IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.89   STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1132	 43.57	0	1323570..1323950	+	126	91773214	-	Mbur_1234	-	hypothetical protein
1133	 43.30	0	1323990..1324892	+	300	91773215	-	Mbur_1235	-	polyprenyl synthetase
1134	 45.39	0	1324879..1326072	+	397	91773216	-	Mbur_1236	-	radical SAM family Fe-S protein
1135	 41.90	0	1326307..1326633	+	108	91773217	-	Mbur_1237	-	H(+)-transporting ATP synthase, subunit H
1136	 39.82	0	1326626..1328566	+	646	91773218	-	Mbur_1238	-	V-type ATP synthase subunit I
1137	 46.67	+1	1328571..1328810	+	79	91773219	-	Mbur_1239	-	H+-transporting two-sector ATPase, C subunit
1138	 39.67	0	1328861..1329412	+	183	91773220	-	Mbur_1240	-	V-type ATP synthase subunit E
1139	 39.29	0	1329420..1330493	+	357	91773221	-	Mbur_1241	-	V-type ATP synthase subunit C
1140	 38.67	0	1330493..1330792	+	99	91773222	-	Mbur_1242	-	V-type ATP synthase subunit F
1141	 46.86	+1	1330783..1332519	+	578	91773223	-	Mbur_1243	-	V-type ATP synthase subunit A
1142	 47.94	+1	1332522..1333904	+	460	91773224	-	Mbur_1244	-	V-type ATP synthase subunit B
1143	 43.00	0	1333925..1334545	+	206	91773225	-	Mbur_1245	-	V-type ATP synthase subunit D
1144	 36.82	-1	1334945..1337065	+	706	91773226	-	Mbur_1246	-	flagella protein
1145	 37.34	-1	1337458..1339281	-	607	91773227	-	Mbur_1247	-	multisensor signal transduction histidine kinase
1146	 40.42	0	1339291..1339530	-	79	91773228	-	Mbur_1248	-	hypothetical protein
1147	 39.97	0	1339694..1340281	-	195	91773229	-	Mbur_1249	-	hypothetical protein
1148	 40.15	0	1340351..1341436	-	361	91773230	-	Mbur_1250	-	MscS mechanosensitive ion channel
1149	 41.98	0	1341708..1342031	+	107	91773231	-	Mbur_1251	-	hypothetical protein
1150	 30.35	-2	1342712..1343281	+	189	91773232	-	Mbur_1252	-	hypothetical protein
1151	 40.10	0	1344630..1344821	-	63	91773233	-	Mbur_1254	-	excinuclease ABC (subunit A)
1152	 50.28	+1	1344923..1345807	+	294	91773234	-	Mbur_1255	-	heat shock protein HtpX
1153	 44.85	0	1345807..1346379	+	190	91773235	-	Mbur_1256	-	hypothetical protein
1154	 43.37	0	1346387..1346665	-	92	91773236	-	Mbur_1257	-	hypothetical protein
1155	 46.78	+1	1346662..1347360	-	232	91773237	-	Mbur_1258	-	Phage shock protein A PspA/IM30
1156	 36.74	-1	1347969..1351811	-	1280	91773238	-	Mbur_1259	-	hypothetical protein
1157	 39.13	0	1351798..1353108	-	436	91773239	-	Mbur_1260	-	metallophosphoesterase
1158	 38.94	0	1353195..1353551	-	118	91773240	-	Mbur_1261	-	hypothetical protein
1159	 44.06	0	1353995..1354516	-	173	91773241	-	Mbur_1262	-	hypothetical protein
1160	 42.95	0	1354550..1354861	-	103	91773242	-	Mbur_1263	-	hypothetical protein
1161	 41.04	0	1354912..1356597	-	561	91773243	-	Mbur_1264	-	PAS/PAC sensor signal transduction histidine kinase
1162	 39.94	0	1357094..1357789	-	231	91773244	-	Mbur_1265	-	radical SAM family Fe-S protein
1163	 37.04	-1	1357949..1358245	+	98	91773245	-	Mbur_1266	-	hypothetical protein
