IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1700	 39.27	0	1937996..1940857	-	953	91773782	-	Mbur_1841	-	HsdR family type I site-specific deoxyribonuclease
1701	 34.35	-1	1940886..1942061	-	391	91773783	-	Mbur_1842	-	restriction modification system DNA specificity subunit
1702	 43.00	0	1942089..1943753	-	554	91773784	-	Mbur_1843	-	type I restriction-modification system, M subunit
1703	 37.46	0	1943971..1944261	+	96	91773785	-	Mbur_1844	-	hypothetical protein
1704	 31.33	-2	1944258..1944506	+	82	91773786	-	Mbur_1845	-	hypothetical protein
1705	 41.57	0	1944903..1945691	+	262	91773787	-	Mbur_1846	-	hypothetical protein
1706	 48.70	+1	1945750..1946634	+	294	91773788	-	Mbur_1847	-	methylenetetrahydrofolate reductase
1707	 47.60	+1	1946666..1947913	+	415	91773789	-	Mbur_1848	-	thiamine biosynthesis protein ThiC
1708	 48.45	+1	1947918..1948691	+	257	91773790	-	Mbur_1849	-	coenzyme F420-0 gamma-glutamyl ligase
1709	 38.00	0	1948694..1949164	+	156	91773791	-	Mbur_1850	-	hypothetical protein
1710	 47.78	+1	1949237..1949506	+	89	91773792	-	Mbur_1851	-	thioredoxin-related
1711	 46.35	0	1949603..1950616	+	337	91773793	-	Mbur_1852	-	putative mRNA 3-end processing factor
1712	 45.38	0	1950703..1951092	+	129	91773794	-	Mbur_1853	-	hypothetical protein
1713	 45.54	0	1951167..1952936	+	589	91773795	-	Mbur_1854	-	putative ATPase RIL
1714	 43.99	0	1952964..1953254	-	96	91773796	-	Mbur_1855	-	hypothetical protein
1715	 39.27	0	1953320..1955122	-	600	91773797	-	Mbur_1856	-	hypothetical protein
1716	 46.59	+1	1955221..1956042	+	273	91773798	-	Mbur_1857	-	imidazole glycerol phosphate synthase subunit HisF
1717	 43.75	0	1956065..1956352	+	95	91773799	-	Mbur_1858	-	MazG nucleotide pyrophosphohydrolase
1718	 39.90	0	1956534..1957493	+	319	91773800	-	Mbur_1859	-	hypothetical protein
1719	 35.02	-1	1957493..1957729	+	78	91773801	-	Mbur_1860	-	hypothetical protein
1720	 47.88	+1	1957874..1960306	+	810	91773802	-	Mbur_1861	-	peptidase U32
1721	 48.24	+1	1960303..1960671	+	122	91773803	-	Mbur_1862	-	deoxynucleoside 5'-monophosphate N-glycosidase
1722	 40.65	0	1960762..1961007	+	81	91773804	-	Mbur_1863	-	hypothetical protein
1723	 44.59	0	1960981..1961646	-	221	91773805	-	Mbur_1864	-	hypothetical protein
1724	 47.95	+1	1961649..1963235	-	528	91773806	lysK	Mbur_1865	-	lysyl-tRNA synthetase
1725	 32.40	-2	1963467..1964426	-	319	91773807	-	Mbur_1866	-	hypothetical protein
1726	 46.29	0	1964506..1965555	-	349	91773808	-	Mbur_1867	-	Orn/DAP/Arg decarboxylase 2
1727	 47.59	+1	1965552..1966526	-	324	91773809	-	Mbur_1868	-	deoxyhypusine synthase
1728	 43.28	0	1966817..1967560	+	247	91773810	-	Mbur_1869	-	hypothetical protein
1729	 47.70	+1	1968052..1968594	+	180	91773811	-	Mbur_1870	-	pyruvoyl-dependent arginine decarboxylase
1730	 45.08	0	1968691..1969371	+	226	91773812	-	Mbur_1871	-	iron dependent repressor
1731	 45.98	0	1969352..1971328	+	658	91773813	-	Mbur_1872	-	ferrous iron transport protein B
