IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
899	 46.37	0	1114485..1115627	+	380	73668459	-	Mbar_A0921	-	3-dehydroquinate synthase
900	 45.68	0	1115729..1116457	+	242	73668460	-	Mbar_A0922	-	3-dehydroquinate dehydratase
901	 46.14	0	1116454..1117296	+	280	73668461	-	Mbar_A0923	-	shikimate dehydrogenase
902	 42.16	0	1117293..1118810	+	505	73668462	-	Mbar_A0924	-	prephenate dehydrogenase
903	 41.89	0	1118895..1120448	+	517	73668463	-	Mbar_A0925	-	hypothetical protein
904	 38.11	0	1120563..1121357	-	264	73668464	-	Mbar_A0926	-	oligopeptide ABC transporter, ATP-binding protein
905	 40.95	0	1121360..1122304	-	314	73668465	-	Mbar_A0927	-	oligopeptide ABC transporter, ATP-binding protein
906	 43.03	0	1122304..1123128	-	274	73668466	-	Mbar_A0928	-	oligopeptide ABC transporter, permease protein
907	 42.34	0	1123131..1124129	-	332	73668467	-	Mbar_A0929	-	oligopeptide ABC transporter, permease protein
908	 41.65	0	1124153..1125919	-	588	73668468	-	Mbar_A0930	-	oligopeptide ABC transporter, solute-binding protein
909	 43.46	0	1125922..1126563	-	213	73668469	-	Mbar_A0931	-	formylmethanofuran dehydrogenase, subunit E
910	 41.92	0	1129297..1132173	+	958	73668470	-	Mbar_A0933	-	hypothetical protein
911	 49.63	+1	1132170..1132838	-	222	73668471	-	Mbar_A0934	-	triosephosphate isomerase
912	 46.90	+1	1133012..1134190	-	392	73668472	-	Mbar_A0935	-	bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase
913	 42.11	0	1134460..1135074	-	204	73668473	-	Mbar_A0936	-	endonuclease III
914	 41.55	0	1135645..1136277	-	210	73668474	-	Mbar_A0937	-	hypothetical protein
915	 37.29	0	1136505..1136681	-	58	73668475	-	Mbar_A0938	-	hypothetical protein
916	 38.56	0	1136747..1136899	-	50	73668476	-	Mbar_A0939	-	hypothetical protein
917	 45.10	0	1137210..1137362	+	50	73668477	-	Mbar_A0940	-	bacterioferritin
918	 42.80	0	1137438..1137680	+	80	73668478	-	Mbar_A0941	-	bacterioferritin
919	 43.47	0	1143794..1145302	+	502	73668479	-	Mbar_A0942	-	2-isopropylmalate synthase
920	 45.09	0	1145438..1146211	+	257	73668480	-	Mbar_A0943	-	sec-independent transport protein TatD
921	 44.08	0	1146417..1147058	+	213	73668481	-	Mbar_A0944	-	hypothetical protein
922	 45.85	0	1147436..1149409	+	657	73668482	-	Mbar_A0945	-	hypothetical protein
923	 34.35	-1	1150186..1150974	+	262	73668483	-	Mbar_A0946	-	hypothetical protein
924	 35.08	-1	1150971..1154126	+	1051	73668484	-	Mbar_A0947	-	hypothetical protein
925	 43.62	0	1154349..1154630	-	93	73668485	-	Mbar_A0948	-	hypothetical protein
926	 39.53	0	1154734..1154991	-	85	73668486	-	Mbar_A0949	-	hypothetical protein
927	 46.96	+1	1155256..1156422	-	388	73668487	-	Mbar_A0950	-	iron-sulfur binding reductase
928	 48.72	+1	1156427..1157797	-	456	73668488	-	Mbar_A0951	-	(S)-2-hydroxy-acid dehydrogenase
929	 37.93	0	1158230..1159012	-	260	73668489	-	Mbar_A0952	-	hypothetical protein
930	 33.53	-1	1159023..1159541	-	172	73668490	-	Mbar_A0953	-	hypothetical protein
931	 36.02	-1	1159795..1160277	-	160	73668491	-	Mbar_A0954	-	hypothetical protein
