IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1175	 37.79	0	1368328..1369269	+	313	91773257	-	Mbur_1279	-	transposase, IS4
1176	 42.80	0	1369759..1371078	+	439	91773258	truD	Mbur_1281	-	tRNA pseudouridine synthase D
1177	 43.99	0	1371152..1372756	-	534	91773259	-	Mbur_1282	-	CTP synthetase
1178	 39.11	0	1372776..1373450	-	224	91773260	-	Mbur_1283	-	hypothetical protein
1179	 37.70	0	1373471..1373653	-	60	91773261	-	Mbur_1284	-	hypothetical protein
1180	 42.43	0	1373796..1374740	+	314	91773262	-	Mbur_1285	-	nucleoside recognition
1181	 44.44	0	1374785..1375135	-	116	91773263	-	Mbur_1286	-	F420H2 dehydrogenase subunit O
1182	 45.74	0	1375150..1376592	-	480	91773264	-	Mbur_1287	-	F420H2 dehydrogenase subunit N
1183	 44.15	0	1376596..1378083	-	495	91773265	-	Mbur_1288	-	F420H2 dehydrogenase subunit M
1184	 45.70	0	1378083..1380080	-	665	91773266	-	Mbur_1289	-	F420H2 dehydrogenase subunit L
1185	 39.93	0	1380083..1380385	-	100	91773267	-	Mbur_1290	-	F420H2 dehydrogenase subunit K
1186	 43.38	0	1380999..1381406	-	135	91773268	-	Mbur_1292	-	F420H2 dehydrogenase subunit I
1187	 42.61	0	1381411..1382445	-	344	91773269	-	Mbur_1293	-	F420H2 dehydrogenase subunit H
1188	 44.00	0	1382451..1383575	-	374	91773270	-	Mbur_1294	-	F420H2 dehydrogenase subunit D
1189	 40.67	0	1383586..1384062	-	158	91773271	-	Mbur_1295	-	NADH dehydrogenase subunit C
1190	 45.41	0	1384072..1384626	-	184	91773272	-	Mbur_1296	-	F420H2 dehydrogenase subunit B
1191	 40.40	0	1384614..1385009	-	131	91773273	-	Mbur_1297	-	F420H2 dehydrogenase subunit A
1192	 40.04	0	1385255..1385761	-	168	91773274	-	Mbur_1298	-	hypothetical protein
1193	 43.57	0	1385782..1386201	-	139	91773275	-	Mbur_1299	-	hypothetical protein
1194	 41.98	0	1386483..1386644	+	53	91773276	-	Mbur_1300	-	4Fe-4S ferredoxin, iron-sulfur binding
1195	 46.79	+1	1386641..1387918	+	425	91773277	-	Mbur_1301	-	amine oxidase
1196	 44.11	0	1388045..1389037	+	330	91773278	cofG	Mbur_1302	-	FO synthase subunit 1
1197	 43.88	0	1389034..1390104	+	356	91773279	-	Mbur_1303	-	FO synthase subunit 2
1198	 45.94	0	1390104..1391174	+	356	91773280	-	Mbur_1304	-	FO synthase subunit 2
1199	 39.97	0	1391161..1391823	+	220	91773281	-	Mbur_1305	-	hypothetical protein
1200	 39.74	0	1391800..1392111	-	103	91773282	-	Mbur_1306	-	CutA1 divalent ion tolerance protein
1201	 43.10	0	1392429..1392602	+	57	91773283	-	Mbur_1307	-	4Fe-4S ferredoxin, iron-sulfur binding
1202	 42.83	0	1392599..1393819	+	406	91773284	-	Mbur_1308	-	geranylgeranyl reductase
1203	 42.29	0	1393869..1395308	-	479	91773285	-	Mbur_1309	-	K+ transporter Trk
1204	 42.62	0	1395327..1396661	-	444	91773286	trkA	Mbur_1310	-	potassium transporter peripheral membrane component
1205	 46.94	+1	1396781..1397971	-	396	91773287	-	Mbur_1311	-	chaperone DnaJ
1206	 46.22	0	1398038..1399900	-	620	91773288	-	Mbur_1312	-	chaperone DnaK
1207	 40.62	0	1399979..1400554	-	191	91773289	-	Mbur_1313	-	GrpE protein
1208	 43.24	0	1400706..1401119	-	137	91773290	-	Mbur_1314	-	hypothetical protein