1732	 42.01	0	1971406..1971624	+	72	91773814	-	Mbur_1873	-	hypothetical protein
1733	 42.32	0	1971634..1972434	-	266	91773815	-	Mbur_1874	-	hypothetical protein
1734	 38.10	0	1972436..1973149	-	237	91773816	-	Mbur_1875	-	DNA-3-methyladenine glycosylase III
1735	 43.27	0	1973180..1973662	-	160	91773817	-	Mbur_1876	-	hypothetical protein
1736	 47.47	+1	1973691..1974539	-	282	91773818	-	Mbur_1877	-	ribose-phosphate pyrophosphokinase
1737	 43.96	0	1974622..1975101	-	159	91773819	-	Mbur_1878	-	putative molybdenum cofactor biosynthesis protein C
1738	 41.80	0	1975119..1975307	-	62	91773820	-	Mbur_1879	-	hypothetical protein
1739	 46.33	0	1975313..1976758	-	481	91773821	-	Mbur_1880	-	YjeF-related protein
1740	 45.96	0	1976893..1978389	+	498	91773822	-	Mbur_1881	-	TrkA-N
1741	 42.90	0	1978414..1979124	+	236	91773823	-	Mbur_1882	-	hypothetical protein
1742	 47.40	+1	1979178..1980464	+	428	91773824	-	Mbur_1883	-	3-isopropylmalate dehydratase, large subunit
1743	 44.97	0	1980639..1981085	-	148	91773825	-	Mbur_1884	-	CBS domain-containing protein
1744	 41.00	0	1981310..1981609	+	99	91773826	-	Mbur_1885	-	phosphoribosyl-ATP pyrophosphatase
1745	 42.12	0	1981617..1982492	-	291	91773827	-	Mbur_1886	-	hypothetical protein
1746	 40.71	0	1982668..1983738	+	356	91773828	-	Mbur_1887	-	GTP-binding protein
1747	 47.08	+1	1983784..1984896	-	370	91773829	-	Mbur_1888	-	aminotransferase
1748	 42.04	0	1984909..1985517	-	202	91773830	-	Mbur_1889	-	hexulose-6-phosphate isomerase
1749	 41.13	0	1985536..1986048	-	170	91773831	-	Mbur_1890	-	hypothetical protein
1750	 42.78	0	1986066..1986425	-	119	91773832	-	Mbur_1891	-	hypothetical protein
1751	 45.51	0	1986431..1987054	-	207	91773833	-	Mbur_1892	-	small GTP-binding protein
1752	 46.57	+1	1988298..1988909	-	203	91773834	-	Mbur_1894	-	protein-L-isoaspartate O-methyltransferase
1753	 44.29	0	1988906..1989553	-	215	91773835	-	Mbur_1895	-	hypothetical protein
1754	 44.83	0	1989637..1990506	-	289	91773836	-	Mbur_1896	-	agmatinase
1755	 42.97	0	1990520..1990903	-	127	91773837	-	Mbur_1897	-	translation initiation factor IF-5A
1756	 43.25	0	1991077..1991772	-	231	91773838	-	Mbur_1898	-	peptidase M10A and M12B, matrixin and adamalysin
1757	 40.32	0	1991792..1993180	-	462	91773839	-	Mbur_1899	-	multisensor signal transduction histidine kinase
1758	 44.69	0	1993313..1994113	+	266	91773840	-	Mbur_1900	-	nuclease (SNase-like)
1759	 43.45	0	1994196..1994996	+	266	91773841	-	Mbur_1901	-	haloacid dehalogenase-like hydrolase
1760	 44.28	0	1995262..1996878	+	538	91773842	-	Mbur_1902	-	ABC transporter, fused ATPase subunits
1761	 44.44	0	1996908..1998473	+	521	91773843	-	Mbur_1903	-	hypothetical protein
1762	 45.06	0	1998473..1998907	+	144	91773844	-	Mbur_1904	-	hypothetical protein
1763	 45.39	0	1998917..1999372	+	151	91773845	-	Mbur_1905	-	hypothetical protein
1764	 49.64	+1	1999369..2000613	+	414	91773846	-	Mbur_1906	-	CoA enzyme activase
1765	 47.31	+1	2000619..2001212	+	197	91773847	-	Mbur_1907	-	hypothetical protein
