IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1577	 34.95	-1	1796720..1797277	-	185	91773659	-	Mbur_1709	-	hypothetical protein
1578	 35.63	-1	1797569..1798483	-	304	91773660	-	Mbur_1710	-	peptidase
1579	 32.17	-2	1798602..1799030	-	142	91773661	-	Mbur_1711	-	hypothetical protein
1580	 36.41	-1	1799188..1800456	-	422	91773662	-	Mbur_1712	-	hypothetical protein
1581	 43.85	0	1800915..1801475	-	186	91773663	-	Mbur_1713	-	NADPH-dependent FMN reductase
1582	 27.05	-2	1801671..1801877	-	68	91773664	-	Mbur_1714	-	hypothetical protein
1583	 28.64	-2	1801893..1802894	-	333	91773665	-	Mbur_1715	-	hypothetical protein
1584	 44.57	0	1803282..1804073	-	263	91773666	-	Mbur_1716	-	ABC transporter, inner membrane subunit
1585	 44.23	0	1804078..1804995	-	305	91773667	-	Mbur_1717	-	ABC transporter, ATPase subunit
1586	 41.53	0	1805222..1806991	+	589	91773668	-	Mbur_1718	-	hypothetical protein
1587	 35.86	-1	1807253..1807450	-	65	91773669	-	Mbur_1719	-	XRE family transcriptional regulator
1588	 40.20	0	1807447..1807839	-	130	91773670	-	Mbur_1720	-	hypothetical protein
1589	 35.92	-1	1807851..1808237	-	128	91773671	-	Mbur_1721	-	hypothetical protein
1590	 34.91	-1	1809010..1810215	+	401	91773672	-	Mbur_1722	-	hypothetical protein
1591	 45.61	0	1810472..1811188	-	238	91773673	-	Mbur_1723	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1592	 43.90	0	1811193..1811864	-	223	91773674	-	Mbur_1724	-	hypothetical protein
1593	 41.64	0	1812062..1812940	+	292	91773675	-	Mbur_1725	-	Ion transport protein
1594	 41.30	0	1812971..1814551	+	526	91773676	-	Mbur_1726	-	hypothetical protein
1595	 38.54	0	1814621..1814908	+	95	91773677	-	Mbur_1727	-	hypothetical protein
1596	 48.55	+1	1815248..1816141	+	297	91773678	-	Mbur_1728	-	tetrahydromethanopterin formyltransferase
1597	 41.81	0	1816318..1816836	+	172	91773679	-	Mbur_1729	-	putative lipoprotein
1598	 42.64	0	1816916..1818301	-	461	91773680	-	Mbur_1730	-	TraB family protein
1599	 39.69	0	1818310..1819410	-	366	91773681	-	Mbur_1731	-	peptidase M50
1600	 35.09	-1	1819682..1820821	-	379	91773682	-	Mbur_1732	-	L-tyrosine decarboxylase
1601	 38.19	0	1821769..1823004	+	411	91773683	cdc6	Mbur_1733	-	cell division control protein 6
1602	 39.10	0	1823050..1823604	-	184	91773684	-	Mbur_1734	-	peptidase S26B, signal peptidase
1603	 41.85	0	1825512..1826462	+	316	91773685	-	Mbur_1737	-	tRNA-modifying enzyme
1604	 44.82	0	1826628..1827872	+	414	91773686	-	Mbur_1738	-	peptide chain release factor 1
1605	 45.72	0	1827895..1829598	+	567	91773687	argS	Mbur_1739	-	arginyl-tRNA synthetase
1606	 39.72	0	1829641..1829922	+	93	91773688	-	Mbur_1740	-	hypothetical protein
1607	 37.80	0	1830426..1832105	+	559	91773689	-	Mbur_1741	-	hypothetical protein
1608	 38.43	0	1832383..1833735	-	450	91773690	-	Mbur_1742	-	proteinase inhibitor I4, serpin
1609	 37.79	0	1834015..1834575	+	186	91773691	-	Mbur_1743	-	hypothetical protein
1610	 37.83	0	1834709..1835353	+	214	91773692	-	Mbur_1744	-	transglutaminase-like protein
