IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1248	 48.48	+1	1443676..1444764	-	362	91773330	glpX	Mbur_1354	-	fructose 1,6-bisphosphatase II
1249	 42.88	0	1444875..1445429	-	184	91773331	-	Mbur_1355	-	hypothetical protein
1250	 45.59	0	1445652..1448540	+	962	91773332	leuS	Mbur_1356	-	leucyl-tRNA synthetase
1251	 40.23	0	1448587..1449195	-	202	91773333	-	Mbur_1357	-	hypothetical protein
1252	 37.48	0	1449438..1449944	+	168	91773334	-	Mbur_1358	-	ArsR family transcriptional regulator
1253	 41.06	0	1449944..1450732	+	262	91773335	-	Mbur_1359	-	Crp/FNR family transcriptional regulator
1254	 39.36	0	1450762..1451292	+	176	91773336	-	Mbur_1360	-	hypothetical protein
1255	 43.74	0	1451479..1452045	-	188	91773337	-	Mbur_1361	-	hypothetical protein
1256	 40.75	0	1452046..1453326	-	426	91773338	-	Mbur_1362	-	replication factor A
1257	 43.43	0	1453437..1455269	-	610	91773339	-	Mbur_1363	-	sodium/hydrogen exchanger
1258	 46.83	+1	1456880..1457635	-	251	91773340	-	Mbur_1365	-	dimethylamine corrinoid protein
1259	 37.37	-1	1457845..1458141	-	98	91773341	-	Mbur_1366	-	hypothetical protein
1260	 43.46	0	1458143..1459189	-	348	91773342	-	Mbur_1367	-	transmembrane protein MttP
1261	 47.77	+1	1459313..1459963	-	216	91773343	-	Mbur_1368	-	trimethylamine corrinoid protein
1262	 43.75	0	1462262..1463884	-	540	91773344	-	Mbur_1370	-	4Fe-4S ferredoxin, iron-sulfur binding
1263	 42.30	0	1464051..1464641	-	196	91773345	-	Mbur_1371	-	hypothetical protein
1264	 36.19	-1	1465126..1465440	+	104	91773346	-	Mbur_1372	-	hypothetical protein
1265	 42.59	0	1465518..1466381	-	287	91773347	-	Mbur_1373	-	hypothetical protein
1266	 42.13	0	1466386..1467738	-	450	91773348	-	Mbur_1374	-	replication factor A
1267	 38.74	0	1467892..1468113	+	73	91773349	-	Mbur_1375	-	histone
1268	 43.39	0	1468130..1468636	-	168	91773350	-	Mbur_1376	-	putative small multi-drug exporter
1269	 41.44	0	1469761..1470093	-	110	91773351	-	Mbur_1378	-	hypothetical protein
1270	 45.61	0	1470106..1470903	-	265	91773352	-	Mbur_1379	-	ferredoxin
1271	 43.32	0	1470900..1471490	-	196	91773353	-	Mbur_1380	-	electron transport complex, RnfABCDGE type, A subunit
1272	 43.14	0	1471492..1472103	-	203	91773354	-	Mbur_1381	-	SoxR-reducing system protein RsxE
1273	 44.50	0	1472118..1472690	-	190	91773355	-	Mbur_1382	-	electron transport complex, RnfABCDGE type, G subunit
1274	 44.30	0	1472683..1473612	-	309	91773356	-	Mbur_1383	-	NADH--ubiquinone oxidoreductase subunit RnfD
1275	 44.42	0	1473614..1474975	-	453	91773357	-	Mbur_1384	-	electron transport complex, RnfABCDGE type, C subunit
1276	 46.10	0	1474989..1476461	-	490	91773358	-	Mbur_1385	-	hypothetical protein
1277	 39.75	0	1476471..1476875	-	134	91773359	-	Mbur_1386	-	hypothetical protein
1278	 44.25	0	1476977..1478029	+	350	91773360	-	Mbur_1387	-	ApbE-like lipoprotein
1279	 40.04	0	1478078..1478629	-	183	91773361	-	Mbur_1388	-	2',5' RNA ligase
1280	 44.78	0	1478764..1479645	+	293	91773362	-	Mbur_1389	-	hypothetical protein
