IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1481	 29.39	-2	1680154..1681800	+	548	91773563	-	Mbur_1601	-	hypothetical protein
1482	 32.86	-2	1681943..1683406	+	487	91773564	-	Mbur_1602	-	radical SAM family Fe-S protein
1483	 38.71	0	1683455..1684570	+	371	91773565	-	Mbur_1603	-	NAD-dependent epimerase/dehydratase
1484	 38.36	0	1684563..1685000	+	145	91773566	-	Mbur_1604	-	dTDP-4-dehydrorhamnose epimerase
1485	 37.60	0	1685009..1685782	+	257	91773567	-	Mbur_1605	-	nucleotidyl transferase
1486	 41.64	0	1685782..1686900	+	372	91773568	-	Mbur_1606	-	DegT/DnrJ/EryC1/StrS aminotransferase
1487	 34.52	-1	1686941..1687783	+	280	91773569	-	Mbur_1607	-	glycosyl transferase family protein
1488	 38.95	0	1687881..1689002	+	373	91773570	-	Mbur_1608	-	glycosyl transferase family protein
1489	 41.51	0	1689047..1689670	+	207	91773571	-	Mbur_1609	-	acetyltransferase
1490	 44.69	0	1689707..1690780	+	357	91773572	-	Mbur_1610	-	DegT/DnrJ/EryC1/StrS aminotransferase
1491	 42.16	0	1690777..1691784	+	335	91773573	-	Mbur_1611	-	oxidoreductase-like protein
1492	 41.92	0	1691806..1692678	-	290	91773574	-	Mbur_1612	-	UDP-glucose pyrophosphorylase
1493	 39.53	0	1692690..1694060	-	456	91773575	-	Mbur_1613	-	mannose-1-phosphate guanylyltransferase (GDP)
1494	 40.81	0	1694235..1695197	-	320	91773576	-	Mbur_1614	-	hypothetical protein
1495	 37.59	0	1695401..1696480	+	359	91773577	-	Mbur_1615	-	dolichyl-phosphate beta-D-mannosyltransferase
1496	 35.56	-1	1696559..1697275	+	238	91773578	-	Mbur_1616	-	hypothetical protein
1497	 36.72	-1	1697422..1699017	+	531	91773579	-	Mbur_1617	-	hypothetical protein
1498	 39.39	0	1699035..1699430	-	131	91773580	-	Mbur_1618	-	hypothetical protein
1499	 41.10	0	1699445..1700770	+	441	91773581	-	Mbur_1619	-	peptidase M24
1500	 45.08	0	1700806..1701699	+	297	91773582	-	Mbur_1620	-	methionine aminopeptidase
1501	 40.10	0	1701713..1702333	+	206	91773583	-	Mbur_1621	-	hypothetical protein
1502	 45.14	0	1702423..1702710	+	95	91773584	-	Mbur_1622	-	hypothetical protein
1503	 47.34	+1	1702719..1703753	+	344	91773585	-	Mbur_1623	-	putative RNA methylase
1504	 41.13	0	1703777..1704340	-	187	91773586	-	Mbur_1624	-	hypothetical protein
1505	 45.89	0	1704337..1705164	-	275	91773587	truA	Mbur_1625	-	tRNA pseudouridine synthase A
1506	 44.57	0	1705351..1706418	+	355	91773588	purP	Mbur_1626	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
1507	 41.82	0	1706564..1707046	-	160	91773589	-	Mbur_1627	-	hypothetical protein
1508	 40.16	0	1707091..1707603	-	170	91773590	-	Mbur_1628	-	hypothetical protein
1509	 48.83	+1	1709034..1709975	+	313	91773591	-	Mbur_1630	-	hypothetical protein
1510	 45.55	0	1710097..1710579	+	160	91773592	leuD	Mbur_1631	-	3-isopropylmalate dehydratase small subunit
1511	 50.00	+1	1710683..1711810	+	375	91773593	-	Mbur_1632	-	3-isopropylmalate dehydrogenase
1512	 40.70	0	1713418..1713702	+	94	91773594	-	Mbur_1634	-	ATPase
1513	 44.34	0	1713812..1714792	-	326	91773595	-	Mbur_1635	-	filamentation induced by cAMP protein Fic