932	 35.53	-1	1160743..1161015	-	90	73668492	-	Mbar_A0955	-	hypothetical protein
933	 46.52	0	1162003..1163883	+	626	73668493	-	Mbar_A0956	-	archaeosine tRNA-ribosyltransferase
934	 39.92	0	1164101..1164631	+	176	73668494	-	Mbar_A0957	-	SSU ribosomal protein S18P alanine acetyltransferase
935	 45.88	0	1164615..1164893	-	92	73668495	-	Mbar_A0958	-	hypothetical protein
936	 44.21	0	1165546..1167099	-	517	73668496	-	Mbar_A0959	-	DNA primase
937	 42.93	0	1168616..1170136	+	506	73668497	-	Mbar_A0960	-	NADH oxidase
938	 45.78	0	1170323..1171318	+	331	73668498	-	Mbar_A0961	-	RNA 3'-terminal-phosphate cyclase
939	 43.75	0	1171555..1172178	-	207	73668499	-	Mbar_A0962	-	RNA 2'-phosphotransferase-like protein
940	 43.23	0	1172729..1174183	+	484	73668500	-	Mbar_A0963	-	replication factor A
941	 41.59	0	1174997..1175650	+	217	73668501	-	Mbar_A0964	-	hypothetical protein
942	 43.87	0	1175711..1176526	+	271	73668502	-	Mbar_A0965	-	hypothetical protein
943	 44.28	0	1176869..1177864	+	331	73668503	-	Mbar_A0966	-	hypothetical protein
944	 41.02	0	1178426..1179271	+	281	73668504	-	Mbar_A0967	-	hypothetical protein
945	 43.37	0	1179442..1180218	+	258	73668505	-	Mbar_A0968	-	hypothetical protein
946	 48.54	+1	1180715..1181503	-	262	73668506	-	Mbar_A0969	-	hypothetical protein
947	 40.15	0	1181846..1183018	+	390	73668507	-	Mbar_A0970	-	hypothetical protein
948	 42.67	0	1183334..1184404	+	356	73668508	-	Mbar_A0971	-	translation elongation factor
949	 42.11	0	1184450..1185007	+	185	73668509	-	Mbar_A0972	-	hypothetical protein
950	 42.51	0	1185147..1185920	-	257	73668510	-	Mbar_A0973	-	hypothetical protein
951	 41.25	0	1186182..1186661	-	159	73668511	-	Mbar_A0974	-	hypothetical protein
952	 45.63	0	1186735..1187295	-	186	73668512	-	Mbar_A0975	-	hypothetical protein
953	 42.97	0	1187952..1189196	-	414	73668513	cdc6	Mbar_A0976	-	cell division control protein 6
954	 43.86	0	1191362..1192549	+	395	73668514	-	Mbar_A0977	-	L-tyrosine decarboxylase
955	 43.74	0	1193106..1194200	+	364	73668515	-	Mbar_A0978	-	hypothetical protein
956	 43.50	0	1194667..1196220	+	517	73668516	-	Mbar_A0979	-	pheromone shutdown protein
957	 45.64	0	1197154..1198047	-	297	73668517	-	Mbar_A0980	-	tetrahydromethanopterin formyltransferase
958	 39.25	0	1200106..1200561	-	151	73668518	-	Mbar_A0982	-	chemoreceptor glutamine deamidase CheD
959	 35.42	-1	1201353..1202261	-	302	73668519	-	Mbar_A0983	-	chemotaxis protein methyltransferase
960	 39.29	0	1202322..1204118	-	598	73668520	-	Mbar_A0984	-	chemotaxis sensor histidine kinase
961	 43.74	0	1204575..1205669	-	364	73668521	-	Mbar_A0985	-	chemotaxis protein-glutamate methylesterase
962	 39.07	0	1205935..1206300	-	121	73668522	-	Mbar_A0986	-	chemotaxis response regulator
963	 36.27	-1	1207613..1207987	+	124	73668523	-	Mbar_A0988	-	response regulator receiver
964	 39.66	0	1208339..1210408	+	689	73668524	-	Mbar_A0989	-	methyl-accepting chemotaxis protein
965	 42.91	0	1210437..1210958	+	173	73668525	-	Mbar_A0990	-	CheW protein
