IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1093	 45.24	0	1283485..1284030	-	181	91773175	-	Mbur_1194	-	Ham1-like protein
1094	 43.98	0	1284023..1284595	-	190	91773176	-	Mbur_1195	-	O-sialoglycoprotein endopeptidase
1095	 49.11	+1	1284595..1285602	-	335	91773177	-	Mbur_1196	-	O-sialoglycoprotein endopeptidase
1096	 44.70	0	1285719..1285982	+	87	91773178	-	Mbur_1197	-	hypothetical protein
1097	 38.72	0	1286145..1287221	-	358	91773179	-	Mbur_1198	-	hypothetical protein
1098	 37.55	0	1287607..1288152	+	181	91773180	-	Mbur_1199	-	hypothetical protein
1099	 40.14	0	1288149..1289015	+	288	91773181	-	Mbur_1200	-	hypothetical protein
1100	 43.51	0	1289012..1290946	+	644	91773182	-	Mbur_1201	-	HEAT repeat-containing protein
1101	 45.99	0	1291062..1292183	-	373	91773183	-	Mbur_1202	-	DNA topoisomerase VI subunit A
1102	 45.37	0	1292185..1294053	-	622	91773184	-	Mbur_1203	-	DNA topoisomerase VI subunit B
1103	 42.36	0	1294292..1294723	-	143	91773185	-	Mbur_1204	-	CMP/dCMP deaminase, zinc-binding
1104	 47.17	+1	1294806..1296026	-	406	91773186	-	Mbur_1205	-	peptidase U32
1105	 41.60	0	1296107..1296505	-	132	91773187	-	Mbur_1206	-	transcription activator, effector binding
1106	 41.59	0	1296696..1297034	-	112	91773188	-	Mbur_1207	-	hypothetical protein
1107	 41.98	0	1298005..1298247	-	80	91773189	-	Mbur_1209	-	hypothetical protein
1108	 31.07	-2	1298576..1299016	+	146	91773190	-	Mbur_1210	-	hypothetical protein
1109	 31.37	-2	1299086..1299289	+	67	91773191	-	Mbur_1211	-	XRE family transcriptional regulator
1110	 37.83	0	1299685..1300218	+	177	91773192	-	Mbur_1212	-	heat shock protein DnaJ-like protein
1111	 44.34	0	1300748..1303972	-	1074	91773193	-	Mbur_1213	-	HsdR family type I site-specific deoxyribonuclease
1112	 41.30	0	1303974..1305002	-	342	91773194	-	Mbur_1214	-	hypothetical protein
1113	 42.32	0	1304989..1306023	-	344	91773195	-	Mbur_1215	-	hypothetical protein
1114	 35.27	-1	1306130..1306954	-	274	91773196	-	Mbur_1216	-	hypothetical protein
1115	 29.17	-2	1306951..1307502	-	183	91773197	-	Mbur_1217	-	hypothetical protein
1116	 39.30	0	1307499..1308554	-	351	91773198	-	Mbur_1218	-	restriction modification system DNA specificity subunit
1117	 37.09	-1	1308635..1309780	-	381	91773199	-	Mbur_1219	-	hypothetical protein
1118	 45.86	0	1309777..1310175	-	132	91773200	-	Mbur_1220	-	hypothetical protein
1119	 39.74	0	1310384..1311460	-	358	91773201	-	Mbur_1221	-	filamentation induced by cAMP protein Fic
1120	 45.51	0	1311450..1313009	-	519	91773202	-	Mbur_1222	-	N-6 DNA methylase
1121	 37.50	0	1313777..1314160	+	127	91773203	-	Mbur_1223	-	hypothetical protein
1122	 47.69	+1	1314181..1314960	-	259	91773204	-	Mbur_1224	-	dihydroorotate dehydrogenase electron transfer subunit
1123	 47.73	+1	1314960..1315862	-	300	91773205	-	Mbur_1225	-	dihydroorotate dehydrogenase 1B
1124	 50.22	+1	1315886..1316815	-	309	91773206	hemC	Mbur_1226	-	porphobilinogen deaminase
1125	 46.89	+1	1316829..1318097	-	422	91773207	-	Mbur_1227	-	glutamate-1-semialdehyde aminotransferase
