IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.89   STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
110	 41.92	0	100450..101043	-	197	91772192	-	Mbur_0116	-	ATP-binding protein
111	 47.83	+1	101046..101390	-	114	91772193	-	Mbur_0117	-	hypothetical protein
112	 47.56	+1	101491..101940	-	149	91772194	-	Mbur_0118	-	30S ribosomal protein S19e
113	 45.60	0	102155..103426	-	423	91772195	-	Mbur_0119	-	adenylosuccinate synthetase
114	 41.14	0	103569..104234	+	221	91772196	-	Mbur_0120	-	hexapaptide repeat-containing transferase
115	 44.75	0	104255..105331	+	358	91772197	-	Mbur_0121	-	DegT/DnrJ/EryC1/StrS aminotransferase
116	 42.25	0	105328..106269	+	313	91772198	-	Mbur_0122	-	oxidoreductase-like protein
117	 35.34	-1	106284..106781	-	165	91772199	-	Mbur_0123	-	VanZ like protein
118	 38.23	0	106975..107955	+	326	91772200	-	Mbur_0124	-	glycosyl transferase family protein
119	 40.57	0	107981..109237	-	418	91772201	-	Mbur_0125	-	hypothetical protein
120	 42.89	0	109535..110476	-	313	91772202	-	Mbur_0126	-	TPR repeat-containing protein
121	 40.57	0	111229..111546	+	105	91772203	-	Mbur_0128	-	hypothetical protein
122	 36.82	-1	112306..112821	+	171	91772204	-	Mbur_0129	-	hypothetical protein
123	 45.74	0	113408..114181	-	257	91772205	-	Mbur_0130	-	UBA/THIF-type NAD/FAD binding protein
124	 37.79	0	114393..115334	-	313	91772206	-	Mbur_0131	-	transposase, IS4
125	 46.35	0	115542..117908	+	788	91772207	-	Mbur_0132	-	putative monovalent cation/H+ antiporter subunit A
126	 45.95	0	117908..118327	+	139	91772208	-	Mbur_0133	-	putative monovalent cation/H+ antiporter subunit B
127	 46.34	0	118320..118742	+	140	91772209	-	Mbur_0134	-	putative monovalent cation/H+ antiporter subunit C
128	 46.43	+1	118739..120280	+	513	91772210	-	Mbur_0135	-	putative monovalent cation/H+ antiporter subunit D
129	 40.61	0	120277..120771	+	164	91772211	-	Mbur_0136	-	putative monovalent cation/H+ antiporter subunit E
130	 40.82	0	120768..121034	+	88	91772212	-	Mbur_0137	-	putative monovalent cation/H+ antiporter subunit F
131	 42.82	0	121031..121378	+	115	91772213	-	Mbur_0138	-	putative monovalent cation/H+ antiporter subunit G
132	 43.97	0	121415..122467	+	350	91772214	-	Mbur_0139	-	translation factor SUA5
133	 39.43	0	122475..122720	+	81	91772215	-	Mbur_0140	-	hypothetical protein
134	 47.35	+1	122790..124109	-	439	91772216	-	Mbur_0141	-	signal recognition particle protein Srp54
135	 44.69	0	124585..124998	+	137	91772217	-	Mbur_0142	-	hypothetical protein
136	 37.27	-1	125074..125835	+	253	91772218	-	Mbur_0143	-	hypothetical protein
137	 42.72	0	125849..126913	-	354	91772219	-	Mbur_0144	-	DNA-directed DNA polymerase
138	 40.55	0	127050..127340	+	96	91772220	-	Mbur_0145	-	hypothetical protein
139	 38.97	0	127460..127654	+	64	91772221	rps17E	Mbur_0146	-	30S ribosomal protein S17e
140	 46.69	+1	127674..128549	+	291	91772222	-	Mbur_0147	-	dihydrodipicolinate synthase
