IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1310	 45.16	0	1503902..1504510	+	202	91773392	-	Mbur_1423	-	translation initiation factor IF-2 subunit beta
1311	 43.09	0	1504560..1504805	+	81	91773393	-	Mbur_1424	-	hypothetical protein
1312	 46.12	0	1504829..1506040	+	403	91773394	-	Mbur_1425	-	radical SAM family Fe-S protein
1313	 46.81	+1	1506107..1507405	+	432	91773395	-	Mbur_1426	-	tryptophanyl-tRNA synthetase
1314	 46.96	+1	1507424..1508905	+	493	91773396	pheS	Mbur_1427	-	phenylalanyl-tRNA synthetase subunit alpha
1315	 44.74	0	1508920..1510059	-	379	91773397	-	Mbur_1428	-	hypothetical protein
1316	 42.47	0	1510063..1510620	-	185	91773398	-	Mbur_1429	-	hypothetical protein
1317	 41.61	0	1510624..1511058	-	144	91773399	-	Mbur_1430	-	GCN5-related N-acetyltransferase
1318	 43.78	0	1511061..1511864	-	267	91773400	-	Mbur_1431	-	hypothetical protein
1319	 40.74	0	1512061..1512465	+	134	91773401	-	Mbur_1432	-	hypothetical protein
1320	 43.79	0	1512615..1513628	+	337	91773402	-	Mbur_1433	-	protoporphyrin IX magnesium-chelatase
1321	 46.07	0	1515335..1515907	+	190	91773403	-	Mbur_1435	-	adenine phosphoribosyltransferase
1322	 46.69	+1	1515894..1516889	+	331	91773404	-	Mbur_1436	-	diphthamide biosynthesis protein
1323	 42.81	0	1516895..1517506	+	203	91773405	-	Mbur_1437	-	methyltransferase
1324	 43.70	0	1517581..1518294	+	237	91773406	-	Mbur_1438	-	RNA binding protein
1325	 39.86	0	1518319..1518594	+	91	91773407	-	Mbur_1439	-	DNA-directed RNA polymerase, subunit L
1326	 51.63	+2	1518674..1519837	+	387	91773408	-	Mbur_1440	-	Sep-tRNA:Cys-tRNA synthetase
1327	 29.49	-2	1520043..1520822	-	259	91773409	-	Mbur_1441	-	3-methyladenine DNA glycosylase-like protein
1328	 46.86	+1	1521024..1521230	-	68	91773410	-	Mbur_1442	-	hypothetical protein
1329	 38.62	0	1521779..1522591	+	270	91773411	-	Mbur_1443	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1330	 43.23	0	1524032..1524223	-	63	91773412	-	Mbur_1445	-	RNA-binding protein
1331	 37.79	0	1524737..1525678	+	313	91773413	-	Mbur_1446	-	transposase, IS4
1332	 42.73	0	1527031..1527711	+	226	91773414	-	Mbur_1449	-	hypothetical protein
1333	 45.90	0	1527764..1528360	-	198	91773415	-	Mbur_1450	-	hypothetical protein
1334	 42.86	0	1528488..1529642	+	384	91773416	-	Mbur_1451	-	aldo/keto reductase
1335	 40.48	0	1529789..1529956	+	55	91773417	-	Mbur_1452	-	PAS/PAC sensor signal transduction histidine kinase
1336	 43.16	0	1530004..1530237	+	77	91773418	-	Mbur_1453	-	cytochrome b5
1337	 46.49	+1	1530426..1531679	+	417	91773419	-	Mbur_1454	-	L-threonine synthase
1338	 49.54	+1	1531680..1532444	+	254	91773420	-	Mbur_1455	-	ABC transporter, ATPase subunit
1339	 47.21	+1	1532441..1533139	+	232	91773421	-	Mbur_1456	-	cobalamin synthesis protein, P47K
1340	 47.85	+1	1533143..1533769	+	208	91773422	-	Mbur_1457	-	putative Fe-S cluster protein
1341	 46.94	+1	1533766..1534272	+	168	91773423	-	Mbur_1458	-	sulfopyruvate decarboxylase subunit alpha
1342	 46.84	+1	1534269..1534838	+	189	91773424	-	Mbur_1459	-	sulfopyruvate decarboxylase subunit beta
