version 1.0
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408 3606 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 40 35.10 -1 53358..53696 + 112 73667599 - Mbar_A0043 - hypothetical protein 41 33.86 -1 53809..53997 - 62 73667600 - Mbar_A0044 - transposase 42 36.90 -1 53994..54329 - 111 73667601 - Mbar_A0045 - hypothetical protein 43 31.90 -2 54551..55108 - 185 73667602 - Mbar_A0046 - hypothetical protein 44 29.26 -2 55508..56194 - 228 73667603 - Mbar_A0047 - transposase 45 32.70 -1 57944..58420 - 158 73667604 - Mbar_A0049 - transposase 46 30.66 -2 58755..59837 - 360 73667605 - Mbar_A0050 - glycosyl transferase 47 31.00 -2 59834..61033 - 399 73667606 - Mbar_A0051 - hypothetical protein 48 35.27 -1 61030..62115 - 361 73667607 - Mbar_A0052 - UDP-N-acetylglucosamine 2-epimerase 49 34.52 -1 62118..63209 - 363 73667608 - Mbar_A0053 - hypothetical protein 50 39.51 0 63786..65372 - 528 73667609 - Mbar_A0054 - dolichyl-phosphate beta-D-mannosyltransferase 51 39.29 0 66631..67821 + 396 73667610 - Mbar_A0055 - hypothetical protein 52 39.33 0 68576..68842 - 88 73667611 - Mbar_A0056 - hypothetical protein 53 46.00 0 69624..70223 - 199 73667612 - Mbar_A0057 - indolepyruvate oxidoreductase subunit B 54 48.70 +1 70220..72022 - 600 73667613 - Mbar_A0058 - indolepyruvate oxidoreductase, subunit 55 45.71 0 72388..73203 - 271 73667614 - Mbar_A0059 - CODH nickel-insertion accessory protein 56 48.35 +1 73851..74516 - 221 73667615 - Mbar_A0060 - orotidine-5'-phosphate decarboxylase 57 46.44 0 74535..75488 - 317 73667616 - Mbar_A0061 - putative deoxyhypusine synthase 58 41.34 0 75721..76407 + 228 73667617 - Mbar_A0062 - ABC transporter, ATP-binding protein 59 41.03 0 76536..76886 + 116 73667618 - Mbar_A0063 - transposase 60 46.94 +1 77376..77669 - 97 73667619 - Mbar_A0064 - hypothetical protein 61 36.19 -1 80478..81038 + 186 73667620 - Mbar_A0067 - hypothetical protein 62 41.32 0 81485..81922 + 145 73667621 - Mbar_A0068 - hypothetical protein 63 44.93 0 82489..86343 - 1284 73667622 - Mbar_A0069 - hypothetical protein 64 46.65 +1 86333..87601 - 422 73667623 - Mbar_A0070 - phosphoesterase 65 35.22 -1 88012..88383 - 123 73667624 - Mbar_A0071 - hypothetical protein 66 42.33 0 90290..90778 - 162 73667625 - Mbar_A0073 - MutT/nudix family protein 67 37.22 0 91168..91938 + 256 73667626 - Mbar_A0074 - hypothetical protein 68 46.94 +1 92676..93476 - 266 73667627 - Mbar_A0075 - DNA-directed RNA polymerase subunit D 69 50.92 +1 93561..93941 - 126 73667628 rps11p Mbar_A0076 - 30S ribosomal protein S11P 70 47.00 +1 93944..94594 - 216 73667629 rps4p Mbar_A0077 - 30S ribosomal protein S4 71 48.47 +1 94617..95105 - 162 73667630 rps13p Mbar_A0078 - 30S ribosomal protein S13P 72 37.77 0 95498..96805 + 435 73667631 - Mbar_A0079 - transposase 73 42.00 0 97069..98637 - 522 73667632 - Mbar_A0080 - hypothetical protein 74 43.22 0 98630..99337 - 235 73667633 - Mbar_A0081 - gliding motility protein 75 48.28 +1 100178..101194 - 338 73667634 - Mbar_A0082 - H/ACA RNA-protein complex component Cbf5p 76 44.01 0 101663..102205 - 180 73667635 - Mbar_A0083 - cytidylate kinase 77 44.28 0 102205..102825 - 206 73667636 - Mbar_A0084 - integral membrane protein 78 41.58 0 103516..103794 - 92 73667637 - Mbar_A0085 - hypothetical protein 79 44.44 0 103975..104622 - 215 73667638 adk Mbar_A0086 - adenylate kinase 80 46.65 +1 104707..106185 - 492 73667639 - Mbar_A0087 - preprotein translocase subunit SecY 81 48.94 +1 106328..106750 - 140 73667640 rpl15p Mbar_A0088 - 50S ribosomal protein L15P 82 46.32 0 106761..107222 - 153 73667641 rpl30p Mbar_A0089 - 50S ribosomal protein L30P 83 47.85 +1 107224..107850 - 208 73667642 rps5p Mbar_A0090 - 30S ribosomal protein S5P 84 47.43 +1 107860..108384 - 174 73667643 rpl18p Mbar_A0091 - 50S ribosomal protein L18P 85 47.02 +1 108401..108853 - 150 73667644 rpl19e Mbar_A0092 - 50S ribosomal protein L19e 86 44.98 0 108856..109293 - 145 73667645 rpl32e Mbar_A0093 - 50S ribosomal protein L32e 87 42.51 0 109304..109837 - 177 73667646 rpl6p Mbar_A0094 - 50S ribosomal protein L6P 88 46.06 0 109855..110247 - 130 73667647 rps8p Mbar_A0095 - 30S ribosomal protein S8P 89 46.41 0 110258..110410 - 50 73667648 rps14P Mbar_A0096 - 30S ribosomal protein S14P 90 46.86 +1 110411..110920 - 169 73667649 rpl5p Mbar_A0097 - 50S ribosomal protein L5P 91 46.19 0 110913..111620 - 235 73667650 - Mbar_A0098 - 30S ribosomal protein S4e 92 48.43 +1 111634..111984 - 116 73667651 rpl24p Mbar_A0099 - 50S ribosomal protein L24P 93 50.38 +1 111995..112393 - 132 73667652 rpl14p Mbar_A0100 - 50S ribosomal protein L14P 94 44.85 0 112390..112719 - 109 73667653 rps17p Mbar_A0101 - 30S ribosomal protein S17P 95 43.84 0 112724..113056 - 110 73667654 - Mbar_A0102 - ribonuclease P protein component 1 96 49.02 +1 113046..113249 - 67 73667655 rpmC Mbar_A0103 - 50S ribosomal protein L29 97 48.82 +1 113249..114184 - 311 73667656 rps3p Mbar_A0104 - 30S ribosomal protein S3P 98 43.20 0 114185..114640 - 151 73667657 rpl22p Mbar_A0105 - 50S ribosomal protein L22P 99 46.96 +1 114652..115062 - 136 73667658 rps19p Mbar_A0106 - 30S ribosomal protein S19P 100 50.35 +1 115078..115794 - 238 73667659 rpl2p Mbar_A0107 - 50S ribosomal protein L2P 101 41.37 0 115805..116053 - 82 73667660 rplW Mbar_A0108 - 50S ribosomal protein L23 102 52.76 +2 116050..116811 - 253 73667661 rpl4lp Mbar_A0109 - 50S ribosomal protein L4P 103 50.49 +1 116818..117831 - 337 73667662 rpl3p Mbar_A0110 - 50S ribosomal protein L3P 104 32.56 -1 120221..123718 + 1165 73667663 - Mbar_A0111 - hypothetical protein 105 40.15 0 124070..125962 + 630 73667664 - Mbar_A0112 - hypothetical protein 106 40.66 0 125990..126262 + 90 73667665 - Mbar_A0113 - hypothetical protein 107 40.88 0 126435..127547 + 370 73667666 - Mbar_A0114 - hypothetical protein 108 40.85 0 127881..128771 + 296 73667667 - Mbar_A0115 - hypothetical protein 109 41.62 0 129021..130202 + 393 73667668 - Mbar_A0116 - hypothetical protein 110 42.12 0 131284..132171 - 295 73667669 - Mbar_A0118 - hypothetical protein 111 43.11 0 132409..132807 + 132 73667670 - Mbar_A0119 - hypothetical protein 112 43.87 0 133084..134127 - 347 73667671 - Mbar_A0120 - cytochrome d ubiquinol oxidase, subunit II 113 41.69 0 134130..135446 - 438 73667672 - Mbar_A0121 - cytochrome d ubiquinol oxidase, subunit I 114 41.08 0 135667..136131 - 154 73667673 - Mbar_A0122 - ferric uptake regulation protein 115 39.23 0 138573..139505 - 310 73667674 - Mbar_A0123 - hypothetical protein 116 38.26 0 140142..140648 + 168 73667675 - Mbar_A0124 - demethylmenaquinone methyltransferase 117 35.35 -1 142747..143886 + 379 73667676 - Mbar_A0125 - hypothetical protein 118 33.61 -1 144726..146558 - 610 73667677 - Mbar_A0126 - hypothetical protein 119 50.49 +1 147869..148381 - 170 73667678 - Mbar_A0128 - hypothetical protein 120 42.86 0 148448..148762 - 104 73667679 - Mbar_A0129 - hypothetical protein 121 40.78 0 149467..149775 + 102 73667680 - Mbar_A0130 - hypothetical protein 122 45.57 0 150056..151036 - 326 73667681 - Mbar_A0131 - thiamin-monophosphate kinase 123 45.76 0 151458..151634 + 58 73667682 - Mbar_A0132 - ferredoxin 124 45.96 0 151853..152818 - 321 73667683 - Mbar_A0133 - nitrogen fixation protein 125 40.11 0 153141..153494 - 117 73667684 - Mbar_A0134 - 6-pyruvoyltetrahydropterin synthase 126 45.82 0 153594..154370 - 258 73667685 - Mbar_A0135 - hypothetical protein 127 44.21 0 154370..154930 - 186 73667686 - Mbar_A0136 - hypothetical protein 128 47.70 +1 155079..155774 - 231 73667687 - Mbar_A0137 - succinoglycan biosynthesis regulator 129 43.51 0 156514..157014 + 166 73667688 - Mbar_A0138 - hypothetical protein 130 44.93 0 157305..157718 + 137 73667689 - Mbar_A0139 - hypothetical protein 131 45.73 0 157759..158460 - 233 73667690 - Mbar_A0140 - putative serine/threonine protein phosphatase 132 47.75 +1 158554..160488 - 644 73667691 - Mbar_A0141 - hydantoinase 133 41.45 0 161092..161793 + 233 73667692 - Mbar_A0142 - hypothetical protein 134 23.12 -2 161802..162134 + 110 73667693 - Mbar_A0143 - hypothetical protein 135 36.09 -1 162281..162643 + 120 73667694 - Mbar_A0144 - membrane protein, permease 136 43.51 0 162863..164602 - 579 73667695 - Mbar_A0145 - ATP-dependent RNA helicase 137 41.04 0 165574..166053 - 159 73667696 - Mbar_A0146 - hypothetical protein 138 40.92 0 166460..166828 - 122 73667697 - Mbar_A0147 - ech hydrogenase subunit F 139 40.20 0 166846..167922 - 358 73667698 - Mbar_A0148 - ech hydrogenase subunit E 41.74 MEAN 4.78 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.