IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
830	 43.21	0	1028095..1029117	-	340	73668390	-	Mbar_A0850	-	replication factor C small subunit 2
831	 44.68	0	1029187..1030887	-	566	73668391	secD	Mbar_A0851	-	preprotein translocase subunit SecD
832	 45.32	0	1030884..1031792	-	302	73668392	-	Mbar_A0852	-	preprotein translocase subunit SecF
833	 46.88	+1	1032262..1032741	+	159	73668393	-	Mbar_A0853	-	dCMP deaminase
834	 40.74	0	1033010..1033333	+	107	73668394	-	Mbar_A0854	-	hypothetical protein
835	 44.53	0	1033537..1034304	-	255	73668395	-	Mbar_A0855	-	F420-0--gamma-glutamyl ligase
836	 36.64	-1	1036408..1036800	+	130	73668396	-	Mbar_A0857	-	hypothetical protein
837	 41.27	0	1037493..1038488	+	331	73668397	-	Mbar_A0858	-	cation efflux system protein
838	 44.59	0	1038656..1039117	-	153	73668398	-	Mbar_A0859	-	heat shock protein Hsp20
839	 44.28	0	1039342..1040538	-	398	73668399	-	Mbar_A0860	-	cofactor-independent phosphoglycerate mutase
840	 45.38	0	1040939..1042357	+	472	73668400	-	Mbar_A0861	-	aspartate kinase
841	 43.71	0	1042381..1043382	+	333	73668401	-	Mbar_A0862	-	phosphoribosylaminoimidazole synthetase
842	 30.10	-2	1044024..1044332	-	102	73668402	-	Mbar_A0863	-	hypothetical protein
843	 40.53	0	1044823..1045197	-	124	73668403	-	Mbar_A0864	-	hypothetical protein
844	 42.05	0	1045194..1045652	-	152	73668404	-	Mbar_A0865	-	hypothetical protein
845	 34.65	-1	1046009..1046311	+	100	73668405	-	Mbar_A0866	-	hypothetical protein
846	 43.74	0	1046910..1047476	-	188	73668406	-	Mbar_A0867	-	hypothetical protein
847	 38.26	0	1047590..1048684	-	364	73668407	-	Mbar_A0868	-	hypothetical protein
848	 43.69	0	1049041..1049523	+	160	73668408	-	Mbar_A0869	-	hypothetical protein
849	 42.85	0	1049907..1051094	+	395	73668409	-	Mbar_A0870	-	hypothetical protein
850	 48.60	+1	1051766..1052977	+	403	73668410	-	Mbar_A0871	-	acetylornithine aminotransferase
851	 46.59	+1	1052958..1054058	+	366	73668411	-	Mbar_A0872	-	histidinol-phosphate aminotransferase
852	 38.38	0	1054244..1054639	-	131	73668412	-	Mbar_A0873	-	hypothetical protein
853	 43.47	0	1054666..1055454	-	262	73668413	-	Mbar_A0874	-	archaetidylserine synthase
854	 41.67	0	1055470..1056081	-	203	73668414	-	Mbar_A0875	-	phosphatidylserine decarboxylase
855	 43.10	0	1056087..1056956	-	289	73668415	-	Mbar_A0876	-	hypothetical protein
856	 41.38	0	1057681..1058115	+	144	73668416	-	Mbar_A0877	-	MutT-like protein
857	 42.86	0	1058075..1058389	+	104	73668417	-	Mbar_A0878	-	DNA-directed RNA polymerase, subunit M
858	 44.72	0	1058686..1059423	+	245	73668418	-	Mbar_A0879	-	DNA polymerase sliding clamp
859	 38.89	0	1059425..1060666	+	413	73668419	-	Mbar_A0880	-	DNA primase large subunit
860	 42.87	0	1060962..1062125	+	387	73668420	-	Mbar_A0881	-	coenzyme F420 hydrogenase, beta subunit
861	 44.68	0	1062456..1062737	+	93	73668421	gatC	Mbar_A0882	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
862	 45.94	0	1062750..1064177	+	475	73668422	-	Mbar_A0883	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
