IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1405	 43.52	0	1598013..1598336	-	107	91773487	-	Mbur_1522	-	tetrahydromethanopterin S-methyltransferase subunit B
1406	 48.40	+1	1598333..1599142	-	269	91773488	-	Mbur_1523	-	tetrahydromethanopterin S-methyltransferase subunit C
1407	 46.94	+1	1599144..1599863	-	239	91773489	-	Mbur_1524	-	tetrahydromethanopterin S-methyltransferase subunit D
1408	 45.14	0	1599860..1600765	-	301	91773490	-	Mbur_1525	-	tetrahydromethanopterin S-methyltransferase subunit E
1409	 42.38	0	1600953..1601339	-	128	91773491	-	Mbur_1526	-	hypothetical protein
1410	 45.02	0	1601336..1602379	-	347	91773492	-	Mbur_1527	-	peptidase U32
1411	 45.19	0	1602464..1603273	+	269	91773493	-	Mbur_1528	-	xylose isomerase-like TIM barrel
1412	 44.53	0	1603287..1603697	-	136	91773494	-	Mbur_1529	-	hypothetical protein
1413	 33.87	-1	1604138..1604695	+	185	91773495	-	Mbur_1530	-	hypothetical protein
1414	 46.72	+1	1605077..1605487	+	136	91773496	-	Mbur_1531	-	histidine triad (HIT) protein
1415	 34.24	-1	1605531..1606847	-	438	91773497	-	Mbur_1532	-	filamentation induced by cAMP protein Fic
1416	 39.96	0	1607605..1608057	-	150	91773498	-	Mbur_1534	-	T/G mismatch-specific endonuclease
1417	 32.44	-2	1608171..1608845	+	224	91773499	-	Mbur_1535	-	hypothetical protein
1418	 31.44	-2	1608838..1609578	+	246	91773500	-	Mbur_1536	-	hypothetical protein
1419	 35.52	-1	1609571..1611769	+	732	91773501	-	Mbur_1537	-	type III restriction enzyme, res subunit
1420	 33.33	-1	1611935..1613908	+	657	91773502	-	Mbur_1538	-	ATPase involved in DNA repair-like protein
1421	 39.18	0	1614324..1616033	-	569	91773503	-	Mbur_1539	-	DNA-cytosine methyltransferase
1422	 39.08	0	1616610..1617131	-	173	91773504	-	Mbur_1540	-	GCN5-related N-acetyltransferase
1423	 46.52	+1	1617541..1618632	-	363	91773505	-	Mbur_1541	-	small GTP-binding protein
1424	 47.04	+1	1618683..1619900	-	405	91773506	-	Mbur_1542	-	molybdopterin molybdochelatase
1425	 47.78	+1	1619949..1620827	-	292	91773507	-	Mbur_1543	-	branched-chain amino acid aminotransferase
1426	 35.40	-1	1620929..1621459	-	176	91773508	-	Mbur_1544	-	hypothetical protein
1427	 42.63	0	1621686..1622492	-	268	91773509	-	Mbur_1545	-	ABC transporter, ATPase subunit
1428	 45.45	0	1622485..1623648	-	387	91773510	-	Mbur_1546	-	ABC transporter, inner membrane subunit
1429	 46.06	0	1623674..1624765	-	363	91773511	-	Mbur_1547	-	ligand binding protein
1430	 43.86	0	1625126..1626730	+	534	91773512	-	Mbur_1548	-	hypothetical protein
1431	 40.84	0	1626829..1628799	+	656	91773513	-	Mbur_1549	-	Pyrrolo-quinoline quinone
1432	 44.61	0	1628983..1631412	+	809	91773514	-	Mbur_1550	-	Pyrrolo-quinoline quinone
1433	 46.50	+1	1631784..1632884	-	366	91773515	-	Mbur_1551	-	ABC transporter, ATPase subunit
1434	 46.79	+1	1632894..1633562	-	222	91773516	-	Mbur_1552	-	molybdate ABC transporter inner membrane protein
1435	 41.07	0	1633562..1634362	-	266	91773517	-	Mbur_1553	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1436	 44.16	0	1634475..1634825	-	116	91773518	-	Mbur_1554	-	hypothetical protein