1126	 46.39	0	1318168..1319124	-	318	91773208	-	Mbur_1228	-	delta-aminolevulinic acid dehydratase
1127	 46.02	0	1319155..1320423	-	422	91773209	hemA	Mbur_1229	-	glutamyl-tRNA reductase
1128	 43.61	0	1320517..1321197	-	226	91773210	-	Mbur_1230	-	siroheme synthase
1129	 44.38	0	1321198..1321677	-	159	91773211	-	Mbur_1231	-	AsnC family transcriptional regulator
1130	 46.93	+1	1321667..1322122	-	151	91773212	-	Mbur_1232	-	AsnC family transcriptional regulator
1131	 47.45	+1	1322215..1323255	-	346	91773213	-	Mbur_1233	-	radical SAM family Fe-S protein
1132	 43.57	0	1323570..1323950	+	126	91773214	-	Mbur_1234	-	hypothetical protein
1133	 43.30	0	1323990..1324892	+	300	91773215	-	Mbur_1235	-	polyprenyl synthetase
1134	 45.39	0	1324879..1326072	+	397	91773216	-	Mbur_1236	-	radical SAM family Fe-S protein
1135	 41.90	0	1326307..1326633	+	108	91773217	-	Mbur_1237	-	H(+)-transporting ATP synthase, subunit H
1136	 39.82	0	1326626..1328566	+	646	91773218	-	Mbur_1238	-	V-type ATP synthase subunit I
1137	 46.67	+1	1328571..1328810	+	79	91773219	-	Mbur_1239	-	H+-transporting two-sector ATPase, C subunit
1138	 39.67	0	1328861..1329412	+	183	91773220	-	Mbur_1240	-	V-type ATP synthase subunit E
1139	 39.29	0	1329420..1330493	+	357	91773221	-	Mbur_1241	-	V-type ATP synthase subunit C
1140	 38.67	0	1330493..1330792	+	99	91773222	-	Mbur_1242	-	V-type ATP synthase subunit F
1141	 46.86	+1	1330783..1332519	+	578	91773223	-	Mbur_1243	-	V-type ATP synthase subunit A
1142	 47.94	+1	1332522..1333904	+	460	91773224	-	Mbur_1244	-	V-type ATP synthase subunit B
1143	 43.00	0	1333925..1334545	+	206	91773225	-	Mbur_1245	-	V-type ATP synthase subunit D
1144	 36.82	-1	1334945..1337065	+	706	91773226	-	Mbur_1246	-	flagella protein
1145	 37.34	-1	1337458..1339281	-	607	91773227	-	Mbur_1247	-	multisensor signal transduction histidine kinase
1146	 40.42	0	1339291..1339530	-	79	91773228	-	Mbur_1248	-	hypothetical protein
1147	 39.97	0	1339694..1340281	-	195	91773229	-	Mbur_1249	-	hypothetical protein
1148	 40.15	0	1340351..1341436	-	361	91773230	-	Mbur_1250	-	MscS mechanosensitive ion channel
1149	 41.98	0	1341708..1342031	+	107	91773231	-	Mbur_1251	-	hypothetical protein
1150	 30.35	-2	1342712..1343281	+	189	91773232	-	Mbur_1252	-	hypothetical protein
1151	 40.10	0	1344630..1344821	-	63	91773233	-	Mbur_1254	-	excinuclease ABC (subunit A)
1152	 50.28	+1	1344923..1345807	+	294	91773234	-	Mbur_1255	-	heat shock protein HtpX
1153	 44.85	0	1345807..1346379	+	190	91773235	-	Mbur_1256	-	hypothetical protein
1154	 43.37	0	1346387..1346665	-	92	91773236	-	Mbur_1257	-	hypothetical protein
1155	 46.78	+1	1346662..1347360	-	232	91773237	-	Mbur_1258	-	Phage shock protein A PspA/IM30
1156	 36.74	-1	1347969..1351811	-	1280	91773238	-	Mbur_1259	-	hypothetical protein
1157	 39.13	0	1351798..1353108	-	436	91773239	-	Mbur_1260	-	metallophosphoesterase
1158	 38.94	0	1353195..1353551	-	118	91773240	-	Mbur_1261	-	hypothetical protein