1611	 42.19	0	1835438..1836340	+	300	91773693	-	Mbur_1745	-	hypothetical protein
1612	 43.12	0	1836566..1837045	+	159	91773694	-	Mbur_1746	-	hypothetical protein
1613	 31.42	-2	1837131..1837757	+	208	91773695	-	Mbur_1747	-	hypothetical protein
1614	 39.52	0	1837770..1839062	+	430	91773696	-	Mbur_1748	-	peptidase M28
1615	 38.74	0	1839329..1840198	+	289	91773697	-	Mbur_1749	-	hypothetical protein
1616	 35.83	-1	1840312..1840551	+	79	91773698	-	Mbur_1750	-	hypothetical protein
1617	 42.40	0	1840775..1841182	+	135	91773699	-	Mbur_1751	-	putative inorganic pyrophosphatase
1618	 40.72	0	1843009..1844010	-	333	91773700	-	Mbur_1752	-	hypothetical protein
1619	 43.96	0	1844316..1845350	-	344	91773701	-	Mbur_1753	-	cobalamin synthesis protein, P47K
1620	 44.00	0	1845524..1846564	+	346	91773702	-	Mbur_1754	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1621	 40.59	0	1846792..1847535	+	247	91773703	-	Mbur_1755	-	ATPase
1622	 38.68	0	1847548..1848033	+	161	91773704	-	Mbur_1756	-	hypothetical protein
1623	 41.52	0	1848519..1849556	-	345	91773705	-	Mbur_1757	-	elongation factor Tu domain-containing protein
1624	 42.56	0	1849614..1850567	-	317	91773706	-	Mbur_1758	-	ATP dependent DNA ligase
1625	 42.60	0	1850788..1851564	-	258	91773707	-	Mbur_1759	-	CBS domain-containing protein
1626	 40.48	0	1851630..1852469	-	279	91773708	-	Mbur_1760	-	CBS domain-containing protein
1627	 39.77	0	1852515..1853462	-	315	91773709	-	Mbur_1761	-	CBS domain-containing protein
1628	 39.51	0	1853637..1854413	-	258	91773710	-	Mbur_1762	-	CBS domain-containing protein
1629	 40.13	0	1854452..1855054	-	200	91773711	-	Mbur_1763	-	CBS domain-containing protein
1630	 43.14	0	1855141..1856262	-	373	91773712	-	Mbur_1764	-	replication factor A
1631	 44.39	0	1856497..1857147	+	216	91773713	-	Mbur_1765	-	RNA 2'-phosphotransferase-like protein
1632	 40.46	0	1857150..1858145	-	331	91773714	-	Mbur_1766	-	RNA 3'-terminal-phosphate cyclase
1633	 43.54	0	1858142..1859503	-	453	91773715	-	Mbur_1767	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1634	 37.78	0	1859996..1860310	+	104	91773716	-	Mbur_1768	-	hypothetical protein
1635	 44.47	0	1860519..1861946	+	475	91773717	-	Mbur_1769	-	DNA primase
1636	 38.70	0	1862426..1862947	-	173	91773718	-	Mbur_1771	-	SSU ribosomal protein S18P alanine acetyltransferase
1637	 45.45	0	1863041..1864888	-	615	91773719	-	Mbur_1772	-	tRNA-guanine transglycosylases, various specificities
1638	 49.49	+1	1864978..1866351	+	457	91773720	-	Mbur_1773	-	D-lactate dehydrogenase (cytochrome)
1639	 43.88	0	1866353..1867423	+	356	91773721	-	Mbur_1774	-	hypothetical protein
1640	 37.70	0	1867426..1868958	-	510	91773722	-	Mbur_1775	-	PAS/PAC sensor hybrid histidine kinase
1641	 45.64	0	1869018..1870886	-	622	91773723	-	Mbur_1776	-	hypothetical protein
1642	 46.38	0	1870898..1871533	-	211	91773724	-	Mbur_1777	-	beta-lactamase-like protein
1643	 41.61	0	1871554..1872399	-	281	91773725	-	Mbur_1778	-	TatD-related deoxyribonuclease
1644	 34.84	-1	1872502..1873758	+	418	91773726	-	Mbur_1779	-	hypothetical protein
