IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
50	 39.51	0	63786..65372	-	528	73667609	-	Mbar_A0054	-	dolichyl-phosphate beta-D-mannosyltransferase
51	 39.29	0	66631..67821	+	396	73667610	-	Mbar_A0055	-	hypothetical protein
52	 39.33	0	68576..68842	-	88	73667611	-	Mbar_A0056	-	hypothetical protein
53	 46.00	0	69624..70223	-	199	73667612	-	Mbar_A0057	-	indolepyruvate oxidoreductase subunit B
54	 48.70	+1	70220..72022	-	600	73667613	-	Mbar_A0058	-	indolepyruvate oxidoreductase, subunit
55	 45.71	0	72388..73203	-	271	73667614	-	Mbar_A0059	-	CODH nickel-insertion accessory protein
56	 48.35	+1	73851..74516	-	221	73667615	-	Mbar_A0060	-	orotidine-5'-phosphate decarboxylase
57	 46.44	0	74535..75488	-	317	73667616	-	Mbar_A0061	-	putative deoxyhypusine synthase
58	 41.34	0	75721..76407	+	228	73667617	-	Mbar_A0062	-	ABC transporter, ATP-binding protein
59	 41.03	0	76536..76886	+	116	73667618	-	Mbar_A0063	-	transposase
60	 46.94	+1	77376..77669	-	97	73667619	-	Mbar_A0064	-	hypothetical protein
61	 36.19	-1	80478..81038	+	186	73667620	-	Mbar_A0067	-	hypothetical protein
62	 41.32	0	81485..81922	+	145	73667621	-	Mbar_A0068	-	hypothetical protein
63	 44.93	0	82489..86343	-	1284	73667622	-	Mbar_A0069	-	hypothetical protein
64	 46.65	+1	86333..87601	-	422	73667623	-	Mbar_A0070	-	phosphoesterase
65	 35.22	-1	88012..88383	-	123	73667624	-	Mbar_A0071	-	hypothetical protein
66	 42.33	0	90290..90778	-	162	73667625	-	Mbar_A0073	-	MutT/nudix family protein
67	 37.22	0	91168..91938	+	256	73667626	-	Mbar_A0074	-	hypothetical protein
68	 46.94	+1	92676..93476	-	266	73667627	-	Mbar_A0075	-	DNA-directed RNA polymerase subunit D
69	 50.92	+1	93561..93941	-	126	73667628	rps11p	Mbar_A0076	-	30S ribosomal protein S11P
70	 47.00	+1	93944..94594	-	216	73667629	rps4p	Mbar_A0077	-	30S ribosomal protein S4
71	 48.47	+1	94617..95105	-	162	73667630	rps13p	Mbar_A0078	-	30S ribosomal protein S13P
72	 37.77	0	95498..96805	+	435	73667631	-	Mbar_A0079	-	transposase
73	 42.00	0	97069..98637	-	522	73667632	-	Mbar_A0080	-	hypothetical protein
74	 43.22	0	98630..99337	-	235	73667633	-	Mbar_A0081	-	gliding motility protein
75	 48.28	+1	100178..101194	-	338	73667634	-	Mbar_A0082	-	H/ACA RNA-protein complex component Cbf5p
76	 44.01	0	101663..102205	-	180	73667635	-	Mbar_A0083	-	cytidylate kinase
77	 44.28	0	102205..102825	-	206	73667636	-	Mbar_A0084	-	integral membrane protein
78	 41.58	0	103516..103794	-	92	73667637	-	Mbar_A0085	-	hypothetical protein
79	 44.44	0	103975..104622	-	215	73667638	adk	Mbar_A0086	-	adenylate kinase
80	 46.65	+1	104707..106185	-	492	73667639	-	Mbar_A0087	-	preprotein translocase subunit SecY
81	 48.94	+1	106328..106750	-	140	73667640	rpl15p	Mbar_A0088	-	50S ribosomal protein L15P
82	 46.32	0	106761..107222	-	153	73667641	rpl30p	Mbar_A0089	-	50S ribosomal protein L30P