1159	 44.06	0	1353995..1354516	-	173	91773241	-	Mbur_1262	-	hypothetical protein
1160	 42.95	0	1354550..1354861	-	103	91773242	-	Mbur_1263	-	hypothetical protein
1161	 41.04	0	1354912..1356597	-	561	91773243	-	Mbur_1264	-	PAS/PAC sensor signal transduction histidine kinase
1162	 39.94	0	1357094..1357789	-	231	91773244	-	Mbur_1265	-	radical SAM family Fe-S protein
1163	 37.04	-1	1357949..1358245	+	98	91773245	-	Mbur_1266	-	hypothetical protein
1164	 46.18	0	1358290..1359285	-	331	91773246	-	Mbur_1267	-	AIR synthase related protein
1165	 44.52	0	1359326..1360264	-	312	91773247	-	Mbur_1268	-	radical SAM family Fe-S protein
1166	 40.17	0	1360344..1360694	-	116	91773248	-	Mbur_1269	-	putative 6-pyruvoyl tetrahydropterin synthase
1167	 43.10	0	1360694..1361410	-	238	91773249	-	Mbur_1270	-	radical SAM family Fe-S protein
1168	 41.22	0	1361410..1361967	-	185	91773250	-	Mbur_1271	-	hypothetical protein
1169	 41.03	0	1361978..1362679	-	233	91773251	-	Mbur_1272	-	ATPase ExsB
1170	 41.55	0	1363023..1363850	-	275	91773252	-	Mbur_1273	-	PKD repeat-containing protein
1171	 42.41	0	1364105..1365085	-	326	91773253	-	Mbur_1274	-	alanine dehydrogenase
1172	 39.95	0	1365529..1365921	+	130	91773254	-	Mbur_1275	-	hypothetical protein
1173	 42.34	0	1366098..1367030	+	310	91773255	-	Mbur_1276	-	SSU ribosomal protein S6P modification protein
1174	 44.83	0	1367073..1367420	+	115	91773256	-	Mbur_1277	-	peptidyl-tRNA hydrolase
1175	 37.79	0	1368328..1369269	+	313	91773257	-	Mbur_1279	-	transposase, IS4
1176	 42.80	0	1369759..1371078	+	439	91773258	truD	Mbur_1281	-	tRNA pseudouridine synthase D
1177	 43.99	0	1371152..1372756	-	534	91773259	-	Mbur_1282	-	CTP synthetase
1178	 39.11	0	1372776..1373450	-	224	91773260	-	Mbur_1283	-	hypothetical protein
1179	 37.70	0	1373471..1373653	-	60	91773261	-	Mbur_1284	-	hypothetical protein
1180	 42.43	0	1373796..1374740	+	314	91773262	-	Mbur_1285	-	nucleoside recognition
1181	 44.44	0	1374785..1375135	-	116	91773263	-	Mbur_1286	-	F420H2 dehydrogenase subunit O
1182	 45.74	0	1375150..1376592	-	480	91773264	-	Mbur_1287	-	F420H2 dehydrogenase subunit N
1183	 44.15	0	1376596..1378083	-	495	91773265	-	Mbur_1288	-	F420H2 dehydrogenase subunit M
1184	 45.70	0	1378083..1380080	-	665	91773266	-	Mbur_1289	-	F420H2 dehydrogenase subunit L
1185	 39.93	0	1380083..1380385	-	100	91773267	-	Mbur_1290	-	F420H2 dehydrogenase subunit K
1186	 43.38	0	1380999..1381406	-	135	91773268	-	Mbur_1292	-	F420H2 dehydrogenase subunit I
1187	 42.61	0	1381411..1382445	-	344	91773269	-	Mbur_1293	-	F420H2 dehydrogenase subunit H
1188	 44.00	0	1382451..1383575	-	374	91773270	-	Mbur_1294	-	F420H2 dehydrogenase subunit D
1189	 40.67	0	1383586..1384062	-	158	91773271	-	Mbur_1295	-	NADH dehydrogenase subunit C
1190	 45.41	0	1384072..1384626	-	184	91773272	-	Mbur_1296	-	F420H2 dehydrogenase subunit B
1191	 40.40	0	1384614..1385009	-	131	91773273	-	Mbur_1297	-	F420H2 dehydrogenase subunit A
1192	 40.04	0	1385255..1385761	-	168	91773274	-	Mbur_1298	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.