IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
978	 34.81	-1	1150271..1150744	-	157	91773060	-	Mbur_1072	-	hypothetical protein
979	 45.56	0	1150993..1152006	+	337	91773061	-	Mbur_1073	-	isocitrate dehydrogenase (NADP)
980	 37.04	-1	1152126..1153313	-	395	91773062	-	Mbur_1074	-	MscS mechanosensitive ion channel
981	 43.66	0	1153530..1154807	-	425	91773063	-	Mbur_1075	-	pyruvate carboxyltransferase
982	 44.44	0	1155163..1155666	+	167	91773064	-	Mbur_1076	-	amino acid-binding protein
983	 45.42	0	1155672..1156871	-	399	91773065	-	Mbur_1077	-	geranylgeranyl reductase
984	 45.25	0	1156906..1158189	-	427	91773066	-	Mbur_1078	-	3-phosphoshikimate 1-carboxyvinyltransferase
985	 43.43	0	1158190..1158843	-	217	91773067	thyA	Mbur_1079	-	thymidylate synthase
986	 38.40	0	1159211..1159585	+	124	91773068	-	Mbur_1080	-	hypothetical protein
987	 38.70	0	1159752..1160198	+	148	91773069	-	Mbur_1081	-	hypothetical protein
988	 47.20	+1	1160203..1161060	-	285	91773070	-	Mbur_1082	-	HtpX-2 peptidase
989	 43.92	0	1161427..1161681	-	84	91773071	-	Mbur_1083	-	hypothetical protein
990	 43.43	0	1161684..1163099	-	471	91773072	-	Mbur_1084	-	hypothetical protein
991	 40.78	0	1163504..1164376	+	290	91773073	-	Mbur_1085	-	hypothetical protein
992	 43.00	0	1164461..1164967	+	168	91773074	-	Mbur_1086	-	hypothetical protein
993	 46.29	0	1164981..1165976	+	331	91773075	-	Mbur_1087	-	homoserine dehydrogenase
994	 45.66	0	1166020..1167723	+	567	91773076	-	Mbur_1088	-	DNA ligase I, ATP-dependent (dnl1)
995	 38.29	0	1168744..1169934	+	396	91773077	-	Mbur_1089	-	cell surface protein
996	 43.08	0	1169976..1170827	+	283	91773078	-	Mbur_1090	-	methyltransferase
997	 42.35	0	1170824..1171588	+	254	91773079	-	Mbur_1091	-	cobyrinic acid a,c-diamide synthase
998	 42.76	0	1171625..1172239	+	204	91773080	-	Mbur_1092	-	hypothetical protein
999	 42.62	0	1172236..1173516	+	426	91773081	-	Mbur_1093	-	Fe3+-hydroxamate binding protein
1000	 40.91	0	1173616..1174737	+	373	91773082	-	Mbur_1094	-	ABC Fe3+-siderophore transporter, inner membrane subunit
1001	 40.81	0	1174739..1175527	+	262	91773083	-	Mbur_1095	-	ABC cobalamin/Fe3+-siderophores transporter, ATPase subunit
1002	 47.79	+1	1177539..1178783	-	414	91773084	-	Mbur_1098	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
1003	 38.25	0	1179227..1179796	+	189	91773085	-	Mbur_1099	-	hypothetical protein
1004	 45.82	0	1179980..1181284	+	434	91773086	-	Mbur_1100	-	tryptophan synthase subunit beta
1005	 42.60	0	1181345..1181959	-	204	91773087	-	Mbur_1101	-	endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
1006	 44.55	0	1182074..1184356	+	760	91773088	-	Mbur_1102	-	ski2-like helicase
1007	 46.60	+1	1184434..1185714	+	426	91773089	hisD	Mbur_1103	-	histidinol dehydrogenase
1008	 36.59	-1	1185819..1186217	+	132	91773090	-	Mbur_1104	-	hypothetical protein
1009	 50.07	+1	1186426..1187178	+	250	91773091	-	Mbur_1105	-	uroporphyrinogen-III C-methyltransferase
1010	 43.20	0	1187209..1188009	+	266	91773092	hemD	Mbur_1106	-	uroporphyrinogen-III synthase