863	 44.29	0	1064178..1065665	+	495	73668423	gatB	Mbar_A0884	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
864	 43.57	0	1065961..1066761	-	266	73668424	-	Mbar_A0885	-	carbon-nitrogen hydrolase
865	 45.18	0	1067939..1068850	+	303	73668425	-	Mbar_A0886	-	hypothetical protein
866	 40.49	0	1069044..1070147	-	367	73668426	-	Mbar_A0887	-	hypothetical protein
867	 37.02	0	1070335..1071255	+	306	73668427	-	Mbar_A0888	-	5-methylcytosine-specific restriction enzyme
868	 47.45	+1	1071814..1072677	+	287	73668428	-	Mbar_A0889	-	HtpX-2 peptidase
869	 42.97	0	1073157..1073810	+	217	73668429	thyA	Mbar_A0890	-	thymidylate synthase
870	 44.59	0	1073929..1075260	+	443	73668430	-	Mbar_A0891	-	3-phosphoshikimate 1-carboxyvinyltransferase
871	 35.17	-1	1075605..1076585	+	326	73668431	-	Mbar_A0892	-	hypothetical protein
872	 52.48	+2	1076826..1078538	-	570	73668432	-	Mbar_A0893	-	methyl-coenzyme M reductase, alpha subunit
873	 50.33	+1	1078549..1079295	-	248	73668433	-	Mbar_A0894	-	methyl-coenzyme M reductase, gamma subunit
874	 47.02	+1	1079297..1079917	-	206	73668434	-	Mbar_A0895	-	methyl coenzyme M reductase, subunit D
875	 46.51	0	1079924..1080439	-	171	73668435	-	Mbar_A0896	-	methyl coenzyme M reductase, subunit C
876	 49.89	+1	1080464..1081768	-	434	73668436	-	Mbar_A0897	-	methyl-coenzyme M reductase, beta subunit
877	 41.59	0	1082187..1083422	+	411	73668437	-	Mbar_A0898	-	hypothetical protein
878	 45.19	0	1083806..1087246	-	1146	73668438	-	Mbar_A0899	-	DNA polymerase II large subunit
879	 39.74	0	1087279..1087512	-	77	73668439	-	Mbar_A0900	-	hypothetical protein
880	 48.73	+1	1087888..1088991	-	367	73668440	-	Mbar_A0901	-	translation factor SUA5
881	 47.86	+1	1089041..1090327	-	428	73668441	rbcL	Mbar_A0902	-	ribulose bisophosphate carboxylase
882	 41.87	0	1091079..1092191	-	370	73668442	-	Mbar_A0903	-	cation transporter
883	 40.63	0	1092900..1094009	-	369	73668443	-	Mbar_A0904	-	cation transporter
884	 41.08	0	1095457..1096566	-	369	73668444	-	Mbar_A0905	-	hypothetical protein
885	 42.97	0	1097933..1098430	-	165	73668445	-	Mbar_A0906	-	hypothetical protein
886	 41.10	0	1098485..1099012	-	175	73668446	-	Mbar_A0907	-	putative heat shock protein
887	 46.14	0	1099166..1101430	-	754	73668447	-	Mbar_A0908	-	cell division control protein 48
888	 44.25	0	1101427..1102113	-	228	73668448	-	Mbar_A0909	-	ArsR family transcriptional regulator
889	 35.44	-1	1102482..1103147	-	221	73668449	-	Mbar_A0910	-	hypothetical protein
890	 44.75	0	1103476..1103913	-	145	73668450	-	Mbar_A0911	-	hypothetical protein
891	 42.67	0	1104764..1105438	-	224	73668451	-	Mbar_A0913	-	xanthine-guanine phosphoribosyltransferase
892	 38.35	0	1105864..1106640	+	258	73668452	-	Mbar_A0914	-	hypothetical protein
893	 34.69	-1	1106628..1107584	-	318	73668453	-	Mbar_A0915	-	hypothetical protein
894	 40.60	0	1108622..1109488	+	288	73668454	-	Mbar_A0916	-	hypothetical protein
895	 43.75	0	1109598..1109789	-	63	73668455	-	Mbar_A0917	-	hypothetical protein
896	 47.75	+1	1110653..1111984	+	443	73668456	-	Mbar_A0918	-	signal recognition particle protein Srp54