83	 47.85	+1	107224..107850	-	208	73667642	rps5p	Mbar_A0090	-	30S ribosomal protein S5P
84	 47.43	+1	107860..108384	-	174	73667643	rpl18p	Mbar_A0091	-	50S ribosomal protein L18P
85	 47.02	+1	108401..108853	-	150	73667644	rpl19e	Mbar_A0092	-	50S ribosomal protein L19e
86	 44.98	0	108856..109293	-	145	73667645	rpl32e	Mbar_A0093	-	50S ribosomal protein L32e
87	 42.51	0	109304..109837	-	177	73667646	rpl6p	Mbar_A0094	-	50S ribosomal protein L6P
88	 46.06	0	109855..110247	-	130	73667647	rps8p	Mbar_A0095	-	30S ribosomal protein S8P
89	 46.41	0	110258..110410	-	50	73667648	rps14P	Mbar_A0096	-	30S ribosomal protein S14P
90	 46.86	+1	110411..110920	-	169	73667649	rpl5p	Mbar_A0097	-	50S ribosomal protein L5P
91	 46.19	0	110913..111620	-	235	73667650	-	Mbar_A0098	-	30S ribosomal protein S4e
92	 48.43	+1	111634..111984	-	116	73667651	rpl24p	Mbar_A0099	-	50S ribosomal protein L24P
93	 50.38	+1	111995..112393	-	132	73667652	rpl14p	Mbar_A0100	-	50S ribosomal protein L14P
94	 44.85	0	112390..112719	-	109	73667653	rps17p	Mbar_A0101	-	30S ribosomal protein S17P
95	 43.84	0	112724..113056	-	110	73667654	-	Mbar_A0102	-	ribonuclease P protein component 1
96	 49.02	+1	113046..113249	-	67	73667655	rpmC	Mbar_A0103	-	50S ribosomal protein L29
97	 48.82	+1	113249..114184	-	311	73667656	rps3p	Mbar_A0104	-	30S ribosomal protein S3P
98	 43.20	0	114185..114640	-	151	73667657	rpl22p	Mbar_A0105	-	50S ribosomal protein L22P
99	 46.96	+1	114652..115062	-	136	73667658	rps19p	Mbar_A0106	-	30S ribosomal protein S19P
100	 50.35	+1	115078..115794	-	238	73667659	rpl2p	Mbar_A0107	-	50S ribosomal protein L2P
101	 41.37	0	115805..116053	-	82	73667660	rplW	Mbar_A0108	-	50S ribosomal protein L23
102	 52.76	+2	116050..116811	-	253	73667661	rpl4lp	Mbar_A0109	-	50S ribosomal protein L4P
103	 50.49	+1	116818..117831	-	337	73667662	rpl3p	Mbar_A0110	-	50S ribosomal protein L3P
104	 32.56	-1	120221..123718	+	1165	73667663	-	Mbar_A0111	-	hypothetical protein
105	 40.15	0	124070..125962	+	630	73667664	-	Mbar_A0112	-	hypothetical protein
106	 40.66	0	125990..126262	+	90	73667665	-	Mbar_A0113	-	hypothetical protein
107	 40.88	0	126435..127547	+	370	73667666	-	Mbar_A0114	-	hypothetical protein
108	 40.85	0	127881..128771	+	296	73667667	-	Mbar_A0115	-	hypothetical protein
109	 41.62	0	129021..130202	+	393	73667668	-	Mbar_A0116	-	hypothetical protein
110	 42.12	0	131284..132171	-	295	73667669	-	Mbar_A0118	-	hypothetical protein
111	 43.11	0	132409..132807	+	132	73667670	-	Mbar_A0119	-	hypothetical protein
112	 43.87	0	133084..134127	-	347	73667671	-	Mbar_A0120	-	cytochrome d ubiquinol oxidase, subunit II
113	 41.69	0	134130..135446	-	438	73667672	-	Mbar_A0121	-	cytochrome d ubiquinol oxidase, subunit I
114	 41.08	0	135667..136131	-	154	73667673	-	Mbar_A0122	-	ferric uptake regulation protein
115	 39.23	0	138573..139505	-	310	73667674	-	Mbar_A0123	-	hypothetical protein