1209	 43.94	0	1401250..1402173	+	307	91773291	-	Mbur_1315	-	hypothetical protein
1210	 44.68	0	1402170..1403147	+	325	91773292	-	Mbur_1316	-	hydantoinase/oxoprolinase
1211	 42.97	0	1403163..1403795	+	210	91773293	-	Mbur_1317	-	aspartate/glutamate/uridylate kinase
1212	 46.06	0	1403900..1404064	+	54	91773294	-	Mbur_1318	-	hypothetical protein
1213	 47.78	+1	1404074..1404343	+	89	91773295	ef1B	Mbur_1319	-	elongation factor 1-beta
1214	 45.70	0	1404769..1405698	-	309	91773296	-	Mbur_1320	-	thiamine biosynthesis protein
1215	 38.22	0	1405856..1406080	+	74	91773297	-	Mbur_1321	-	hypothetical protein
1216	 41.93	0	1406242..1406718	-	158	91773298	-	Mbur_1322	-	hypothetical protein
1217	 44.67	0	1407130..1407420	-	96	91773299	-	Mbur_1323	-	acylphosphatase
1218	 44.71	0	1407442..1409349	-	635	91773300	-	Mbur_1324	-	threonyl-tRNA synthetase
1219	 37.69	0	1409650..1409970	-	106	91773301	-	Mbur_1325	-	hypothetical protein
1220	 41.60	0	1410077..1411141	-	354	91773302	-	Mbur_1326	-	hypothetical protein
1221	 44.21	0	1411231..1413234	-	667	91773303	-	Mbur_1327	-	hypothetical protein
1222	 47.81	+1	1413337..1414704	-	455	91773304	-	Mbur_1328	-	putative oxidoreductase
1223	 48.12	+1	1414695..1415546	-	283	91773305	-	Mbur_1329	-	ferredoxin--NADP(+) reductase subunit alpha
1224	 46.10	0	1416309..1417514	-	401	91773306	-	Mbur_1330	-	S-adenosylmethionine synthetase
1225	 45.15	0	1417811..1418665	+	284	91773307	hisG	Mbur_1331	-	ATP phosphoribosyltransferase
1226	 43.99	0	1418676..1419416	+	246	91773308	-	Mbur_1332	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1227	 46.53	+1	1419443..1420018	+	191	91773309	hisB	Mbur_1333	-	imidazoleglycerol-phosphate dehydratase
1228	 44.37	0	1420057..1422159	-	700	91773310	-	Mbur_1334	-	DNA mismatch repair protein MutS-like protein
1229	 43.29	0	1422174..1423007	-	277	91773311	-	Mbur_1335	-	hypothetical protein
1230	 46.58	+1	1423004..1424143	-	379	91773312	-	Mbur_1336	-	hypothetical protein
1231	 42.93	0	1424301..1424498	-	65	91773313	-	Mbur_1337	-	hypothetical protein
1232	 40.26	0	1424502..1425656	-	384	91773314	-	Mbur_1338	-	ADP-specific phosphofructokinase
1233	 41.63	0	1425666..1427123	-	485	91773315	-	Mbur_1339	-	ADP-specific phosphofructokinase
1234	 47.26	+1	1427159..1428343	-	394	91773316	argJ	Mbur_1340	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1235	 42.15	0	1428353..1428817	-	154	91773317	-	Mbur_1341	-	CBS domain-containing protein
1236	 45.55	0	1428838..1429860	-	340	91773318	argC	Mbur_1342	-	N-acetyl-gamma-glutamyl-phosphate reductase
1237	 42.66	0	1429973..1430401	+	142	91773319	-	Mbur_1343	-	nucleoside 2-deoxyribosyltransferase
1238	 48.42	+1	1430428..1431030	-	200	91773320	-	Mbur_1344	-	hypothetical protein
1239	 45.17	0	1431050..1432291	-	413	91773321	pgk	Mbur_1345	-	phosphoglycerate kinase
1240	 46.82	+1	1432439..1433506	-	355	91773322	-	Mbur_1346	-	cobyrinic acid ac-diamide synthase
1241	 48.59	+1	1433550..1435640	-	696	91773323	-	Mbur_1347	-	Acyl-CoA synthetase