897	 47.19	+1	1112593..1113162	-	189	73668457	-	Mbar_A0919	-	GMP synthase subunit A
898	 49.12	+1	1113590..1114387	+	265	73668458	-	Mbar_A0920	-	fructose-bisphosphate aldolase
899	 46.37	0	1114485..1115627	+	380	73668459	-	Mbar_A0921	-	3-dehydroquinate synthase
900	 45.68	0	1115729..1116457	+	242	73668460	-	Mbar_A0922	-	3-dehydroquinate dehydratase
901	 46.14	0	1116454..1117296	+	280	73668461	-	Mbar_A0923	-	shikimate dehydrogenase
902	 42.16	0	1117293..1118810	+	505	73668462	-	Mbar_A0924	-	prephenate dehydrogenase
903	 41.89	0	1118895..1120448	+	517	73668463	-	Mbar_A0925	-	hypothetical protein
904	 38.11	0	1120563..1121357	-	264	73668464	-	Mbar_A0926	-	oligopeptide ABC transporter, ATP-binding protein
905	 40.95	0	1121360..1122304	-	314	73668465	-	Mbar_A0927	-	oligopeptide ABC transporter, ATP-binding protein
906	 43.03	0	1122304..1123128	-	274	73668466	-	Mbar_A0928	-	oligopeptide ABC transporter, permease protein
907	 42.34	0	1123131..1124129	-	332	73668467	-	Mbar_A0929	-	oligopeptide ABC transporter, permease protein
908	 41.65	0	1124153..1125919	-	588	73668468	-	Mbar_A0930	-	oligopeptide ABC transporter, solute-binding protein
909	 43.46	0	1125922..1126563	-	213	73668469	-	Mbar_A0931	-	formylmethanofuran dehydrogenase, subunit E
910	 41.92	0	1129297..1132173	+	958	73668470	-	Mbar_A0933	-	hypothetical protein
911	 49.63	+1	1132170..1132838	-	222	73668471	-	Mbar_A0934	-	triosephosphate isomerase
912	 46.90	+1	1133012..1134190	-	392	73668472	-	Mbar_A0935	-	bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase
913	 42.11	0	1134460..1135074	-	204	73668473	-	Mbar_A0936	-	endonuclease III
914	 41.55	0	1135645..1136277	-	210	73668474	-	Mbar_A0937	-	hypothetical protein
915	 37.29	0	1136505..1136681	-	58	73668475	-	Mbar_A0938	-	hypothetical protein
916	 38.56	0	1136747..1136899	-	50	73668476	-	Mbar_A0939	-	hypothetical protein
917	 45.10	0	1137210..1137362	+	50	73668477	-	Mbar_A0940	-	bacterioferritin
918	 42.80	0	1137438..1137680	+	80	73668478	-	Mbar_A0941	-	bacterioferritin
919	 43.47	0	1143794..1145302	+	502	73668479	-	Mbar_A0942	-	2-isopropylmalate synthase
920	 45.09	0	1145438..1146211	+	257	73668480	-	Mbar_A0943	-	sec-independent transport protein TatD
921	 44.08	0	1146417..1147058	+	213	73668481	-	Mbar_A0944	-	hypothetical protein
922	 45.85	0	1147436..1149409	+	657	73668482	-	Mbar_A0945	-	hypothetical protein
923	 34.35	-1	1150186..1150974	+	262	73668483	-	Mbar_A0946	-	hypothetical protein
924	 35.08	-1	1150971..1154126	+	1051	73668484	-	Mbar_A0947	-	hypothetical protein
925	 43.62	0	1154349..1154630	-	93	73668485	-	Mbar_A0948	-	hypothetical protein
926	 39.53	0	1154734..1154991	-	85	73668486	-	Mbar_A0949	-	hypothetical protein
927	 46.96	+1	1155256..1156422	-	388	73668487	-	Mbar_A0950	-	iron-sulfur binding reductase
928	 48.72	+1	1156427..1157797	-	456	73668488	-	Mbar_A0951	-	(S)-2-hydroxy-acid dehydrogenase
929	 37.93	0	1158230..1159012	-	260	73668489	-	Mbar_A0952	-	hypothetical protein
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.