1343	 47.12	+1	1534801..1536084	-	427	91773425	-	Mbur_1460	-	hypothetical protein
1344	 44.17	0	1536106..1538016	-	636	91773426	-	Mbur_1461	-	sodium/hydrogen exchanger
1345	 40.37	0	1538225..1539361	-	378	91773427	-	Mbur_1462	-	hypothetical protein
1346	 44.13	0	1539460..1540413	-	317	91773428	-	Mbur_1463	-	tyrosyl-tRNA synthetase
1347	 43.03	0	1540505..1541236	-	243	91773429	-	Mbur_1464	-	hypothetical protein
1348	 43.59	0	1541244..1541516	-	90	91773430	-	Mbur_1465	-	PRC-barrel protein
1349	 42.78	0	1541670..1542431	+	253	91773431	-	Mbur_1466	-	hypothetical protein
1350	 45.23	0	1542479..1544293	+	604	91773432	-	Mbur_1467	-	excinuclease ABC subunit C
1351	 42.75	0	1544559..1545248	+	229	91773433	-	Mbur_1468	-	hypothetical protein
1352	 45.08	0	1545251..1546357	-	368	91773434	-	Mbur_1469	-	radical SAM family Fe-S protein
1353	 46.13	0	1546368..1547477	-	369	91773435	-	Mbur_1470	-	peptidase M50
1354	 47.10	+1	1547505..1547918	-	137	91773436	-	Mbur_1471	-	hypothetical protein
1355	 50.25	+1	1547905..1549092	-	395	91773437	-	Mbur_1472	-	aconitase subunit 1
1356	 47.97	+1	1549160..1550437	-	425	91773438	-	Mbur_1473	-	carboxylyase-like protein
1357	 44.37	0	1550754..1551215	-	153	91773439	-	Mbur_1474	-	hypothetical protein
1358	 44.96	0	1551347..1552507	-	386	91773440	-	Mbur_1475	-	cytidyltransferase-related
1359	 45.76	0	1552732..1553085	+	117	91773441	-	Mbur_1476	-	cupin family protein
1360	 43.98	0	1553105..1553536	-	143	91773442	-	Mbur_1477	-	iron dependent repressor
1361	 45.58	0	1553626..1554597	-	323	91773443	-	Mbur_1478	-	hypothetical protein
1362	 45.80	0	1554605..1554973	-	122	91773444	-	Mbur_1479	-	4Fe-4S ferredoxin, iron-sulfur binding
1363	 45.10	0	1554988..1555191	-	67	91773445	-	Mbur_1480	-	hypothetical protein
1364	 46.08	0	1555355..1556107	-	250	91773446	-	Mbur_1481	-	hypothetical protein
1365	 43.79	0	1556220..1556879	-	219	91773447	-	Mbur_1482	-	nitrite and sulphite reductase, 4Fe-4S subunit
1366	 38.94	0	1556966..1557322	+	118	91773448	-	Mbur_1483	-	HxlR family transcriptional regulator
1367	 40.63	0	1557574..1558299	-	241	91773449	-	Mbur_1484	-	hypothetical protein
1368	 42.02	0	1558449..1558874	-	141	91773450	-	Mbur_1485	-	peptidylprolyl isomerase
1369	 40.72	0	1559132..1560079	+	315	91773451	-	Mbur_1486	-	hypothetical protein
1370	 41.86	0	1560076..1560591	+	171	91773452	-	Mbur_1487	-	hypothetical protein
1371	 41.39	0	1560579..1561037	+	152	91773453	-	Mbur_1488	-	hypothetical protein
1372	 38.93	0	1561034..1561480	+	148	91773454	-	Mbur_1489	-	hypothetical protein
1373	 40.22	0	1561461..1562201	+	246	91773455	-	Mbur_1490	-	hypothetical protein
1374	 41.65	0	1562373..1566149	-	1258	91773456	-	Mbur_1491	-	hypothetical protein
1375	 40.61	0	1566189..1568867	-	892	91773457	-	Mbur_1492	-	von Willebrand factor, type A
1376	 33.33	-1	1569038..1569403	+	121	91773458	-	Mbur_1493	-	hypothetical protein
1377	 48.13	+1	1569731..1571014	-	427	91773459	-	Mbur_1494	-	thiamine biosynthesis protein ThiC