1514	 40.35	0	1714823..1715050	-	75	91773596	-	Mbur_1636	-	hypothetical protein
1515	 32.69	-2	1715239..1715550	-	103	91773597	-	Mbur_1637	-	hypothetical protein
1516	 37.79	0	1716343..1717284	-	313	91773598	-	Mbur_1639	-	transposase, IS4
1517	 29.14	-2	1717835..1718644	+	269	91773599	-	Mbur_1641	-	hypothetical protein
1518	 39.89	0	1718675..1719040	-	121	91773600	-	Mbur_1642	-	hypothetical protein
1519	 36.97	-1	1719095..1722697	+	1200	91773601	-	Mbur_1643	-	cell surface protein
1520	 47.72	+1	1722711..1723961	+	416	91773602	-	Mbur_1644	-	hypothetical protein
1521	 40.93	0	1724154..1725509	+	451	91773603	-	Mbur_1645	-	ATPase
1522	 43.59	0	1725487..1726344	+	285	91773604	-	Mbur_1646	-	hypothetical protein
1523	 44.92	0	1726351..1727325	-	324	91773605	-	Mbur_1647	-	hypothetical protein
1524	 43.75	0	1727437..1729116	-	559	91773606	-	Mbur_1648	-	2-octaprenylphenol hydroxylase
1525	 39.53	0	1729205..1729591	-	128	91773607	-	Mbur_1649	-	hypothetical protein
1526	 34.67	-1	1729664..1730782	-	372	91773608	-	Mbur_1650	-	putative transposase, IS891/IS1136/IS1341
1527	 43.96	0	1731000..1732721	-	573	91773609	-	Mbur_1651	-	ABC transporter, ATPase subunit
1528	 46.91	+1	1732751..1733494	-	247	91773610	-	Mbur_1652	-	geranylgeranylglyceryl phosphate synthase-like protein
1529	 44.00	0	1733503..1733652	-	49	91773611	rpl40e	Mbur_1653	-	50S ribosomal protein L40e
1530	 47.61	+1	1734157..1735578	-	473	91773612	gatB	Mbur_1654	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1531	 47.20	+1	1735579..1737006	-	475	91773613	-	Mbur_1655	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
1532	 45.74	0	1737015..1737296	-	93	91773614	gatC	Mbur_1656	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1533	 38.27	0	1737518..1737922	-	134	91773615	-	Mbur_1657	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1534	 42.52	0	1738050..1738811	+	253	91773616	-	Mbur_1658	-	ArsR family transcriptional regulator
1535	 47.28	+1	1739916..1740761	-	281	91773617	-	Mbur_1659	-	hypothetical protein
1536	 45.83	0	1740978..1742666	+	562	91773618	-	Mbur_1660	-	hydroxylamine reductase
1537	 38.46	0	1742795..1743145	+	116	91773619	-	Mbur_1661	-	hypothetical protein
1538	 45.73	0	1743239..1744222	+	327	91773620	-	Mbur_1662	-	radical SAM family Fe-S protein
1539	 40.91	0	1744236..1744565	+	109	91773621	-	Mbur_1663	-	hypothetical protein
1540	 40.15	0	1750247..1750642	+	131	91773622	-	Mbur_1670	-	thioredoxin
1541	 44.89	0	1750657..1752093	+	478	91773623	-	Mbur_1671	-	hypothetical protein
1542	 45.24	0	1752141..1752812	-	223	91773624	-	Mbur_1672	-	hypothetical protein
1543	 45.54	0	1753063..1753668	+	201	91773625	tdk	Mbur_1673	-	thymidylate kinase
1544	 39.24	0	1753665..1753952	-	95	91773626	-	Mbur_1674	-	hypothetical protein
1545	 45.20	0	1753994..1754701	-	235	91773627	-	Mbur_1675	-	histidine biosynthesis
1546	 48.20	+1	1754747..1755439	+	230	91773628	-	Mbur_1676	-	hypothetical protein
