IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1630	 43.14	0	1855141..1856262	-	373	91773712	-	Mbur_1764	-	replication factor A
1631	 44.39	0	1856497..1857147	+	216	91773713	-	Mbur_1765	-	RNA 2'-phosphotransferase-like protein
1632	 40.46	0	1857150..1858145	-	331	91773714	-	Mbur_1766	-	RNA 3'-terminal-phosphate cyclase
1633	 43.54	0	1858142..1859503	-	453	91773715	-	Mbur_1767	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1634	 37.78	0	1859996..1860310	+	104	91773716	-	Mbur_1768	-	hypothetical protein
1635	 44.47	0	1860519..1861946	+	475	91773717	-	Mbur_1769	-	DNA primase
1636	 38.70	0	1862426..1862947	-	173	91773718	-	Mbur_1771	-	SSU ribosomal protein S18P alanine acetyltransferase
1637	 45.45	0	1863041..1864888	-	615	91773719	-	Mbur_1772	-	tRNA-guanine transglycosylases, various specificities
1638	 49.49	+1	1864978..1866351	+	457	91773720	-	Mbur_1773	-	D-lactate dehydrogenase (cytochrome)
1639	 43.88	0	1866353..1867423	+	356	91773721	-	Mbur_1774	-	hypothetical protein
1640	 37.70	0	1867426..1868958	-	510	91773722	-	Mbur_1775	-	PAS/PAC sensor hybrid histidine kinase
1641	 45.64	0	1869018..1870886	-	622	91773723	-	Mbur_1776	-	hypothetical protein
1642	 46.38	0	1870898..1871533	-	211	91773724	-	Mbur_1777	-	beta-lactamase-like protein
1643	 41.61	0	1871554..1872399	-	281	91773725	-	Mbur_1778	-	TatD-related deoxyribonuclease
1644	 34.84	-1	1872502..1873758	+	418	91773726	-	Mbur_1779	-	hypothetical protein
1645	 33.75	-1	1873767..1874006	+	79	91773727	-	Mbur_1780	-	hypothetical protein
1646	 48.68	+1	1874153..1875481	-	442	91773728	-	Mbur_1781	-	2-isopropylmalate synthase
1647	 34.27	-1	1882591..1883334	+	247	91773729	-	Mbur_1782	-	UbiA prenyltransferase
1648	 40.06	0	1883321..1884748	+	475	91773730	-	Mbur_1783	-	dihydrolipoamide dehydrogenase
1649	 45.34	0	1885246..1886661	+	471	91773731	-	Mbur_1785	-	sodium/glutamate symporter
1650	 46.72	+1	1886812..1887162	-	116	91773732	nac	Mbur_1786	-	nascent polypeptide-associated complex protein
1651	 42.90	0	1887227..1887550	-	107	91773733	-	Mbur_1787	-	HesB/YadR/YfhF
1652	 40.44	0	1887646..1888827	-	393	91773734	-	Mbur_1788	-	hypothetical protein
1653	 41.70	0	1888870..1889634	-	254	91773735	-	Mbur_1789	-	hypothetical protein
1654	 44.54	0	1889763..1890128	+	121	91773736	-	Mbur_1790	-	phosphoribosyl-AMP cyclohydrolase
1655	 44.48	0	1890226..1892082	+	618	91773737	-	Mbur_1791	-	ATPase
1656	 44.78	0	1892128..1892424	-	98	91773738	-	Mbur_1792	-	cobalt transport protein CbiN
1657	 44.90	0	1892421..1893077	-	218	91773739	-	Mbur_1793	-	cobalt transport protein CbiM
1658	 42.57	0	1893364..1894218	+	284	91773740	-	Mbur_1794	-	cobalt ABC transporter, ATPase subunit
1659	 42.31	0	1894224..1895036	+	270	91773741	-	Mbur_1795	-	cobalt ABC transporter CbiQ, inner membrane subunit
1660	 44.37	0	1895120..1896415	+	431	91773742	-	Mbur_1796	-	UDP-glucose 6-dehydrogenase
1661	 38.06	0	1896566..1896988	-	140	91773743	-	Mbur_1797	-	hypothetical protein
1662	 32.77	-2	1896972..1897328	-	118	91773744	-	Mbur_1798	-	hypothetical protein