1164	 46.18	0	1358290..1359285	-	331	91773246	-	Mbur_1267	-	AIR synthase related protein
1165	 44.52	0	1359326..1360264	-	312	91773247	-	Mbur_1268	-	radical SAM family Fe-S protein
1166	 40.17	0	1360344..1360694	-	116	91773248	-	Mbur_1269	-	putative 6-pyruvoyl tetrahydropterin synthase
1167	 43.10	0	1360694..1361410	-	238	91773249	-	Mbur_1270	-	radical SAM family Fe-S protein
1168	 41.22	0	1361410..1361967	-	185	91773250	-	Mbur_1271	-	hypothetical protein
1169	 41.03	0	1361978..1362679	-	233	91773251	-	Mbur_1272	-	ATPase ExsB
1170	 41.55	0	1363023..1363850	-	275	91773252	-	Mbur_1273	-	PKD repeat-containing protein
1171	 42.41	0	1364105..1365085	-	326	91773253	-	Mbur_1274	-	alanine dehydrogenase
1172	 39.95	0	1365529..1365921	+	130	91773254	-	Mbur_1275	-	hypothetical protein
1173	 42.34	0	1366098..1367030	+	310	91773255	-	Mbur_1276	-	SSU ribosomal protein S6P modification protein
1174	 44.83	0	1367073..1367420	+	115	91773256	-	Mbur_1277	-	peptidyl-tRNA hydrolase
1175	 37.79	0	1368328..1369269	+	313	91773257	-	Mbur_1279	-	transposase, IS4
1176	 42.80	0	1369759..1371078	+	439	91773258	truD	Mbur_1281	-	tRNA pseudouridine synthase D
1177	 43.99	0	1371152..1372756	-	534	91773259	-	Mbur_1282	-	CTP synthetase
1178	 39.11	0	1372776..1373450	-	224	91773260	-	Mbur_1283	-	hypothetical protein
1179	 37.70	0	1373471..1373653	-	60	91773261	-	Mbur_1284	-	hypothetical protein
1180	 42.43	0	1373796..1374740	+	314	91773262	-	Mbur_1285	-	nucleoside recognition
1181	 44.44	0	1374785..1375135	-	116	91773263	-	Mbur_1286	-	F420H2 dehydrogenase subunit O
1182	 45.74	0	1375150..1376592	-	480	91773264	-	Mbur_1287	-	F420H2 dehydrogenase subunit N
1183	 44.15	0	1376596..1378083	-	495	91773265	-	Mbur_1288	-	F420H2 dehydrogenase subunit M
1184	 45.70	0	1378083..1380080	-	665	91773266	-	Mbur_1289	-	F420H2 dehydrogenase subunit L
1185	 39.93	0	1380083..1380385	-	100	91773267	-	Mbur_1290	-	F420H2 dehydrogenase subunit K
1186	 43.38	0	1380999..1381406	-	135	91773268	-	Mbur_1292	-	F420H2 dehydrogenase subunit I
1187	 42.61	0	1381411..1382445	-	344	91773269	-	Mbur_1293	-	F420H2 dehydrogenase subunit H
1188	 44.00	0	1382451..1383575	-	374	91773270	-	Mbur_1294	-	F420H2 dehydrogenase subunit D
1189	 40.67	0	1383586..1384062	-	158	91773271	-	Mbur_1295	-	NADH dehydrogenase subunit C
1190	 45.41	0	1384072..1384626	-	184	91773272	-	Mbur_1296	-	F420H2 dehydrogenase subunit B
1191	 40.40	0	1384614..1385009	-	131	91773273	-	Mbur_1297	-	F420H2 dehydrogenase subunit A
1192	 40.04	0	1385255..1385761	-	168	91773274	-	Mbur_1298	-	hypothetical protein
1193	 43.57	0	1385782..1386201	-	139	91773275	-	Mbur_1299	-	hypothetical protein
1194	 41.98	0	1386483..1386644	+	53	91773276	-	Mbur_1300	-	4Fe-4S ferredoxin, iron-sulfur binding
1195	 46.79	+1	1386641..1387918	+	425	91773277	-	Mbur_1301	-	amine oxidase
1196	 44.11	0	1388045..1389037	+	330	91773278	cofG	Mbur_1302	-	FO synthase subunit 1
1197	 43.88	0	1389034..1390104	+	356	91773279	-	Mbur_1303	-	FO synthase subunit 2
1198	 45.94	0	1390104..1391174	+	356	91773280	-	Mbur_1304	-	FO synthase subunit 2