1766	 46.09	0	2001212..2002144	+	310	91773848	-	Mbur_1908	-	hypothetical protein
1767	 44.67	0	2002173..2002622	+	149	91773849	-	Mbur_1909	-	alkylhydroperoxidase-like protein
1768	 42.78	0	2002724..2003623	-	299	91773850	-	Mbur_1910	-	hypothetical protein
1769	 40.12	0	2003797..2004120	+	107	91773851	-	Mbur_1911	-	hypothetical protein
1770	 38.41	0	2004272..2004586	+	104	91773852	-	Mbur_1912	-	hypothetical protein
1771	 44.35	0	2004608..2005624	+	338	91773853	-	Mbur_1913	-	flap endonuclease-1
1772	 46.44	+1	2005621..2007177	-	518	91773854	-	Mbur_1914	-	phosphoglyceromutase
1773	 44.66	0	2007304..2008548	-	414	91773855	-	Mbur_1915	-	hypothetical protein
1774	 43.39	0	2008545..2009846	-	433	91773856	-	Mbur_1916	-	hypothetical protein
1775	 42.51	0	2009848..2010708	-	286	91773857	-	Mbur_1917	-	ABC transporter, ATPase subunit
1776	 39.02	0	2010956..2011747	-	263	91773858	-	Mbur_1918	-	hypothetical protein
1777	 39.18	0	2011755..2012678	-	307	91773859	-	Mbur_1919	-	hypothetical protein
1778	 35.16	-1	2012959..2013726	+	255	91773860	-	Mbur_1920	-	hypothetical protein
1779	 30.83	-2	2014176..2016731	+	851	91773861	-	Mbur_1921	-	Toll-interleukin receptor
1780	 37.79	0	2017163..2018104	+	313	91773862	-	Mbur_1923	-	transposase, IS4
1781	 43.26	0	2018292..2019167	+	291	91773863	-	Mbur_1924	-	methyltransferase type 12
1782	 43.13	0	2019169..2020536	-	455	91773864	-	Mbur_1925	-	MATE efflux family protein
1783	 41.67	0	2020821..2021744	+	307	91773865	ubiA	Mbur_1926	-	prenyltransferase
1784	 36.51	-1	2021761..2022546	-	261	91773866	-	Mbur_1927	-	hypothetical protein
1785	 45.45	0	2022836..2024452	-	538	91773867	-	Mbur_1928	-	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
1786	 47.37	+1	2024528..2026429	-	633	91773868	-	Mbur_1929	-	hypothetical protein
1787	 38.58	0	2026481..2027299	-	272	91773869	-	Mbur_1930	-	hypothetical protein
1788	 44.26	0	2027422..2028162	+	246	91773870	-	Mbur_1931	-	XRE family transcriptional regulator
1789	 48.19	+1	2028219..2029268	+	349	91773871	-	Mbur_1932	-	hypothetical protein
1790	 50.47	+1	2029279..2030451	+	390	91773872	-	Mbur_1933	-	acetyl-CoA acetyltransferase
1791	 46.02	0	2030457..2030858	+	133	91773873	-	Mbur_1934	-	hypothetical protein
1792	 46.32	0	2030845..2031360	+	171	91773874	-	Mbur_1935	-	adenylate cyclase
1793	 45.89	0	2031398..2033452	-	684	91773875	metG	Mbur_1936	-	methionyl-tRNA synthetase
1794	 44.61	0	2033585..2034817	+	410	91773876	-	Mbur_1937	-	signal peptide peptidase A
1795	 46.07	0	2035601..2036566	-	321	91773877	-	Mbur_1938	-	translation initiation factor IF-2B subunit delta
1796	 42.08	0	2036779..2037018	+	79	91773878	-	Mbur_1939	-	hypothetical protein
1797	 45.20	0	2037083..2038447	+	454	91773879	-	Mbur_1940	-	aldehyde dehydrogenase
1798	 42.92	0	2038467..2039906	+	479	91773880	-	Mbur_1941	-	hypothetical protein
1799	 48.42	+1	2039998..2041104	+	368	91773881	-	Mbur_1942	-	cell division protein FtsZ
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.