1663	 43.19	0	1898547..1899155	+	202	91773745	hisH	Mbur_1801	-	imidazole glycerol phosphate synthase subunit HisH
1664	 48.00	+1	1899170..1900492	+	440	91773746	-	Mbur_1802	-	AIR synthase related protein
1665	 44.37	0	1900496..1901809	-	437	91773747	-	Mbur_1803	-	nodulation efficiency protein NfeD
1666	 44.80	0	1901825..1902583	-	252	91773748	-	Mbur_1804	-	SPFH domain-containing protein/band 7 family protein
1667	 46.00	0	1902698..1904821	+	707	91773749	-	Mbur_1805	-	phosphoesterase, RecJ-like protein
1668	 46.57	+1	1904888..1905499	-	203	91773750	-	Mbur_1806	-	orotate phosphoribosyltransferase
1669	 42.92	0	1905564..1906043	-	159	91773751	-	Mbur_1807	-	hypothetical protein
1670	 41.76	0	1906114..1907478	-	454	91773752	-	Mbur_1808	-	circadian clock protein KaiC
1671	 45.20	0	1907649..1908440	+	263	91773753	nadE	Mbur_1809	-	NAD synthetase
1672	 45.68	0	1908432..1909727	-	431	91773754	-	Mbur_1810	-	nucleic acid binding protein
1673	 41.87	0	1909802..1910773	+	323	91773755	-	Mbur_1811	-	hypothetical protein
1674	 41.87	0	1910889..1911497	+	202	91773756	-	Mbur_1812	-	phosphoribosylglycinamide formyltransferase
1675	 45.22	0	1911606..1912850	+	414	91773757	-	Mbur_1813	-	serine hydroxymethyltransferase
1676	 49.13	+1	1912879..1913739	+	286	91773758	-	Mbur_1814	-	methenyltetrahydrofolate cyclohydrolase
1677	 48.74	+1	1913818..1915050	+	410	91773759	-	Mbur_1815	-	dihydropteroate synthase
1678	 51.06	+2	1915047..1915661	+	204	91773760	-	Mbur_1816	-	hypothetical protein
1679	 37.70	0	1915804..1916535	-	243	91773761	-	Mbur_1817	-	hypothetical protein
1680	 40.66	0	1916553..1916975	-	140	91773762	-	Mbur_1818	-	hypothetical protein
1681	 34.69	-1	1917265..1918074	+	269	91773763	-	Mbur_1819	-	hypothetical protein
1682	 39.10	0	1918550..1919017	+	155	91773764	-	Mbur_1820	-	hypothetical protein
1683	 36.17	-1	1919094..1919798	+	234	91773765	-	Mbur_1821	-	hypothetical protein
1684	 36.90	-1	1919942..1920529	+	195	91773766	-	Mbur_1822	-	hypothetical protein
1685	 40.11	0	1921036..1921596	+	186	91773767	-	Mbur_1824	-	hypothetical protein
1686	 37.57	0	1921970..1922866	+	298	91773768	-	Mbur_1825	-	hypothetical protein
1687	 51.22	+2	1923691..1924305	+	204	91773769	-	Mbur_1827	-	hypothetical protein
1688	 37.27	-1	1924649..1925740	+	363	91773770	-	Mbur_1828	-	hypothetical protein
1689	 37.55	0	1927079..1927813	-	244	91773771	-	Mbur_1830	-	hypothetical protein
1690	 40.66	0	1927831..1928253	-	140	91773772	-	Mbur_1831	-	hypothetical protein
1691	 42.96	0	1928543..1928947	+	134	91773773	-	Mbur_1832	-	hypothetical protein
1692	 40.39	0	1929057..1930643	+	528	91773774	-	Mbur_1833	-	hypothetical protein
1693	 40.58	0	1930640..1931563	+	307	91773775	-	Mbur_1834	-	ABC efflux pump, inner membrane subunit
1694	 44.25	0	1931569..1932438	+	289	91773776	-	Mbur_1835	-	hypothetical protein
1695	 43.84	0	1932448..1933656	+	402	91773777	-	Mbur_1836	-	hypothetical protein
1696	 43.39	0	1933663..1934646	+	327	91773778	-	Mbur_1837	-	ABC transporter, ATPase subunit