116	 38.26	0	140142..140648	+	168	73667675	-	Mbar_A0124	-	demethylmenaquinone methyltransferase
117	 35.35	-1	142747..143886	+	379	73667676	-	Mbar_A0125	-	hypothetical protein
118	 33.61	-1	144726..146558	-	610	73667677	-	Mbar_A0126	-	hypothetical protein
119	 50.49	+1	147869..148381	-	170	73667678	-	Mbar_A0128	-	hypothetical protein
120	 42.86	0	148448..148762	-	104	73667679	-	Mbar_A0129	-	hypothetical protein
121	 40.78	0	149467..149775	+	102	73667680	-	Mbar_A0130	-	hypothetical protein
122	 45.57	0	150056..151036	-	326	73667681	-	Mbar_A0131	-	thiamin-monophosphate kinase
123	 45.76	0	151458..151634	+	58	73667682	-	Mbar_A0132	-	ferredoxin
124	 45.96	0	151853..152818	-	321	73667683	-	Mbar_A0133	-	nitrogen fixation protein
125	 40.11	0	153141..153494	-	117	73667684	-	Mbar_A0134	-	6-pyruvoyltetrahydropterin synthase
126	 45.82	0	153594..154370	-	258	73667685	-	Mbar_A0135	-	hypothetical protein
127	 44.21	0	154370..154930	-	186	73667686	-	Mbar_A0136	-	hypothetical protein
128	 47.70	+1	155079..155774	-	231	73667687	-	Mbar_A0137	-	succinoglycan biosynthesis regulator
129	 43.51	0	156514..157014	+	166	73667688	-	Mbar_A0138	-	hypothetical protein
130	 44.93	0	157305..157718	+	137	73667689	-	Mbar_A0139	-	hypothetical protein
131	 45.73	0	157759..158460	-	233	73667690	-	Mbar_A0140	-	putative serine/threonine protein phosphatase
132	 47.75	+1	158554..160488	-	644	73667691	-	Mbar_A0141	-	hydantoinase
133	 41.45	0	161092..161793	+	233	73667692	-	Mbar_A0142	-	hypothetical protein
134	 23.12	-2	161802..162134	+	110	73667693	-	Mbar_A0143	-	hypothetical protein
135	 36.09	-1	162281..162643	+	120	73667694	-	Mbar_A0144	-	membrane protein, permease
136	 43.51	0	162863..164602	-	579	73667695	-	Mbar_A0145	-	ATP-dependent RNA helicase
137	 41.04	0	165574..166053	-	159	73667696	-	Mbar_A0146	-	hypothetical protein
138	 40.92	0	166460..166828	-	122	73667697	-	Mbar_A0147	-	ech hydrogenase subunit F
139	 40.20	0	166846..167922	-	358	73667698	-	Mbar_A0148	-	ech hydrogenase subunit E
140	 38.01	0	167945..168286	-	113	73667699	-	Mbar_A0149	-	ech hydrogenase subunit D
141	 40.76	0	168279..168749	-	156	73667700	-	Mbar_A0150	-	ech hydrogenase subunit C
142	 39.24	0	168764..169627	-	287	73667701	-	Mbar_A0151	-	ech hydrogenase subunit B
143	 40.52	0	169624..171543	-	639	73667702	-	Mbar_A0152	-	ech hydrogenase subunit A
144	 39.40	0	172441..173412	-	323	73667703	-	Mbar_A0153	-	hypothetical protein
145	 44.79	0	174152..174535	-	127	73667704	-	Mbar_A0154	-	hypothetical protein
146	 35.90	-1	174681..174914	-	77	73667705	-	Mbar_A0155	-	hypothetical protein
147	 35.68	-1	175231..176166	+	311	73667706	-	Mbar_A0156	-	transporter
148	 42.28	0	176416..177633	-	405	73667707	-	Mbar_A0157	-	ammonium transporter
149	 45.31	0	177849..179042	-	397	73667708	-	Mbar_A0158	-	ammonium transporter
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.