141	 47.10	+1	128546..129337	+	263	91772223	-	Mbur_0148	-	dihydrodipicolinate reductase
142	 33.33	-1	129478..130065	+	195	91772224	-	Mbur_0149	-	hypothetical protein
143	 35.61	-1	134240..135031	-	263	91772225	-	Mbur_0155	-	hypothetical protein
144	 39.96	0	135080..135532	-	150	91772226	-	Mbur_0156	-	hypothetical protein
145	 49.00	+1	135938..137086	-	382	91772227	-	Mbur_0157	-	AAA ATPase
146	 40.91	0	137348..137941	-	197	91772228	-	Mbur_0158	-	phosphoesterase, PA-phosphatase related
147	 40.65	0	138540..138785	-	81	91772229	-	Mbur_0159	-	hypothetical protein
148	 39.94	0	138861..139223	-	120	91772230	-	Mbur_0160	-	hypothetical protein
149	 32.73	-2	139878..140873	+	331	91772231	-	Mbur_0161	-	hypothetical protein
150	 36.59	-1	141168..142334	-	388	91772232	-	Mbur_0162	-	transposase
151	 40.64	0	143381..143722	+	113	91772233	-	Mbur_0164	-	hypothetical protein
152	 47.30	+1	143844..144695	+	283	91772234	-	Mbur_0165	-	UbiE/COQ5 methyltransferase
153	 28.83	-2	145426..145980	+	184	91772235	-	Mbur_0166	-	ArsR family transcriptional regulator
154	 34.31	-1	145977..146894	-	305	91772236	-	Mbur_0167	-	hypothetical protein
155	 31.76	-2	146910..147608	-	232	91772237	-	Mbur_0168	-	hypothetical protein
156	 36.60	-1	147931..148665	+	244	91772238	-	Mbur_0169	-	hypothetical protein
157	 37.27	-1	148695..149963	+	422	91772239	-	Mbur_0170	-	radical SAM family Fe-S protein
158	 29.59	-2	149941..150714	+	257	91772240	-	Mbur_0171	-	alpha/beta hydrolase
159	 31.76	-2	151491..153074	+	527	91772241	-	Mbur_0172	-	hypothetical protein
160	 32.54	-2	153079..153963	+	294	91772242	-	Mbur_0173	-	hypothetical protein
161	 49.36	+1	154400..156034	-	544	91772243	-	Mbur_0174	-	acetolactate synthase, large subunit
162	 49.49	+1	156036..157403	-	455	91772244	-	Mbur_0175	-	succinate-semialdehyde dehydrogenase (NAD(P)+)
163	 46.44	+1	157947..158297	-	116	91772245	-	Mbur_0176	-	hypothetical protein
164	 42.93	0	158321..158518	-	65	91772246	-	Mbur_0177	-	small ribonucleoprotein
165	 44.09	0	158685..159056	-	123	91772247	-	Mbur_0178	-	hypothetical protein
166	 44.55	0	159147..161624	-	825	91772248	-	Mbur_0179	-	DEAD/DEAH box helicase-like protein
167	 38.98	0	161797..162699	+	300	91772249	-	Mbur_0180	-	hypothetical protein
168	 42.22	0	163649..164413	-	254	91772250	-	Mbur_0182	-	methylthioadenosine phosphorylase
169	 40.81	0	164432..165568	-	378	91772251	-	Mbur_0183	-	hypothetical protein
170	 48.24	+1	165839..166462	-	207	91772252	-	Mbur_0184	-	hypothetical protein
171	 47.34	+1	166478..169654	-	1058	91772253	ileS	Mbur_0185	-	isoleucyl-tRNA synthetase
172	 46.00	0	169809..171134	-	441	91772254	-	Mbur_0186	-	L-lysine 2,3-aminomutase
173	 41.53	0	171407..171955	+	182	91772255	-	Mbur_0187	-	RNA-binding protein
174	 41.21	0	172131..172511	+	126	91772256	-	Mbur_0188	-	hypothetical protein
175	 45.65	0	172508..173173	+	221	91772257	-	Mbur_0189	-	ZPR1-like zinc finger protein
176	 45.09	0	173231..174667	+	478	91772258	-	Mbur_0190	-	prolyl-tRNA synthetase