1697	 36.56	-1	1934721..1935806	+	361	91773779	-	Mbur_1838	-	hypothetical protein
1698	 39.01	0	1935843..1936124	+	93	91773780	-	Mbur_1839	-	hypothetical protein
1699	 32.60	-2	1936355..1937860	-	501	91773781	-	Mbur_1840	-	hypothetical protein
1700	 39.27	0	1937996..1940857	-	953	91773782	-	Mbur_1841	-	HsdR family type I site-specific deoxyribonuclease
1701	 34.35	-1	1940886..1942061	-	391	91773783	-	Mbur_1842	-	restriction modification system DNA specificity subunit
1702	 43.00	0	1942089..1943753	-	554	91773784	-	Mbur_1843	-	type I restriction-modification system, M subunit
1703	 37.46	0	1943971..1944261	+	96	91773785	-	Mbur_1844	-	hypothetical protein
1704	 31.33	-2	1944258..1944506	+	82	91773786	-	Mbur_1845	-	hypothetical protein
1705	 41.57	0	1944903..1945691	+	262	91773787	-	Mbur_1846	-	hypothetical protein
1706	 48.70	+1	1945750..1946634	+	294	91773788	-	Mbur_1847	-	methylenetetrahydrofolate reductase
1707	 47.60	+1	1946666..1947913	+	415	91773789	-	Mbur_1848	-	thiamine biosynthesis protein ThiC
1708	 48.45	+1	1947918..1948691	+	257	91773790	-	Mbur_1849	-	coenzyme F420-0 gamma-glutamyl ligase
1709	 38.00	0	1948694..1949164	+	156	91773791	-	Mbur_1850	-	hypothetical protein
1710	 47.78	+1	1949237..1949506	+	89	91773792	-	Mbur_1851	-	thioredoxin-related
1711	 46.35	0	1949603..1950616	+	337	91773793	-	Mbur_1852	-	putative mRNA 3-end processing factor
1712	 45.38	0	1950703..1951092	+	129	91773794	-	Mbur_1853	-	hypothetical protein
1713	 45.54	0	1951167..1952936	+	589	91773795	-	Mbur_1854	-	putative ATPase RIL
1714	 43.99	0	1952964..1953254	-	96	91773796	-	Mbur_1855	-	hypothetical protein
1715	 39.27	0	1953320..1955122	-	600	91773797	-	Mbur_1856	-	hypothetical protein
1716	 46.59	+1	1955221..1956042	+	273	91773798	-	Mbur_1857	-	imidazole glycerol phosphate synthase subunit HisF
1717	 43.75	0	1956065..1956352	+	95	91773799	-	Mbur_1858	-	MazG nucleotide pyrophosphohydrolase
1718	 39.90	0	1956534..1957493	+	319	91773800	-	Mbur_1859	-	hypothetical protein
1719	 35.02	-1	1957493..1957729	+	78	91773801	-	Mbur_1860	-	hypothetical protein
1720	 47.88	+1	1957874..1960306	+	810	91773802	-	Mbur_1861	-	peptidase U32
1721	 48.24	+1	1960303..1960671	+	122	91773803	-	Mbur_1862	-	deoxynucleoside 5'-monophosphate N-glycosidase
1722	 40.65	0	1960762..1961007	+	81	91773804	-	Mbur_1863	-	hypothetical protein
1723	 44.59	0	1960981..1961646	-	221	91773805	-	Mbur_1864	-	hypothetical protein
1724	 47.95	+1	1961649..1963235	-	528	91773806	lysK	Mbur_1865	-	lysyl-tRNA synthetase
1725	 32.40	-2	1963467..1964426	-	319	91773807	-	Mbur_1866	-	hypothetical protein
1726	 46.29	0	1964506..1965555	-	349	91773808	-	Mbur_1867	-	Orn/DAP/Arg decarboxylase 2
1727	 47.59	+1	1965552..1966526	-	324	91773809	-	Mbur_1868	-	deoxyhypusine synthase
1728	 43.28	0	1966817..1967560	+	247	91773810	-	Mbur_1869	-	hypothetical protein
1729	 47.70	+1	1968052..1968594	+	180	91773811	-	Mbur_1870	-	pyruvoyl-dependent arginine decarboxylase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.