IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
860	 42.87	0	1060962..1062125	+	387	73668420	-	Mbar_A0881	-	coenzyme F420 hydrogenase, beta subunit
861	 44.68	0	1062456..1062737	+	93	73668421	gatC	Mbar_A0882	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
862	 45.94	0	1062750..1064177	+	475	73668422	-	Mbar_A0883	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
863	 44.29	0	1064178..1065665	+	495	73668423	gatB	Mbar_A0884	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
864	 43.57	0	1065961..1066761	-	266	73668424	-	Mbar_A0885	-	carbon-nitrogen hydrolase
865	 45.18	0	1067939..1068850	+	303	73668425	-	Mbar_A0886	-	hypothetical protein
866	 40.49	0	1069044..1070147	-	367	73668426	-	Mbar_A0887	-	hypothetical protein
867	 37.02	0	1070335..1071255	+	306	73668427	-	Mbar_A0888	-	5-methylcytosine-specific restriction enzyme
868	 47.45	+1	1071814..1072677	+	287	73668428	-	Mbar_A0889	-	HtpX-2 peptidase
869	 42.97	0	1073157..1073810	+	217	73668429	thyA	Mbar_A0890	-	thymidylate synthase
870	 44.59	0	1073929..1075260	+	443	73668430	-	Mbar_A0891	-	3-phosphoshikimate 1-carboxyvinyltransferase
871	 35.17	-1	1075605..1076585	+	326	73668431	-	Mbar_A0892	-	hypothetical protein
872	 52.48	+2	1076826..1078538	-	570	73668432	-	Mbar_A0893	-	methyl-coenzyme M reductase, alpha subunit
873	 50.33	+1	1078549..1079295	-	248	73668433	-	Mbar_A0894	-	methyl-coenzyme M reductase, gamma subunit
874	 47.02	+1	1079297..1079917	-	206	73668434	-	Mbar_A0895	-	methyl coenzyme M reductase, subunit D
875	 46.51	0	1079924..1080439	-	171	73668435	-	Mbar_A0896	-	methyl coenzyme M reductase, subunit C
876	 49.89	+1	1080464..1081768	-	434	73668436	-	Mbar_A0897	-	methyl-coenzyme M reductase, beta subunit
877	 41.59	0	1082187..1083422	+	411	73668437	-	Mbar_A0898	-	hypothetical protein
878	 45.19	0	1083806..1087246	-	1146	73668438	-	Mbar_A0899	-	DNA polymerase II large subunit
879	 39.74	0	1087279..1087512	-	77	73668439	-	Mbar_A0900	-	hypothetical protein
880	 48.73	+1	1087888..1088991	-	367	73668440	-	Mbar_A0901	-	translation factor SUA5
881	 47.86	+1	1089041..1090327	-	428	73668441	rbcL	Mbar_A0902	-	ribulose bisophosphate carboxylase
882	 41.87	0	1091079..1092191	-	370	73668442	-	Mbar_A0903	-	cation transporter
883	 40.63	0	1092900..1094009	-	369	73668443	-	Mbar_A0904	-	cation transporter
884	 41.08	0	1095457..1096566	-	369	73668444	-	Mbar_A0905	-	hypothetical protein
885	 42.97	0	1097933..1098430	-	165	73668445	-	Mbar_A0906	-	hypothetical protein
886	 41.10	0	1098485..1099012	-	175	73668446	-	Mbar_A0907	-	putative heat shock protein
887	 46.14	0	1099166..1101430	-	754	73668447	-	Mbar_A0908	-	cell division control protein 48
888	 44.25	0	1101427..1102113	-	228	73668448	-	Mbar_A0909	-	ArsR family transcriptional regulator
889	 35.44	-1	1102482..1103147	-	221	73668449	-	Mbar_A0910	-	hypothetical protein
890	 44.75	0	1103476..1103913	-	145	73668450	-	Mbar_A0911	-	hypothetical protein
891	 42.67	0	1104764..1105438	-	224	73668451	-	Mbar_A0913	-	xanthine-guanine phosphoribosyltransferase