1645	 33.75	-1	1873767..1874006	+	79	91773727	-	Mbur_1780	-	hypothetical protein
1646	 48.68	+1	1874153..1875481	-	442	91773728	-	Mbur_1781	-	2-isopropylmalate synthase
1647	 34.27	-1	1882591..1883334	+	247	91773729	-	Mbur_1782	-	UbiA prenyltransferase
1648	 40.06	0	1883321..1884748	+	475	91773730	-	Mbur_1783	-	dihydrolipoamide dehydrogenase
1649	 45.34	0	1885246..1886661	+	471	91773731	-	Mbur_1785	-	sodium/glutamate symporter
1650	 46.72	+1	1886812..1887162	-	116	91773732	nac	Mbur_1786	-	nascent polypeptide-associated complex protein
1651	 42.90	0	1887227..1887550	-	107	91773733	-	Mbur_1787	-	HesB/YadR/YfhF
1652	 40.44	0	1887646..1888827	-	393	91773734	-	Mbur_1788	-	hypothetical protein
1653	 41.70	0	1888870..1889634	-	254	91773735	-	Mbur_1789	-	hypothetical protein
1654	 44.54	0	1889763..1890128	+	121	91773736	-	Mbur_1790	-	phosphoribosyl-AMP cyclohydrolase
1655	 44.48	0	1890226..1892082	+	618	91773737	-	Mbur_1791	-	ATPase
1656	 44.78	0	1892128..1892424	-	98	91773738	-	Mbur_1792	-	cobalt transport protein CbiN
1657	 44.90	0	1892421..1893077	-	218	91773739	-	Mbur_1793	-	cobalt transport protein CbiM
1658	 42.57	0	1893364..1894218	+	284	91773740	-	Mbur_1794	-	cobalt ABC transporter, ATPase subunit
1659	 42.31	0	1894224..1895036	+	270	91773741	-	Mbur_1795	-	cobalt ABC transporter CbiQ, inner membrane subunit
1660	 44.37	0	1895120..1896415	+	431	91773742	-	Mbur_1796	-	UDP-glucose 6-dehydrogenase
1661	 38.06	0	1896566..1896988	-	140	91773743	-	Mbur_1797	-	hypothetical protein
1662	 32.77	-2	1896972..1897328	-	118	91773744	-	Mbur_1798	-	hypothetical protein
1663	 43.19	0	1898547..1899155	+	202	91773745	hisH	Mbur_1801	-	imidazole glycerol phosphate synthase subunit HisH
1664	 48.00	+1	1899170..1900492	+	440	91773746	-	Mbur_1802	-	AIR synthase related protein
1665	 44.37	0	1900496..1901809	-	437	91773747	-	Mbur_1803	-	nodulation efficiency protein NfeD
1666	 44.80	0	1901825..1902583	-	252	91773748	-	Mbur_1804	-	SPFH domain-containing protein/band 7 family protein
1667	 46.00	0	1902698..1904821	+	707	91773749	-	Mbur_1805	-	phosphoesterase, RecJ-like protein
1668	 46.57	+1	1904888..1905499	-	203	91773750	-	Mbur_1806	-	orotate phosphoribosyltransferase
1669	 42.92	0	1905564..1906043	-	159	91773751	-	Mbur_1807	-	hypothetical protein
1670	 41.76	0	1906114..1907478	-	454	91773752	-	Mbur_1808	-	circadian clock protein KaiC
1671	 45.20	0	1907649..1908440	+	263	91773753	nadE	Mbur_1809	-	NAD synthetase
1672	 45.68	0	1908432..1909727	-	431	91773754	-	Mbur_1810	-	nucleic acid binding protein
1673	 41.87	0	1909802..1910773	+	323	91773755	-	Mbur_1811	-	hypothetical protein
1674	 41.87	0	1910889..1911497	+	202	91773756	-	Mbur_1812	-	phosphoribosylglycinamide formyltransferase
1675	 45.22	0	1911606..1912850	+	414	91773757	-	Mbur_1813	-	serine hydroxymethyltransferase
1676	 49.13	+1	1912879..1913739	+	286	91773758	-	Mbur_1814	-	methenyltetrahydrofolate cyclohydrolase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.