1242	 42.86	0	1435796..1436320	-	174	91773324	-	Mbur_1348	-	bifunctional deaminase-reductase-like protein
1243	 38.03	0	1437602..1438708	+	368	91773325	-	Mbur_1349	-	hypothetical protein
1244	 37.41	0	1438850..1439905	+	351	91773326	-	Mbur_1350	-	hypothetical protein
1245	 44.86	0	1439963..1440526	+	187	91773327	-	Mbur_1351	-	NADPH-dependent FMN reductase
1246	 45.44	0	1440635..1442368	+	577	91773328	-	Mbur_1352	-	Cl- channel, voltage gated
1247	 46.09	0	1442371..1443663	-	430	91773329	-	Mbur_1353	-	MiaB-like tRNA modifying enzyme
1248	 48.48	+1	1443676..1444764	-	362	91773330	glpX	Mbur_1354	-	fructose 1,6-bisphosphatase II
1249	 42.88	0	1444875..1445429	-	184	91773331	-	Mbur_1355	-	hypothetical protein
1250	 45.59	0	1445652..1448540	+	962	91773332	leuS	Mbur_1356	-	leucyl-tRNA synthetase
1251	 40.23	0	1448587..1449195	-	202	91773333	-	Mbur_1357	-	hypothetical protein
1252	 37.48	0	1449438..1449944	+	168	91773334	-	Mbur_1358	-	ArsR family transcriptional regulator
1253	 41.06	0	1449944..1450732	+	262	91773335	-	Mbur_1359	-	Crp/FNR family transcriptional regulator
1254	 39.36	0	1450762..1451292	+	176	91773336	-	Mbur_1360	-	hypothetical protein
1255	 43.74	0	1451479..1452045	-	188	91773337	-	Mbur_1361	-	hypothetical protein
1256	 40.75	0	1452046..1453326	-	426	91773338	-	Mbur_1362	-	replication factor A
1257	 43.43	0	1453437..1455269	-	610	91773339	-	Mbur_1363	-	sodium/hydrogen exchanger
1258	 46.83	+1	1456880..1457635	-	251	91773340	-	Mbur_1365	-	dimethylamine corrinoid protein
1259	 37.37	-1	1457845..1458141	-	98	91773341	-	Mbur_1366	-	hypothetical protein
1260	 43.46	0	1458143..1459189	-	348	91773342	-	Mbur_1367	-	transmembrane protein MttP
1261	 47.77	+1	1459313..1459963	-	216	91773343	-	Mbur_1368	-	trimethylamine corrinoid protein
1262	 43.75	0	1462262..1463884	-	540	91773344	-	Mbur_1370	-	4Fe-4S ferredoxin, iron-sulfur binding
1263	 42.30	0	1464051..1464641	-	196	91773345	-	Mbur_1371	-	hypothetical protein
1264	 36.19	-1	1465126..1465440	+	104	91773346	-	Mbur_1372	-	hypothetical protein
1265	 42.59	0	1465518..1466381	-	287	91773347	-	Mbur_1373	-	hypothetical protein
1266	 42.13	0	1466386..1467738	-	450	91773348	-	Mbur_1374	-	replication factor A
1267	 38.74	0	1467892..1468113	+	73	91773349	-	Mbur_1375	-	histone
1268	 43.39	0	1468130..1468636	-	168	91773350	-	Mbur_1376	-	putative small multi-drug exporter
1269	 41.44	0	1469761..1470093	-	110	91773351	-	Mbur_1378	-	hypothetical protein
1270	 45.61	0	1470106..1470903	-	265	91773352	-	Mbur_1379	-	ferredoxin
1271	 43.32	0	1470900..1471490	-	196	91773353	-	Mbur_1380	-	electron transport complex, RnfABCDGE type, A subunit
1272	 43.14	0	1471492..1472103	-	203	91773354	-	Mbur_1381	-	SoxR-reducing system protein RsxE
1273	 44.50	0	1472118..1472690	-	190	91773355	-	Mbur_1382	-	electron transport complex, RnfABCDGE type, G subunit
1274	 44.30	0	1472683..1473612	-	309	91773356	-	Mbur_1383	-	NADH--ubiquinone oxidoreductase subunit RnfD
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.