IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1441	 44.03	0	1638351..1638593	-	80	91773523	-	Mbur_1560	-	hypothetical protein
1442	 46.03	0	1638621..1639313	-	230	91773524	-	Mbur_1561	-	fibrillarin
1443	 46.20	0	1639314..1640378	-	354	91773525	-	Mbur_1562	-	rRNA biogenesis protein Nop56/Nop58
1444	 48.75	+1	1640329..1641288	-	319	91773526	-	Mbur_1563	-	beta-ribofuranosylaminobenzene 5'-phosphate synthase
1445	 43.93	0	1641361..1642011	-	216	91773527	-	Mbur_1564	-	hypothetical protein
1446	 46.06	0	1642053..1642445	-	130	91773528	-	Mbur_1565	-	hypothetical protein
1447	 44.29	0	1642563..1644743	-	726	91773529	-	Mbur_1566	-	Rad3-related DNA helicases
1448	 44.86	0	1644789..1645430	-	213	91773530	-	Mbur_1567	-	hypothetical protein
1449	 42.94	0	1645802..1645978	+	58	91773531	-	Mbur_1568	-	4Fe-4S ferredoxin, iron-sulfur binding
1450	 45.53	0	1646117..1646821	+	234	91773532	pyrH	Mbur_1569	-	uridylate kinase
1451	 42.66	0	1647006..1648292	+	428	91773533	-	Mbur_1570	-	flagella protein
1452	 36.05	-1	1648282..1648722	+	146	91773534	-	Mbur_1571	-	flagellar protein F
1453	 41.67	0	1648766..1649269	+	167	91773535	-	Mbur_1572	-	putative flagellar protein G
1454	 40.37	0	1649281..1649976	+	231	91773536	-	Mbur_1573	-	ATPase
1455	 43.21	0	1650000..1651649	+	549	91773537	-	Mbur_1574	-	type II secretion system protein E
1456	 41.36	0	1651659..1653314	+	551	91773538	-	Mbur_1575	-	flagellar assembly protein J
1457	 44.25	0	1654382..1655242	-	286	91773539	-	Mbur_1577	-	hypothetical protein
1458	 43.50	0	1655243..1655734	-	163	91773540	-	Mbur_1578	-	3-isopropylmalate dehydratase, small subunit
1459	 42.10	0	1655813..1658287	-	824	91773541	-	Mbur_1579	-	transmembrane oligosaccharyl transferase
1460	 42.36	0	1658460..1660364	+	634	91773542	-	Mbur_1580	-	asparagine synthase, glutamine-hydrolyzing
1461	 39.54	0	1660383..1661462	+	359	91773543	-	Mbur_1581	-	glycosyl transferase, group 1
1462	 39.47	0	1661431..1662342	+	303	91773544	-	Mbur_1582	-	NAD-dependent epimerase/dehydratase
1463	 41.59	0	1662326..1663318	+	330	91773545	-	Mbur_1583	-	NAD-dependent epimerase/dehydratase
1464	 39.61	0	1663308..1664024	+	238	91773546	-	Mbur_1584	-	nucleotidyl transferase
1465	 37.52	0	1664307..1665023	+	238	91773547	-	Mbur_1585	-	acylneuraminate cytidylyltransferase
1466	 45.40	0	1664998..1666041	+	347	91773548	-	Mbur_1586	-	N-acetylneuraminate synthase
1467	 38.47	0	1666038..1667147	+	369	91773549	-	Mbur_1587	-	UDP-N-acetylglucosamine 2-epimerase
1468	 38.34	0	1667199..1667837	+	212	91773550	-	Mbur_1588	-	hexapaptide repeat-containing transferase
1469	 39.98	0	1667854..1668966	+	370	91773551	-	Mbur_1589	-	DegT/DnrJ/EryC1/StrS aminotransferase
1470	 32.35	-2	1669365..1670075	+	236	91773552	-	Mbur_1590	-	methyltransferase FkbM
1471	 36.91	-1	1670486..1671520	+	344	91773553	-	Mbur_1591	-	polysaccharide biosynthesis protein CapD
1472	 34.18	-1	1671631..1672809	+	392	91773554	-	Mbur_1592	-	hypothetical protein
1473	 39.67	0	1672886..1674400	+	504	91773555	-	Mbur_1593	-	polysaccharide biosynthesis protein
