	-	Mbur_1988	-	replication factor C small subunit 2
1844	 46.21	0	2090646..2092292	+	548	91773926	-	Mbur_1989	-	ELP3 family histone acetyltransferase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.