1199	 39.97	0	1391161..1391823	+	220	91773281	-	Mbur_1305	-	hypothetical protein
1200	 39.74	0	1391800..1392111	-	103	91773282	-	Mbur_1306	-	CutA1 divalent ion tolerance protein
1201	 43.10	0	1392429..1392602	+	57	91773283	-	Mbur_1307	-	4Fe-4S ferredoxin, iron-sulfur binding
1202	 42.83	0	1392599..1393819	+	406	91773284	-	Mbur_1308	-	geranylgeranyl reductase
1203	 42.29	0	1393869..1395308	-	479	91773285	-	Mbur_1309	-	K+ transporter Trk
1204	 42.62	0	1395327..1396661	-	444	91773286	trkA	Mbur_1310	-	potassium transporter peripheral membrane component
1205	 46.94	+1	1396781..1397971	-	396	91773287	-	Mbur_1311	-	chaperone DnaJ
1206	 46.22	0	1398038..1399900	-	620	91773288	-	Mbur_1312	-	chaperone DnaK
1207	 40.62	0	1399979..1400554	-	191	91773289	-	Mbur_1313	-	GrpE protein
1208	 43.24	0	1400706..1401119	-	137	91773290	-	Mbur_1314	-	hypothetical protein
1209	 43.94	0	1401250..1402173	+	307	91773291	-	Mbur_1315	-	hypothetical protein
1210	 44.68	0	1402170..1403147	+	325	91773292	-	Mbur_1316	-	hydantoinase/oxoprolinase
1211	 42.97	0	1403163..1403795	+	210	91773293	-	Mbur_1317	-	aspartate/glutamate/uridylate kinase
1212	 46.06	0	1403900..1404064	+	54	91773294	-	Mbur_1318	-	hypothetical protein
1213	 47.78	+1	1404074..1404343	+	89	91773295	ef1B	Mbur_1319	-	elongation factor 1-beta
1214	 45.70	0	1404769..1405698	-	309	91773296	-	Mbur_1320	-	thiamine biosynthesis protein
1215	 38.22	0	1405856..1406080	+	74	91773297	-	Mbur_1321	-	hypothetical protein
1216	 41.93	0	1406242..1406718	-	158	91773298	-	Mbur_1322	-	hypothetical protein
1217	 44.67	0	1407130..1407420	-	96	91773299	-	Mbur_1323	-	acylphosphatase
1218	 44.71	0	1407442..1409349	-	635	91773300	-	Mbur_1324	-	threonyl-tRNA synthetase
1219	 37.69	0	1409650..1409970	-	106	91773301	-	Mbur_1325	-	hypothetical protein
1220	 41.60	0	1410077..1411141	-	354	91773302	-	Mbur_1326	-	hypothetical protein
1221	 44.21	0	1411231..1413234	-	667	91773303	-	Mbur_1327	-	hypothetical protein
1222	 47.81	+1	1413337..1414704	-	455	91773304	-	Mbur_1328	-	putative oxidoreductase
1223	 48.12	+1	1414695..1415546	-	283	91773305	-	Mbur_1329	-	ferredoxin--NADP(+) reductase subunit alpha
1224	 46.10	0	1416309..1417514	-	401	91773306	-	Mbur_1330	-	S-adenosylmethionine synthetase
1225	 45.15	0	1417811..1418665	+	284	91773307	hisG	Mbur_1331	-	ATP phosphoribosyltransferase
1226	 43.99	0	1418676..1419416	+	246	91773308	-	Mbur_1332	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1227	 46.53	+1	1419443..1420018	+	191	91773309	hisB	Mbur_1333	-	imidazoleglycerol-phosphate dehydratase
1228	 44.37	0	1420057..1422159	-	700	91773310	-	Mbur_1334	-	DNA mismatch repair protein MutS-like protein
1229	 43.29	0	1422174..1423007	-	277	91773311	-	Mbur_1335	-	hypothetical protein
1230	 46.58	+1	1423004..1424143	-	379	91773312	-	Mbur_1336	-	hypothetical protein
1231	 42.93	0	1424301..1424498	-	65	91773313	-	Mbur_1337	-	hypothetical protein
41.89	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.