1437	 41.18	0	1635257..1635664	+	135	91773519	-	Mbur_1555	-	phenylacetic acid degradation-related protein
1438	 41.77	0	1635650..1636348	-	232	91773520	-	Mbur_1556	-	HAD family hydrolase
1439	 40.40	0	1636454..1636849	-	131	91773521	-	Mbur_1557	-	response regulator receiver
1440	 41.72	0	1637926..1638354	-	142	91773522	-	Mbur_1559	-	rhodanese-like protein
1441	 44.03	0	1638351..1638593	-	80	91773523	-	Mbur_1560	-	hypothetical protein
1442	 46.03	0	1638621..1639313	-	230	91773524	-	Mbur_1561	-	fibrillarin
1443	 46.20	0	1639314..1640378	-	354	91773525	-	Mbur_1562	-	rRNA biogenesis protein Nop56/Nop58
1444	 48.75	+1	1640329..1641288	-	319	91773526	-	Mbur_1563	-	beta-ribofuranosylaminobenzene 5'-phosphate synthase
1445	 43.93	0	1641361..1642011	-	216	91773527	-	Mbur_1564	-	hypothetical protein
1446	 46.06	0	1642053..1642445	-	130	91773528	-	Mbur_1565	-	hypothetical protein
1447	 44.29	0	1642563..1644743	-	726	91773529	-	Mbur_1566	-	Rad3-related DNA helicases
1448	 44.86	0	1644789..1645430	-	213	91773530	-	Mbur_1567	-	hypothetical protein
1449	 42.94	0	1645802..1645978	+	58	91773531	-	Mbur_1568	-	4Fe-4S ferredoxin, iron-sulfur binding
1450	 45.53	0	1646117..1646821	+	234	91773532	pyrH	Mbur_1569	-	uridylate kinase
1451	 42.66	0	1647006..1648292	+	428	91773533	-	Mbur_1570	-	flagella protein
1452	 36.05	-1	1648282..1648722	+	146	91773534	-	Mbur_1571	-	flagellar protein F
1453	 41.67	0	1648766..1649269	+	167	91773535	-	Mbur_1572	-	putative flagellar protein G
1454	 40.37	0	1649281..1649976	+	231	91773536	-	Mbur_1573	-	ATPase
1455	 43.21	0	1650000..1651649	+	549	91773537	-	Mbur_1574	-	type II secretion system protein E
1456	 41.36	0	1651659..1653314	+	551	91773538	-	Mbur_1575	-	flagellar assembly protein J
1457	 44.25	0	1654382..1655242	-	286	91773539	-	Mbur_1577	-	hypothetical protein
1458	 43.50	0	1655243..1655734	-	163	91773540	-	Mbur_1578	-	3-isopropylmalate dehydratase, small subunit
1459	 42.10	0	1655813..1658287	-	824	91773541	-	Mbur_1579	-	transmembrane oligosaccharyl transferase
1460	 42.36	0	1658460..1660364	+	634	91773542	-	Mbur_1580	-	asparagine synthase, glutamine-hydrolyzing
1461	 39.54	0	1660383..1661462	+	359	91773543	-	Mbur_1581	-	glycosyl transferase, group 1
1462	 39.47	0	1661431..1662342	+	303	91773544	-	Mbur_1582	-	NAD-dependent epimerase/dehydratase
1463	 41.59	0	1662326..1663318	+	330	91773545	-	Mbur_1583	-	NAD-dependent epimerase/dehydratase
1464	 39.61	0	1663308..1664024	+	238	91773546	-	Mbur_1584	-	nucleotidyl transferase
1465	 37.52	0	1664307..1665023	+	238	91773547	-	Mbur_1585	-	acylneuraminate cytidylyltransferase
1466	 45.40	0	1664998..1666041	+	347	91773548	-	Mbur_1586	-	N-acetylneuraminate synthase
1467	 38.47	0	1666038..1667147	+	369	91773549	-	Mbur_1587	-	UDP-N-acetylglucosamine 2-epimerase
1468	 38.34	0	1667199..1667837	+	212	91773550	-	Mbur_1588	-	hexapaptide repeat-containing transferase
1469	 39.98	0	1667854..1668966	+	370	91773551	-	Mbur_1589	-	DegT/DnrJ/EryC1/StrS aminotransferase
1470	 32.35	-2	1669365..1670075	+	236	91773552	-	Mbur_1590	-	methyltransferase FkbM