966	 41.45	0	1212434..1212901	+	155	73668526	-	Mbar_A0992	-	iron dependent repressor
967	 42.80	0	1213217..1214188	+	323	73668527	-	Mbar_A0993	-	zinc ABC transporter, zinc-binding protein
968	 45.36	0	1214482..1215246	+	254	73668528	-	Mbar_A0995	-	zinc ABC transporter, ATP-binding protein
969	 43.39	0	1215301..1216125	+	274	73668529	-	Mbar_A0996	-	zinc ABC transporter, permease protein
970	 39.04	0	1216598..1217053	+	151	73668530	-	Mbar_A0997	-	hypothetical protein
971	 39.57	0	1218450..1219571	-	373	73668531	-	Mbar_A0998	-	iron ABC transporter, solute-binding protein
972	 48.48	+1	1220851..1221741	-	296	73668532	-	Mbar_A0999	-	pyruvate ferredoxin oxidoreductase, beta subunit
973	 45.08	0	1221738..1222946	-	402	73668533	-	Mbar_A1000	-	pyruvate ferredoxin oxidoreductase, alpha subunit
974	 40.28	0	1222946..1223233	-	95	73668534	-	Mbar_A1001	-	pyruvate ferredoxin oxidoreductase, delta subunit
975	 47.18	+1	1223230..1223778	-	182	73668535	-	Mbar_A1002	-	pyruvate ferredoxin oxidoreductase subunit gamma
976	 44.75	0	1224416..1225387	-	323	73668536	-	Mbar_A1003	-	hypothetical protein
977	 42.83	0	1225843..1226400	-	185	73668537	-	Mbar_A1004	-	signal sequence peptidase
978	 45.78	0	1227072..1229096	+	674	73668538	-	Mbar_A1005	-	DNA polymerase II small subunit
979	 45.66	0	1229273..1230310	+	345	73668539	-	Mbar_A1006	-	tRNA-modifying enzyme
980	 46.71	+1	1231238..1232485	+	415	73668540	-	Mbar_A1007	-	peptide chain release factor 1
981	 46.37	0	1232780..1234489	+	569	73668541	argS	Mbar_A1008	-	arginyl-tRNA synthetase
982	 41.85	0	1234797..1235207	+	136	73668542	-	Mbar_A1009	-	hypothetical protein
983	 36.51	-1	1235224..1235664	-	146	73668543	-	Mbar_A1010	-	transposase
984	 35.00	-1	1235702..1235881	-	59	73668544	-	Mbar_A1011	-	transposase
985	 36.57	-1	1235887..1236318	-	143	73668545	-	Mbar_A1012	-	transposase
986	 43.74	0	1236615..1237325	+	236	73668546	-	Mbar_A1013	-	hypothetical protein
987	 43.41	0	1237407..1240304	-	965	73668547	-	Mbar_A1014	-	type I restriction-modification system restriction subunit
988	 36.05	-1	1240418..1241851	-	477	73668548	-	Mbar_A1015	-	hypothetical protein
989	 45.23	0	1241848..1243890	-	680	73668549	-	Mbar_A1016	-	type I restriction-modification system methyltransferase subunit
990	 33.33	-1	1244451..1244684	-	77	73668550	-	Mbar_A1017	-	transposase
991	 34.59	-1	1244730..1245842	+	370	73668551	-	Mbar_A1018	-	transposase
992	 39.77	0	1245967..1246479	+	170	73668552	-	Mbar_A1019	-	hypothetical protein
993	 38.67	0	1246668..1246892	+	74	73668553	-	Mbar_A1020	-	hypothetical protein
994	 46.03	0	1246920..1247171	+	83	73668554	-	Mbar_A1021	-	RelE protein
995	 43.65	0	1247397..1248443	+	348	73668555	-	Mbar_A1022	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
996	 42.51	0	1248570..1249604	+	344	73668556	-	Mbar_A1023	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
997	 41.52	0	1249870..1250040	-	56	73668557	-	Mbar_A1024	-	hypothetical protein
998	 44.93	0	1251084..1251290	+	68	73668558	-	Mbar_A1025	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.