1011	 29.59	-2	1189453..1189986	-	177	91773093	-	Mbur_1108	-	hypothetical protein
1012	 36.69	-1	1190058..1190771	-	237	91773094	-	Mbur_1109	-	hypothetical protein
1013	 31.88	-2	1191002..1191277	-	91	91773095	-	Mbur_1110	-	hypothetical protein
1014	 38.94	0	1191464..1192711	-	415	91773096	-	Mbur_1111	-	YVTN beta-propeller repeat-containing protein
1015	 37.98	0	1192947..1194152	-	401	91773097	-	Mbur_1112	-	hypothetical protein
1016	 41.82	0	1194669..1195481	+	270	91773098	-	Mbur_1113	-	ArsR family transcriptional regulator
1017	 36.81	-1	1195585..1196016	-	143	91773099	-	Mbur_1114	-	hypothetical protein
1018	 34.30	-1	1196108..1196725	-	205	91773100	-	Mbur_1115	-	hypothetical protein
1019	 37.11	-1	1198994..1200475	+	493	91773101	-	Mbur_1117	-	transposase
1020	 39.62	0	1200668..1201813	-	381	91773102	-	Mbur_1118	-	hypothetical protein
1021	 45.56	0	1202239..1202598	-	119	91773103	-	Mbur_1119	-	carboxymuconolactone decarboxylase
1022	 45.20	0	1202605..1203135	-	176	91773104	-	Mbur_1120	-	Ferritin and Dps
1023	 35.81	-1	1203460..1204185	+	241	91773105	-	Mbur_1121	-	CRISPR-associated Cas6 family protein
1024	 27.21	-2	1204231..1206108	+	625	91773106	-	Mbur_1122	-	hypothetical protein
1025	 31.48	-2	1206133..1206993	+	286	91773107	-	Mbur_1123	-	hypothetical protein
1026	 31.32	-2	1206994..1207788	+	264	91773108	-	Mbur_1124	-	hypothetical protein
1027	 27.13	-2	1207778..1210420	+	880	91773109	-	Mbur_1125	-	CRISPR-associated helicase Cas3
1028	 33.00	-1	1210526..1211125	+	199	91773110	-	Mbur_1126	-	CRISPR-associated Cas4 family protein
1029	 32.04	-2	1211168..1212169	+	333	91773111	-	Mbur_1127	-	CRISPR-associated Cas1 family protein
1030	 30.30	-2	1212171..1212434	+	87	91773112	-	Mbur_1128	-	hypothetical protein
1031	 45.86	0	1214110..1215450	+	446	91773113	-	Mbur_1130	-	tRNA CCA-pyrophosphorylase
1032	 45.95	0	1215476..1216315	-	279	91773114	-	Mbur_1131	-	8-oxoguanine DNA glycosylase-like protein
1033	 49.07	+1	1216378..1216968	-	196	91773115	-	Mbur_1132	-	indolepyruvate oxidoreductase subunit B
1034	 47.90	+1	1216965..1218770	-	601	91773116	-	Mbur_1133	-	thiamine pyrophosphate enzyme-like TPP-binding
1035	 39.94	0	1218906..1220843	-	645	91773117	-	Mbur_1134	-	hydantoinase/oxoprolinase
1036	 33.33	-1	1220889..1221347	-	152	91773118	-	Mbur_1135	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1037	 41.78	0	1221585..1221797	+	70	91773119	-	Mbur_1136	-	hypothetical protein
1038	 47.04	+1	1222356..1224245	-	629	91773120	-	Mbur_1137	-	acetyl-coenzyme A synthetase
1039	 32.67	-2	1224612..1224761	+	49	91773121	-	Mbur_1138	-	hypothetical protein
1040	 30.61	-2	1224853..1225512	-	219	91773122	-	Mbur_1139	-	hypothetical protein
1041	 39.66	0	1226641..1226988	+	115	91773123	-	Mbur_1140	-	hypothetical protein
1042	 44.66	0	1226989..1227606	+	205	91773124	-	Mbur_1141	-	4Fe-4S ferredoxin, iron-sulfur binding
1043	 47.57	+1	1227715..1230762	+	1015	91773125	-	Mbur_1142	-	FAD linked oxidase-like protein
1044	 41.34	0	1230814..1231200	-	128	91773126	-	Mbur_1143	-	hypothetical protein