892	 38.35	0	1105864..1106640	+	258	73668452	-	Mbar_A0914	-	hypothetical protein
893	 34.69	-1	1106628..1107584	-	318	73668453	-	Mbar_A0915	-	hypothetical protein
894	 40.60	0	1108622..1109488	+	288	73668454	-	Mbar_A0916	-	hypothetical protein
895	 43.75	0	1109598..1109789	-	63	73668455	-	Mbar_A0917	-	hypothetical protein
896	 47.75	+1	1110653..1111984	+	443	73668456	-	Mbar_A0918	-	signal recognition particle protein Srp54
897	 47.19	+1	1112593..1113162	-	189	73668457	-	Mbar_A0919	-	GMP synthase subunit A
898	 49.12	+1	1113590..1114387	+	265	73668458	-	Mbar_A0920	-	fructose-bisphosphate aldolase
899	 46.37	0	1114485..1115627	+	380	73668459	-	Mbar_A0921	-	3-dehydroquinate synthase
900	 45.68	0	1115729..1116457	+	242	73668460	-	Mbar_A0922	-	3-dehydroquinate dehydratase
901	 46.14	0	1116454..1117296	+	280	73668461	-	Mbar_A0923	-	shikimate dehydrogenase
902	 42.16	0	1117293..1118810	+	505	73668462	-	Mbar_A0924	-	prephenate dehydrogenase
903	 41.89	0	1118895..1120448	+	517	73668463	-	Mbar_A0925	-	hypothetical protein
904	 38.11	0	1120563..1121357	-	264	73668464	-	Mbar_A0926	-	oligopeptide ABC transporter, ATP-binding protein
905	 40.95	0	1121360..1122304	-	314	73668465	-	Mbar_A0927	-	oligopeptide ABC transporter, ATP-binding protein
906	 43.03	0	1122304..1123128	-	274	73668466	-	Mbar_A0928	-	oligopeptide ABC transporter, permease protein
907	 42.34	0	1123131..1124129	-	332	73668467	-	Mbar_A0929	-	oligopeptide ABC transporter, permease protein
908	 41.65	0	1124153..1125919	-	588	73668468	-	Mbar_A0930	-	oligopeptide ABC transporter, solute-binding protein
909	 43.46	0	1125922..1126563	-	213	73668469	-	Mbar_A0931	-	formylmethanofuran dehydrogenase, subunit E
910	 41.92	0	1129297..1132173	+	958	73668470	-	Mbar_A0933	-	hypothetical protein
911	 49.63	+1	1132170..1132838	-	222	73668471	-	Mbar_A0934	-	triosephosphate isomerase
912	 46.90	+1	1133012..1134190	-	392	73668472	-	Mbar_A0935	-	bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase
913	 42.11	0	1134460..1135074	-	204	73668473	-	Mbar_A0936	-	endonuclease III
914	 41.55	0	1135645..1136277	-	210	73668474	-	Mbar_A0937	-	hypothetical protein
915	 37.29	0	1136505..1136681	-	58	73668475	-	Mbar_A0938	-	hypothetical protein
916	 38.56	0	1136747..1136899	-	50	73668476	-	Mbar_A0939	-	hypothetical protein
917	 45.10	0	1137210..1137362	+	50	73668477	-	Mbar_A0940	-	bacterioferritin
918	 42.80	0	1137438..1137680	+	80	73668478	-	Mbar_A0941	-	bacterioferritin
919	 43.47	0	1143794..1145302	+	502	73668479	-	Mbar_A0942	-	2-isopropylmalate synthase
920	 45.09	0	1145438..1146211	+	257	73668480	-	Mbar_A0943	-	sec-independent transport protein TatD
921	 44.08	0	1146417..1147058	+	213	73668481	-	Mbar_A0944	-	hypothetical protein
922	 45.85	0	1147436..1149409	+	657	73668482	-	Mbar_A0945	-	hypothetical protein
923	 34.35	-1	1150186..1150974	+	262	73668483	-	Mbar_A0946	-	hypothetical protein
924	 35.08	-1	1150971..1154126	+	1051	73668484	-	Mbar_A0947	-	hypothetical protein
925	 43.62	0	1154349..1154630	-	93	73668485	-	Mbar_A0948	-	hypothetical protein