1471	 36.91	-1	1670486..1671520	+	344	91773553	-	Mbur_1591	-	polysaccharide biosynthesis protein CapD
1472	 34.18	-1	1671631..1672809	+	392	91773554	-	Mbur_1592	-	hypothetical protein
1473	 39.67	0	1672886..1674400	+	504	91773555	-	Mbur_1593	-	polysaccharide biosynthesis protein
1474	 30.68	-2	1674609..1675325	+	238	91773556	-	Mbur_1594	-	acylneuraminate cytidylyltransferase
1475	 37.63	0	1675322..1676089	+	255	91773557	-	Mbur_1595	-	2-dehydro-3-deoxyglucarate aldolase
1476	 36.06	-1	1676086..1677039	+	317	91773558	-	Mbur_1596	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1477	 32.43	-2	1677032..1677916	+	294	91773559	-	Mbur_1597	-	NAD-dependent epimerase/dehydratase
1478	 30.95	-2	1677913..1678584	+	223	91773560	-	Mbur_1598	-	putative cyclase
1479	 30.66	-2	1678574..1679209	+	211	91773561	-	Mbur_1599	-	haloacid dehalogenase-like hydrolase
1480	 30.56	-2	1679202..1680173	+	323	91773562	-	Mbur_1600	-	hypothetical protein
1481	 29.39	-2	1680154..1681800	+	548	91773563	-	Mbur_1601	-	hypothetical protein
1482	 32.86	-2	1681943..1683406	+	487	91773564	-	Mbur_1602	-	radical SAM family Fe-S protein
1483	 38.71	0	1683455..1684570	+	371	91773565	-	Mbur_1603	-	NAD-dependent epimerase/dehydratase
1484	 38.36	0	1684563..1685000	+	145	91773566	-	Mbur_1604	-	dTDP-4-dehydrorhamnose epimerase
1485	 37.60	0	1685009..1685782	+	257	91773567	-	Mbur_1605	-	nucleotidyl transferase
1486	 41.64	0	1685782..1686900	+	372	91773568	-	Mbur_1606	-	DegT/DnrJ/EryC1/StrS aminotransferase
1487	 34.52	-1	1686941..1687783	+	280	91773569	-	Mbur_1607	-	glycosyl transferase family protein
1488	 38.95	0	1687881..1689002	+	373	91773570	-	Mbur_1608	-	glycosyl transferase family protein
1489	 41.51	0	1689047..1689670	+	207	91773571	-	Mbur_1609	-	acetyltransferase
1490	 44.69	0	1689707..1690780	+	357	91773572	-	Mbur_1610	-	DegT/DnrJ/EryC1/StrS aminotransferase
1491	 42.16	0	1690777..1691784	+	335	91773573	-	Mbur_1611	-	oxidoreductase-like protein
1492	 41.92	0	1691806..1692678	-	290	91773574	-	Mbur_1612	-	UDP-glucose pyrophosphorylase
1493	 39.53	0	1692690..1694060	-	456	91773575	-	Mbur_1613	-	mannose-1-phosphate guanylyltransferase (GDP)
1494	 40.81	0	1694235..1695197	-	320	91773576	-	Mbur_1614	-	hypothetical protein
1495	 37.59	0	1695401..1696480	+	359	91773577	-	Mbur_1615	-	dolichyl-phosphate beta-D-mannosyltransferase
1496	 35.56	-1	1696559..1697275	+	238	91773578	-	Mbur_1616	-	hypothetical protein
1497	 36.72	-1	1697422..1699017	+	531	91773579	-	Mbur_1617	-	hypothetical protein
1498	 39.39	0	1699035..1699430	-	131	91773580	-	Mbur_1618	-	hypothetical protein
1499	 41.10	0	1699445..1700770	+	441	91773581	-	Mbur_1619	-	peptidase M24
1500	 45.08	0	1700806..1701699	+	297	91773582	-	Mbur_1620	-	methionine aminopeptidase
1501	 40.10	0	1701713..1702333	+	206	91773583	-	Mbur_1621	-	hypothetical protein
1502	 45.14	0	1702423..1702710	+	95	91773584	-	Mbur_1622	-	hypothetical protein
1503	 47.34	+1	1702719..1703753	+	344	91773585	-	Mbur_1623	-	putative RNA methylase
1504	 41.13	0	1703777..1704340	-	187	91773586	-	Mbur_1624	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.