1547	 47.17	+1	1755578..1757788	+	736	91773629	-	Mbur_1677	-	AAA family ATPase, CDC48 subfamily protein
1548	 45.17	0	1757829..1758521	+	230	91773630	-	Mbur_1678	-	hypothetical protein
1549	 44.56	0	1758527..1759372	-	281	91773631	ubiA	Mbur_1679	-	prenyltransferase
1550	 43.54	0	1759388..1760308	-	306	91773632	-	Mbur_1680	-	quinolinate synthetase
1551	 44.61	0	1760405..1761220	-	271	91773633	-	Mbur_1681	-	L-aspartate dehydrogenase
1552	 40.24	0	1761376..1762200	+	274	91773634	-	Mbur_1682	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
1553	 41.81	0	1762303..1763565	+	420	91773635	-	Mbur_1683	-	hypothetical protein
1554	 41.82	0	1763618..1764724	+	368	91773636	-	Mbur_1684	-	tubulin/FtsZ, GTPase
1555	 45.05	0	1764925..1765368	+	147	91773637	-	Mbur_1685	-	hypothetical protein
1556	 39.62	0	1765396..1765761	-	121	91773638	-	Mbur_1686	-	hypothetical protein
1557	 45.54	0	1765933..1767210	+	425	91773639	-	Mbur_1687	-	enolase
1558	 43.40	0	1767238..1769970	-	910	91773640	-	Mbur_1688	-	replicative DNA polymerase I
1559	 39.56	0	1770250..1770795	-	181	91773641	-	Mbur_1689	-	hypothetical protein
1560	 46.26	0	1770920..1772953	-	677	91773642	-	Mbur_1690	-	S-layer-related protein
1561	 42.18	0	1773490..1774269	+	259	91773643	-	Mbur_1691	-	KaiC
1562	 44.88	0	1774514..1777198	-	894	91773644	-	Mbur_1692	-	cation transporter, P-type ATPase
1563	 41.61	0	1777371..1777817	+	148	91773645	-	Mbur_1693	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1564	 42.36	0	1777871..1779166	-	431	91773646	-	Mbur_1694	-	PAS sensor protein
1565	 40.75	0	1779222..1780394	-	390	91773647	-	Mbur_1695	-	sodium/hydrogen exchanger
1566	 37.40	0	1780395..1780886	-	163	91773648	-	Mbur_1696	-	CBS domain-containing protein
1567	 41.95	0	1781035..1782357	-	440	91773649	-	Mbur_1697	-	cobalt ABC transporter, ATPase subunit
1568	 38.95	0	1782378..1783160	-	260	91773650	-	Mbur_1698	-	cobalt ABC transporter CbiQ, inner membrane subunit
1569	 42.67	0	1783267..1783566	-	99	91773651	-	Mbur_1699	-	cobalt transport binding protein
1570	 44.54	0	1783563..1784258	-	231	91773652	-	Mbur_1700	-	cobalt transport protein CbiM
1571	 48.68	+1	1785286..1786308	-	340	91773653	cbiD	Mbur_1702	-	cobalt-precorrin-6A synthase
1572	 47.85	+1	1786364..1788175	-	603	91773654	-	Mbur_1703	-	DNA mismatch repair protein MutL
1573	 47.41	+1	1788177..1790840	-	887	91773655	-	Mbur_1704	-	DNA mismatch repair protein
1574	 39.28	0	1790939..1791325	-	128	91773656	-	Mbur_1705	-	hypothetical protein
1575	 38.16	0	1791479..1791955	+	158	91773657	-	Mbur_1706	-	hypothetical protein
1576	 47.70	+1	1792043..1796254	-	1403	91773658	-	Mbur_1707	-	A-macroglobulin like protein
1577	 34.95	-1	1796720..1797277	-	185	91773659	-	Mbur_1709	-	hypothetical protein
1578	 35.63	-1	1797569..1798483	-	304	91773660	-	Mbur_1710	-	peptidase
1579	 32.17	-2	1798602..1799030	-	142	91773661	-	Mbur_1711	-	hypothetical protein
1580	 36.41	-1	1799188..1800456	-	422	91773662	-	Mbur_1712	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.