1281	 45.79	0	1479668..1480711	-	347	91773363	-	Mbur_1390	-	cell division protein pelota
1282	 44.83	0	1480761..1482752	-	663	91773364	-	Mbur_1391	-	hypothetical protein
1283	 44.50	0	1482903..1484075	+	390	91773365	-	Mbur_1392	-	DNA primase small subunit
1284	 43.50	0	1484065..1484772	+	235	91773366	-	Mbur_1393	-	hypothetical protein
1285	 41.58	0	1484788..1485066	+	92	91773367	rpl44e	Mbur_1394	-	50S ribosomal protein L44e
1286	 41.81	0	1485072..1485248	+	58	91773368	rps27e	Mbur_1395	-	30S ribosomal protein S27e
1287	 43.61	0	1485259..1486056	+	265	91773369	-	Mbur_1396	-	translation initiation factor IF-2 subunit alpha
1288	 42.69	0	1486063..1486233	+	56	91773370	-	Mbur_1397	-	nucleolar RNA-binding protein Nop10p
1289	 45.04	0	1486226..1487011	+	261	91773371	-	Mbur_1398	-	hypothetical protein
1290	 45.93	0	1487021..1488250	+	409	91773372	-	Mbur_1399	-	PHP-like protein
1291	 35.23	-1	1489779..1490726	-	315	91773373	-	Mbur_1401	-	hypothetical protein
1292	 32.05	-2	1490717..1490950	-	77	91773374	-	Mbur_1402	-	hypothetical protein
1293	 33.33	-1	1491266..1491778	+	170	91773375	-	Mbur_1403	-	hypothetical protein
1294	 39.37	0	1491878..1492192	-	104	91773376	-	Mbur_1404	-	hypothetical protein
1295	 38.22	0	1492281..1492505	-	74	91773377	-	Mbur_1405	-	hypothetical protein
1296	 34.06	-1	1492690..1493652	-	320	91773378	-	Mbur_1406	-	ribonuclease BN
1297	 42.56	0	1493738..1493932	+	64	91773379	-	Mbur_1407	-	hypothetical protein
1298	 42.96	0	1494668..1495477	-	269	91773380	-	Mbur_1409	-	secreted protein
1299	 43.76	0	1496227..1497147	-	306	91773381	-	Mbur_1411	-	LPPG:FO 2-phospho-L-lactate transferase
1300	 44.47	0	1497213..1498415	+	400	91773382	-	Mbur_1412	-	metal-dependent phosphohydrolase
1301	 43.80	0	1498412..1498774	+	120	91773383	-	Mbur_1413	-	hypothetical protein
1302	 46.20	0	1498777..1499328	+	183	91773384	-	Mbur_1414	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1303	 40.41	0	1499791..1500129	+	112	91773385	-	Mbur_1415	-	molybdopterin converting factor small subunit MoaD
1304	 43.65	0	1500162..1500539	+	125	91773386	-	Mbur_1416	-	camphor resistance protein CrcB
1305	 39.48	0	1500928..1501236	+	102	91773387	-	Mbur_1418	-	hypothetical protein
1306	 39.46	0	1501239..1501499	-	86	91773388	-	Mbur_1419	-	hypothetical protein
1307	 42.59	0	1501590..1502291	-	233	91773389	-	Mbur_1420	-	hypothetical protein
1308	 41.20	0	1502497..1503030	-	177	91773390	-	Mbur_1421	-	molybdopterin binding protein
1309	 46.63	+1	1503352..1503870	+	172	91773391	rpl10e	Mbur_1422	-	50S ribosomal protein L10e
1310	 45.16	0	1503902..1504510	+	202	91773392	-	Mbur_1423	-	translation initiation factor IF-2 subunit beta
1311	 43.09	0	1504560..1504805	+	81	91773393	-	Mbur_1424	-	hypothetical protein
1312	 46.12	0	1504829..1506040	+	403	91773394	-	Mbur_1425	-	radical SAM family Fe-S protein
1313	 46.81	+1	1506107..1507405	+	432	91773395	-	Mbur_1426	-	tryptophanyl-tRNA synthetase
1314	 46.96	+1	1507424..1508905	+	493	91773396	pheS	Mbur_1427	-	phenylalanyl-tRNA synthetase subunit alpha