1474	 30.68	-2	1674609..1675325	+	238	91773556	-	Mbur_1594	-	acylneuraminate cytidylyltransferase
1475	 37.63	0	1675322..1676089	+	255	91773557	-	Mbur_1595	-	2-dehydro-3-deoxyglucarate aldolase
1476	 36.06	-1	1676086..1677039	+	317	91773558	-	Mbur_1596	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1477	 32.43	-2	1677032..1677916	+	294	91773559	-	Mbur_1597	-	NAD-dependent epimerase/dehydratase
1478	 30.95	-2	1677913..1678584	+	223	91773560	-	Mbur_1598	-	putative cyclase
1479	 30.66	-2	1678574..1679209	+	211	91773561	-	Mbur_1599	-	haloacid dehalogenase-like hydrolase
1480	 30.56	-2	1679202..1680173	+	323	91773562	-	Mbur_1600	-	hypothetical protein
1481	 29.39	-2	1680154..1681800	+	548	91773563	-	Mbur_1601	-	hypothetical protein
1482	 32.86	-2	1681943..1683406	+	487	91773564	-	Mbur_1602	-	radical SAM family Fe-S protein
1483	 38.71	0	1683455..1684570	+	371	91773565	-	Mbur_1603	-	NAD-dependent epimerase/dehydratase
1484	 38.36	0	1684563..1685000	+	145	91773566	-	Mbur_1604	-	dTDP-4-dehydrorhamnose epimerase
1485	 37.60	0	1685009..1685782	+	257	91773567	-	Mbur_1605	-	nucleotidyl transferase
1486	 41.64	0	1685782..1686900	+	372	91773568	-	Mbur_1606	-	DegT/DnrJ/EryC1/StrS aminotransferase
1487	 34.52	-1	1686941..1687783	+	280	91773569	-	Mbur_1607	-	glycosyl transferase family protein
1488	 38.95	0	1687881..1689002	+	373	91773570	-	Mbur_1608	-	glycosyl transferase family protein
1489	 41.51	0	1689047..1689670	+	207	91773571	-	Mbur_1609	-	acetyltransferase
1490	 44.69	0	1689707..1690780	+	357	91773572	-	Mbur_1610	-	DegT/DnrJ/EryC1/StrS aminotransferase
1491	 42.16	0	1690777..1691784	+	335	91773573	-	Mbur_1611	-	oxidoreductase-like protein
1492	 41.92	0	1691806..1692678	-	290	91773574	-	Mbur_1612	-	UDP-glucose pyrophosphorylase
1493	 39.53	0	1692690..1694060	-	456	91773575	-	Mbur_1613	-	mannose-1-phosphate guanylyltransferase (GDP)
1494	 40.81	0	1694235..1695197	-	320	91773576	-	Mbur_1614	-	hypothetical protein
1495	 37.59	0	1695401..1696480	+	359	91773577	-	Mbur_1615	-	dolichyl-phosphate beta-D-mannosyltransferase
1496	 35.56	-1	1696559..1697275	+	238	91773578	-	Mbur_1616	-	hypothetical protein
1497	 36.72	-1	1697422..1699017	+	531	91773579	-	Mbur_1617	-	hypothetical protein
1498	 39.39	0	1699035..1699430	-	131	91773580	-	Mbur_1618	-	hypothetical protein
1499	 41.10	0	1699445..1700770	+	441	91773581	-	Mbur_1619	-	peptidase M24
1500	 45.08	0	1700806..1701699	+	297	91773582	-	Mbur_1620	-	methionine aminopeptidase
1501	 40.10	0	1701713..1702333	+	206	91773583	-	Mbur_1621	-	hypothetical protein
1502	 45.14	0	1702423..1702710	+	95	91773584	-	Mbur_1622	-	hypothetical protein
1503	 47.34	+1	1702719..1703753	+	344	91773585	-	Mbur_1623	-	putative RNA methylase
1504	 41.13	0	1703777..1704340	-	187	91773586	-	Mbur_1624	-	hypothetical protein
1505	 45.89	0	1704337..1705164	-	275	91773587	truA	Mbur_1625	-	tRNA pseudouridine synthase A
1506	 44.57	0	1705351..1706418	+	355	91773588	purP	Mbur_1626	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
1507	 41.82	0	1706564..1707046	-	160	91773589	-	Mbur_1627	-	hypothetical protein