1045	 39.68	0	1231623..1232252	+	209	91773127	-	Mbur_1144	-	ABC transporter, ATPase subunit
1046	 38.97	0	1232253..1233050	+	265	91773128	-	Mbur_1145	-	ABC transporter, inner membrane subunit
1047	 43.89	0	1233201..1233683	+	160	91773129	-	Mbur_1146	-	hypothetical protein
1048	 42.12	0	1233718..1234047	+	109	91773130	-	Mbur_1147	-	hypothetical protein
1049	 43.72	0	1234068..1235579	+	503	91773131	-	Mbur_1148	-	ArsR family transcriptional regulator
1050	 41.18	0	1235843..1236823	-	326	91773132	-	Mbur_1149	-	radical SAM family Fe-S protein
1051	 43.73	0	1236895..1237500	-	201	91773133	-	Mbur_1150	-	hypothetical protein
1052	 48.53	+1	1238853..1239701	+	282	91773134	-	Mbur_1153	-	TatD-related deoxyribonuclease
1053	 37.89	0	1240242..1241492	-	416	91773135	-	Mbur_1154	-	WD40-like beta propeller protein
1054	 38.89	0	1241514..1242737	-	407	91773136	-	Mbur_1155	-	periplasmic component of the Tol biopolymer transport system-like protein
1055	 38.57	0	1242753..1243478	-	241	91773137	-	Mbur_1156	-	hypothetical protein
1056	 38.00	0	1243481..1244530	-	349	91773138	-	Mbur_1157	-	hypothetical protein
1057	 46.85	+1	1245007..1247832	+	941	91773139	-	Mbur_1158	-	excinuclease ABC subunit A
1058	 45.81	0	1247880..1248464	-	194	91773140	-	Mbur_1159	-	formylmethanofuran dehydrogenase, subunit E
1059	 49.14	+1	1248474..1249814	-	446	91773141	-	Mbur_1160	-	adenylosuccinate lyase
1060	 40.53	0	1249896..1250423	+	175	91773142	-	Mbur_1161	-	hypothetical protein
1061	 29.71	-2	1250579..1251433	+	284	91773143	-	Mbur_1162	-	hypothetical protein
1062	 32.41	-2	1251430..1252191	+	253	91773144	-	Mbur_1163	-	hypothetical protein
1063	 41.55	0	1252732..1252950	-	72	91773145	-	Mbur_1164	-	hypothetical protein
1064	 38.48	0	1253113..1253520	+	135	91773146	-	Mbur_1165	-	hypothetical protein
1065	 36.15	-1	1254051..1255574	+	507	91773147	-	Mbur_1166	-	PAS/PAC sensor signal transduction histidine kinase
1066	 37.11	-1	1255720..1257201	+	493	91773148	-	Mbur_1167	-	transposase
1067	 35.90	-1	1257371..1257565	-	64	91773149	-	Mbur_1168	-	hypothetical protein
1068	 46.15	0	1257743..1258054	-	103	91773150	rps10p	Mbur_1169	-	30S ribosomal protein S10P
1069	 48.38	+1	1258086..1259354	-	422	91773151	-	Mbur_1170	-	elongation factor 1-alpha
1070	 48.24	+1	1259477..1261669	-	730	91773152	-	Mbur_1171	-	elongation factor EF-2
1071	 44.92	0	1261718..1262278	-	186	91773153	-	Mbur_1172	-	30S ribosomal protein S7P
1072	 47.32	+1	1262283..1262711	-	142	91773154	rps12P	Mbur_1173	-	30S ribosomal protein S12P
1073	 40.85	0	1262789..1263214	-	141	91773155	-	Mbur_1174	-	transcription elongation factor NusA-like protein
1074	 40.62	0	1263231..1263518	-	95	91773156	-	Mbur_1175	-	50S ribosomal protein L30e
1075	 46.94	+1	1263609..1264769	-	386	91773157	-	Mbur_1176	-	DNA-directed RNA polymerase subunit A''
1076	 46.49	+1	1264769..1267420	-	883	91773158	-	Mbur_1177	-	DNA-directed RNA polymerase subunit alpha
1077	 47.27	+1	1267426..1269240	-	604	91773159	-	Mbur_1178	-	DNA-directed RNA polymerase subunit B'
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.