1315	 44.74	0	1508920..1510059	-	379	91773397	-	Mbur_1428	-	hypothetical protein
1316	 42.47	0	1510063..1510620	-	185	91773398	-	Mbur_1429	-	hypothetical protein
1317	 41.61	0	1510624..1511058	-	144	91773399	-	Mbur_1430	-	GCN5-related N-acetyltransferase
1318	 43.78	0	1511061..1511864	-	267	91773400	-	Mbur_1431	-	hypothetical protein
1319	 40.74	0	1512061..1512465	+	134	91773401	-	Mbur_1432	-	hypothetical protein
1320	 43.79	0	1512615..1513628	+	337	91773402	-	Mbur_1433	-	protoporphyrin IX magnesium-chelatase
1321	 46.07	0	1515335..1515907	+	190	91773403	-	Mbur_1435	-	adenine phosphoribosyltransferase
1322	 46.69	+1	1515894..1516889	+	331	91773404	-	Mbur_1436	-	diphthamide biosynthesis protein
1323	 42.81	0	1516895..1517506	+	203	91773405	-	Mbur_1437	-	methyltransferase
1324	 43.70	0	1517581..1518294	+	237	91773406	-	Mbur_1438	-	RNA binding protein
1325	 39.86	0	1518319..1518594	+	91	91773407	-	Mbur_1439	-	DNA-directed RNA polymerase, subunit L
1326	 51.63	+2	1518674..1519837	+	387	91773408	-	Mbur_1440	-	Sep-tRNA:Cys-tRNA synthetase
1327	 29.49	-2	1520043..1520822	-	259	91773409	-	Mbur_1441	-	3-methyladenine DNA glycosylase-like protein
1328	 46.86	+1	1521024..1521230	-	68	91773410	-	Mbur_1442	-	hypothetical protein
1329	 38.62	0	1521779..1522591	+	270	91773411	-	Mbur_1443	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1330	 43.23	0	1524032..1524223	-	63	91773412	-	Mbur_1445	-	RNA-binding protein
1331	 37.79	0	1524737..1525678	+	313	91773413	-	Mbur_1446	-	transposase, IS4
1332	 42.73	0	1527031..1527711	+	226	91773414	-	Mbur_1449	-	hypothetical protein
1333	 45.90	0	1527764..1528360	-	198	91773415	-	Mbur_1450	-	hypothetical protein
1334	 42.86	0	1528488..1529642	+	384	91773416	-	Mbur_1451	-	aldo/keto reductase
1335	 40.48	0	1529789..1529956	+	55	91773417	-	Mbur_1452	-	PAS/PAC sensor signal transduction histidine kinase
1336	 43.16	0	1530004..1530237	+	77	91773418	-	Mbur_1453	-	cytochrome b5
1337	 46.49	+1	1530426..1531679	+	417	91773419	-	Mbur_1454	-	L-threonine synthase
1338	 49.54	+1	1531680..1532444	+	254	91773420	-	Mbur_1455	-	ABC transporter, ATPase subunit
1339	 47.21	+1	1532441..1533139	+	232	91773421	-	Mbur_1456	-	cobalamin synthesis protein, P47K
1340	 47.85	+1	1533143..1533769	+	208	91773422	-	Mbur_1457	-	putative Fe-S cluster protein
1341	 46.94	+1	1533766..1534272	+	168	91773423	-	Mbur_1458	-	sulfopyruvate decarboxylase subunit alpha
1342	 46.84	+1	1534269..1534838	+	189	91773424	-	Mbur_1459	-	sulfopyruvate decarboxylase subunit beta
1343	 47.12	+1	1534801..1536084	-	427	91773425	-	Mbur_1460	-	hypothetical protein
1344	 44.17	0	1536106..1538016	-	636	91773426	-	Mbur_1461	-	sodium/hydrogen exchanger
1345	 40.37	0	1538225..1539361	-	378	91773427	-	Mbur_1462	-	hypothetical protein
1346	 44.13	0	1539460..1540413	-	317	91773428	-	Mbur_1463	-	tyrosyl-tRNA synthetase
1347	 43.03	0	1540505..1541236	-	243	91773429	-	Mbur_1464	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.