1508	 40.16	0	1707091..1707603	-	170	91773590	-	Mbur_1628	-	hypothetical protein
1509	 48.83	+1	1709034..1709975	+	313	91773591	-	Mbur_1630	-	hypothetical protein
1510	 45.55	0	1710097..1710579	+	160	91773592	leuD	Mbur_1631	-	3-isopropylmalate dehydratase small subunit
1511	 50.00	+1	1710683..1711810	+	375	91773593	-	Mbur_1632	-	3-isopropylmalate dehydrogenase
1512	 40.70	0	1713418..1713702	+	94	91773594	-	Mbur_1634	-	ATPase
1513	 44.34	0	1713812..1714792	-	326	91773595	-	Mbur_1635	-	filamentation induced by cAMP protein Fic
1514	 40.35	0	1714823..1715050	-	75	91773596	-	Mbur_1636	-	hypothetical protein
1515	 32.69	-2	1715239..1715550	-	103	91773597	-	Mbur_1637	-	hypothetical protein
1516	 37.79	0	1716343..1717284	-	313	91773598	-	Mbur_1639	-	transposase, IS4
1517	 29.14	-2	1717835..1718644	+	269	91773599	-	Mbur_1641	-	hypothetical protein
1518	 39.89	0	1718675..1719040	-	121	91773600	-	Mbur_1642	-	hypothetical protein
1519	 36.97	-1	1719095..1722697	+	1200	91773601	-	Mbur_1643	-	cell surface protein
1520	 47.72	+1	1722711..1723961	+	416	91773602	-	Mbur_1644	-	hypothetical protein
1521	 40.93	0	1724154..1725509	+	451	91773603	-	Mbur_1645	-	ATPase
1522	 43.59	0	1725487..1726344	+	285	91773604	-	Mbur_1646	-	hypothetical protein
1523	 44.92	0	1726351..1727325	-	324	91773605	-	Mbur_1647	-	hypothetical protein
1524	 43.75	0	1727437..1729116	-	559	91773606	-	Mbur_1648	-	2-octaprenylphenol hydroxylase
1525	 39.53	0	1729205..1729591	-	128	91773607	-	Mbur_1649	-	hypothetical protein
1526	 34.67	-1	1729664..1730782	-	372	91773608	-	Mbur_1650	-	putative transposase, IS891/IS1136/IS1341
1527	 43.96	0	1731000..1732721	-	573	91773609	-	Mbur_1651	-	ABC transporter, ATPase subunit
1528	 46.91	+1	1732751..1733494	-	247	91773610	-	Mbur_1652	-	geranylgeranylglyceryl phosphate synthase-like protein
1529	 44.00	0	1733503..1733652	-	49	91773611	rpl40e	Mbur_1653	-	50S ribosomal protein L40e
1530	 47.61	+1	1734157..1735578	-	473	91773612	gatB	Mbur_1654	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1531	 47.20	+1	1735579..1737006	-	475	91773613	-	Mbur_1655	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
1532	 45.74	0	1737015..1737296	-	93	91773614	gatC	Mbur_1656	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1533	 38.27	0	1737518..1737922	-	134	91773615	-	Mbur_1657	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1534	 42.52	0	1738050..1738811	+	253	91773616	-	Mbur_1658	-	ArsR family transcriptional regulator
1535	 47.28	+1	1739916..1740761	-	281	91773617	-	Mbur_1659	-	hypothetical protein
1536	 45.83	0	1740978..1742666	+	562	91773618	-	Mbur_1660	-	hydroxylamine reductase
1537	 38.46	0	1742795..1743145	+	116	91773619	-	Mbur_1661	-	hypothetical protein
1538	 45.73	0	1743239..1744222	+	327	91773620	-	Mbur_1662	-	radical SAM family Fe-S protein
1539	 40.91	0	1744236..1744565	+	109	91773621	-	Mbur_1663	-	hypothetical protein
1540	 40.15	0	1750247..1750642	+	131	91773622	-	Mbur_1670	-	thioredoxin
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.