1378	 42.93	0	1571447..1572373	-	308	91773460	-	Mbur_1495	-	glycosyl transferase family protein
1379	 43.80	0	1572374..1572994	-	206	91773461	-	Mbur_1496	-	transcription factor
1380	 44.38	0	1573100..1574203	-	367	91773462	-	Mbur_1497	-	condensin subunit ScpB
1381	 45.80	0	1574204..1575061	-	285	91773463	-	Mbur_1498	-	condensin subunit ScpA
1382	 45.96	0	1575058..1578582	-	1174	91773464	-	Mbur_1499	-	condensin subunit Smc
1383	 44.40	0	1578602..1579378	-	258	91773465	-	Mbur_1500	-	hypothetical protein
1384	 43.87	0	1579485..1582151	-	888	91773466	-	Mbur_1501	-	SMC-like protein
1385	 43.21	0	1582148..1583605	-	485	91773467	-	Mbur_1502	-	metallophosphoesterase
1386	 41.80	0	1583790..1584521	+	243	91773468	-	Mbur_1503	-	glucose-6-phosphate isomerase
1387	 46.38	0	1584608..1585366	+	252	91773469	-	Mbur_1504	-	hypothetical protein
1388	 47.40	+1	1585370..1586755	-	461	91773470	-	Mbur_1505	-	phosphoesterase, RecJ-like protein
1389	 42.71	0	1586776..1587276	-	166	91773471	-	Mbur_1506	-	hypothetical protein
1390	 38.52	0	1587288..1587557	+	89	91773472	-	Mbur_1507	-	hypothetical protein
1391	 39.14	0	1587797..1588192	-	131	91773473	-	Mbur_1508	-	hypothetical protein
1392	 43.53	0	1588449..1589105	+	218	91773474	-	Mbur_1509	-	hypothetical protein
1393	 43.43	0	1589135..1589461	+	108	91773475	-	Mbur_1510	-	RNAse P, Rpr2/Rpp21 subunit
1394	 42.80	0	1589466..1589708	-	80	91773476	-	Mbur_1511	-	hypothetical protein
1395	 39.17	0	1590369..1590608	+	79	91773477	-	Mbur_1512	-	hypothetical protein
1396	 42.46	0	1590659..1592038	-	459	91773478	-	Mbur_1513	-	KaiC
1397	 43.33	0	1592140..1592409	-	89	91773479	-	Mbur_1514	-	exodeoxyribonuclease VII small subunit
1398	 43.71	0	1592416..1593639	-	407	91773480	-	Mbur_1515	-	exodeoxyribonuclease VII large subunit
1399	 43.43	0	1593881..1594375	+	164	91773481	-	Mbur_1516	-	CoB--CoM heterodisulfide reductase subunit C
1400	 45.39	0	1594368..1595288	+	306	91773482	-	Mbur_1517	-	CoB--CoM heterodisulfide reductase subunit B
1401	 48.69	+1	1595846..1596802	-	318	91773483	-	Mbur_1518	-	tetrahydromethanopterin S-methyltransferase subunit H
1402	 40.79	0	1596817..1597044	-	75	91773484	-	Mbur_1519	-	tetrahydromethanopterin S-methyltransferase subunit G
1403	 47.08	+1	1597041..1597280	-	79	91773485	mtrF	Mbur_1520	-	tetrahydromethanopterin S-methyltransferase subunit F
1404	 48.07	+1	1597286..1598011	-	241	91773486	-	Mbur_1521	-	tetrahydromethanopterin S-methyltransferase subunit A
1405	 43.52	0	1598013..1598336	-	107	91773487	-	Mbur_1522	-	tetrahydromethanopterin S-methyltransferase subunit B
1406	 48.40	+1	1598333..1599142	-	269	91773488	-	Mbur_1523	-	tetrahydromethanopterin S-methyltransferase subunit C
1407	 46.94	+1	1599144..1599863	-	239	91773489	-	Mbur_1524	-	tetrahydromethanopterin S-methyltransferase subunit D
1408	 45.14	0	1599860..1600765	-	301	91773490	-	Mbur_1525	-	tetrahydromethanopterin S-methyltransferase subunit E
1409	 42.38	0	1600953..1601339	-	128	91773491	-	Mbur_1526	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.