177	 45.50	0	174690..175733	+	347	91772259	-	Mbur_0191	-	hypothetical protein
178	 47.81	+1	176578..177171	+	197	91772260	-	Mbur_0192	-	50S ribosomal protein L15e
179	 45.18	0	177168..177623	+	151	91772261	-	Mbur_0193	-	hypothetical protein
180	 44.49	0	177616..178341	+	241	91772262	-	Mbur_0194	-	ribonuclease P protein component 3
181	 44.44	0	178338..178706	+	122	91772263	-	Mbur_0195	-	ribonuclease P-related protein
182	 46.72	+1	178818..179609	+	263	91772264	-	Mbur_0196	-	proteasome subunit alpha
183	 44.30	0	179653..180345	+	230	91772265	-	Mbur_0197	-	putative RNA-associated protein
184	 42.17	0	180357..181148	+	263	91772266	-	Mbur_0198	-	exosome complex RNA-binding protein Rrp4
185	 46.51	+1	181199..182230	+	343	91772267	-	Mbur_0199	-	exosome complex exonuclease Rrp41
186	 45.38	0	182223..183002	+	259	91772268	-	Mbur_0200	-	exosome complex RNA-binding protein Rrp42
187	 43.40	0	183096..183383	+	95	91772269	rpl37ae	Mbur_0201	-	50S ribosomal protein L37Ae
188	 47.52	+1	183389..183529	+	46	91772270	-	Mbur_0202	-	DNA-directed RNA polymerase subunit P
189	 39.53	0	183536..184003	+	155	91772271	-	Mbur_0203	-	Imp4 family protein
190	 43.14	0	184000..184254	+	84	91772272	-	Mbur_0204	-	hypothetical protein
191	 47.18	+1	184339..184692	+	117	91772273	-	Mbur_0205	-	prefoldin, beta subunit
192	 44.51	0	184754..185719	+	321	91772274	-	Mbur_0206	-	phosphoesterase, RecJ-like protein
193	 44.60	0	185770..187074	+	434	91772275	-	Mbur_0207	-	phenylacetate-CoA ligase
194	 43.84	0	187118..187555	+	145	91772276	-	Mbur_0208	-	amino acid-binding (ACT) protein
195	 46.15	0	187655..188005	+	116	91772277	-	Mbur_0209	-	hypothetical protein
196	 44.07	0	188022..188999	+	325	91772278	-	Mbur_0210	-	hypothetical protein
197	 39.36	0	189047..189859	-	270	91772279	-	Mbur_0211	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
198	 42.17	0	189863..191152	+	429	91772280	-	Mbur_0212	-	hypothetical protein
199	 43.78	0	191160..192107	+	315	91772281	-	Mbur_0213	-	triphosphoribosyl-dephospho-CoA protein
200	 41.21	0	192107..192703	+	198	91772282	-	Mbur_0214	-	hypothetical protein
201	 42.92	0	192707..193186	+	159	91772283	-	Mbur_0215	-	CMP/dCMP deaminase, zinc-binding
202	 40.29	0	193202..194092	-	296	91772284	-	Mbur_0216	-	TPR repeat-containing protein
203	 42.16	0	194363..196921	+	852	91772285	-	Mbur_0217	-	multi-sensor protein
204	 43.50	0	197068..197913	+	281	91772286	-	Mbur_0218	-	hypothetical protein
205	 43.79	0	198129..198482	+	117	91772287	rpl7ae	Mbur_0219	-	50S ribosomal protein L7Ae
206	 46.76	+1	198505..198720	+	71	91772288	rps28e	Mbur_0220	-	30S ribosomal protein S28e
207	 43.39	0	198726..198914	+	62	91772289	-	Mbur_0221	-	50S ribosomal protein L24e
208	 47.78	+1	198929..199378	+	149	91772290	-	Mbur_0222	-	nucleoside diphosphate kinase
209	 44.37	0	199534..201309	+	591	91772291	-	Mbur_0223	-	translation initiation factor IF-2
41.89	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.