926	 39.53	0	1154734..1154991	-	85	73668486	-	Mbar_A0949	-	hypothetical protein
927	 46.96	+1	1155256..1156422	-	388	73668487	-	Mbar_A0950	-	iron-sulfur binding reductase
928	 48.72	+1	1156427..1157797	-	456	73668488	-	Mbar_A0951	-	(S)-2-hydroxy-acid dehydrogenase
929	 37.93	0	1158230..1159012	-	260	73668489	-	Mbar_A0952	-	hypothetical protein
930	 33.53	-1	1159023..1159541	-	172	73668490	-	Mbar_A0953	-	hypothetical protein
931	 36.02	-1	1159795..1160277	-	160	73668491	-	Mbar_A0954	-	hypothetical protein
932	 35.53	-1	1160743..1161015	-	90	73668492	-	Mbar_A0955	-	hypothetical protein
933	 46.52	0	1162003..1163883	+	626	73668493	-	Mbar_A0956	-	archaeosine tRNA-ribosyltransferase
934	 39.92	0	1164101..1164631	+	176	73668494	-	Mbar_A0957	-	SSU ribosomal protein S18P alanine acetyltransferase
935	 45.88	0	1164615..1164893	-	92	73668495	-	Mbar_A0958	-	hypothetical protein
936	 44.21	0	1165546..1167099	-	517	73668496	-	Mbar_A0959	-	DNA primase
937	 42.93	0	1168616..1170136	+	506	73668497	-	Mbar_A0960	-	NADH oxidase
938	 45.78	0	1170323..1171318	+	331	73668498	-	Mbar_A0961	-	RNA 3'-terminal-phosphate cyclase
939	 43.75	0	1171555..1172178	-	207	73668499	-	Mbar_A0962	-	RNA 2'-phosphotransferase-like protein
940	 43.23	0	1172729..1174183	+	484	73668500	-	Mbar_A0963	-	replication factor A
941	 41.59	0	1174997..1175650	+	217	73668501	-	Mbar_A0964	-	hypothetical protein
942	 43.87	0	1175711..1176526	+	271	73668502	-	Mbar_A0965	-	hypothetical protein
943	 44.28	0	1176869..1177864	+	331	73668503	-	Mbar_A0966	-	hypothetical protein
944	 41.02	0	1178426..1179271	+	281	73668504	-	Mbar_A0967	-	hypothetical protein
945	 43.37	0	1179442..1180218	+	258	73668505	-	Mbar_A0968	-	hypothetical protein
946	 48.54	+1	1180715..1181503	-	262	73668506	-	Mbar_A0969	-	hypothetical protein
947	 40.15	0	1181846..1183018	+	390	73668507	-	Mbar_A0970	-	hypothetical protein
948	 42.67	0	1183334..1184404	+	356	73668508	-	Mbar_A0971	-	translation elongation factor
949	 42.11	0	1184450..1185007	+	185	73668509	-	Mbar_A0972	-	hypothetical protein
950	 42.51	0	1185147..1185920	-	257	73668510	-	Mbar_A0973	-	hypothetical protein
951	 41.25	0	1186182..1186661	-	159	73668511	-	Mbar_A0974	-	hypothetical protein
952	 45.63	0	1186735..1187295	-	186	73668512	-	Mbar_A0975	-	hypothetical protein
953	 42.97	0	1187952..1189196	-	414	73668513	cdc6	Mbar_A0976	-	cell division control protein 6
954	 43.86	0	1191362..1192549	+	395	73668514	-	Mbar_A0977	-	L-tyrosine decarboxylase
955	 43.74	0	1193106..1194200	+	364	73668515	-	Mbar_A0978	-	hypothetical protein
956	 43.50	0	1194667..1196220	+	517	73668516	-	Mbar_A0979	-	pheromone shutdown protein
957	 45.64	0	1197154..1198047	-	297	73668517	-	Mbar_A0980	-	tetrahydromethanopterin formyltransferase
958	 39.25	0	1200106..1200561	-	151	73668518	-	Mbar_A0982	-	chemoreceptor glutamine deamidase CheD
959	 35.42	-1	1201353..1202261	-	302	73668519	-	Mbar_A0983	-	chemotaxis protein methyltransferase
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.