IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
677	 41.67	0	828721..828900	+	59	73668236	-	Mbar_A0693	-	hypothetical protein
678	 46.46	0	829158..830033	-	291	73668237	-	Mbar_A0694	-	agmatinase
679	 42.64	0	830117..830503	-	128	73668238	-	Mbar_A0695	-	translation initiation factor IF-5A
680	 46.17	0	831052..832827	-	591	73668239	-	Mbar_A0696	-	aldehyde ferredoxin oxidoreductase
681	 43.38	0	833548..833985	+	145	73668240	-	Mbar_A0697	-	MutT related protein
682	 37.99	0	835830..837590	+	586	73668241	-	Mbar_A0698	-	cell surface protein
683	 44.49	0	838204..838893	-	229	73668242	-	Mbar_A0699	-	hypothetical protein
684	 41.67	0	839237..839704	-	155	73668243	-	Mbar_A0700	-	carboxymuconolactone decarboxylase
685	 42.66	0	839847..840779	-	310	73668244	-	Mbar_A0701	-	hypothetical protein
686	 42.83	0	840781..841380	-	199	73668245	-	Mbar_A0702	-	hypothetical protein
687	 45.83	0	841388..842635	-	415	73668246	-	Mbar_A0703	-	hypothetical protein
688	 42.16	0	842632..843141	-	169	73668247	-	Mbar_A0704	-	hypothetical protein
689	 45.27	0	843138..843581	-	147	73668248	-	Mbar_A0705	-	hypothetical protein
690	 43.67	0	843867..845423	-	518	73668249	-	Mbar_A0706	-	hypothetical protein
691	 44.67	0	845463..847076	-	537	73668250	-	Mbar_A0707	-	ABC transporter, ATP-binding protein
692	 41.45	0	847458..848258	-	266	73668251	-	Mbar_A0708	-	potassium/copper-transporting ATPase
693	 40.88	0	848356..849243	-	295	73668252	-	Mbar_A0709	-	hypothetical protein
694	 37.96	0	849991..851136	+	381	73668253	-	Mbar_A0710	-	hypothetical protein
695	 36.15	-1	851501..852424	+	307	73668254	-	Mbar_A0711	-	hypothetical protein
696	 44.65	0	852794..853447	-	217	73668255	-	Mbar_A0712	-	haloacid dehalogenase-like hydrolase
697	 41.23	0	855955..856701	+	248	73668256	-	Mbar_A0713	-	hypothetical protein
698	 47.95	+1	857778..860582	+	934	73668257	-	Mbar_A0714	-	aconitate hydratase
699	 43.35	0	861008..862075	+	355	73668258	-	Mbar_A0715	-	citrate synthase
700	 43.52	0	862441..863706	+	421	73668259	-	Mbar_A0716	-	4-hydroxybenzoate decarboxylase
701	 47.87	+1	863765..864982	+	405	73668260	-	Mbar_A0717	-	aconitase subunit 1
702	 39.86	0	864969..865412	+	147	73668261	-	Mbar_A0718	-	hypothetical protein
703	 44.23	0	865524..866633	+	369	73668262	-	Mbar_A0719	-	zinc metalloprotease
704	 47.00	+1	866670..867803	+	377	73668263	-	Mbar_A0720	-	Fe-S oxidoreductase
705	 46.28	0	868722..870080	-	452	73668264	-	Mbar_A0721	-	phosphomannomutase / alpha-phosphoglucomutase
706	 44.57	0	870362..871180	+	272	73668265	-	Mbar_A0722	-	hypothetical protein
707	 39.86	0	871236..871679	+	147	73668266	-	Mbar_A0723	-	amino-acid acetyltransferase
708	 40.52	0	872102..874243	+	713	73668267	-	Mbar_A0724	-	cell surface protein
709	 37.56	0	874332..874544	+	70	73668268	-	Mbar_A0725	-	hypothetical protein
710	 39.39	0	875061..876743	+	560	73668269	-	Mbar_A0726	-	hypothetical protein
711	 42.44	0	877584..878132	+	182	73668270	-	Mbar_A0727	-	hypothetical protein
712	 42.19	0	878528..878764	+	78	73668271	-	Mbar_A0728	-	hypothetical protein
713	 45.69	0	878807..879988	+	393	73668272	-	Mbar_A0729	-	NifS protein
714	 33.09	-1	880428..881249	+	273	73668273	-	Mbar_A0730	-	hypothetical protein
715	 40.67	0	881958..883634	+	558	73668274	-	Mbar_A0731	-	type II secretion system protein
716	 39.38	0	883820..885802	+	660	73668275	-	Mbar_A0732	-	transporter
717	 33.61	-1	886475..886837	-	120	73668276	-	Mbar_A0733	-	hypothetical protein
718	 44.55	0	887578..888549	+	323	73668277	-	Mbar_A0734	-	cysteine protease
719	 43.33	0	888769..890688	+	639	73668278	-	Mbar_A0735	-	hypothetical protein
720	 46.11	0	890968..891147	+	59	73668279	-	Mbar_A0736	-	ferredoxin
721	 42.98	0	891248..891724	-	158	73668280	-	Mbar_A0737	-	hypothetical protein
722	 38.38	0	892061..892852	-	263	73668281	-	Mbar_A0738	-	hypothetical protein
723	 41.17	0	893046..893900	-	284	73668282	-	Mbar_A0739	-	hypothetical protein
724	 46.46	0	894830..895606	+	258	73668283	-	Mbar_A0740	-	methanol corrinoid protein
725	 47.62	+1	895617..897002	+	461	73668284	-	Mbar_A0741	-	methanol:corrinoid methyltransferase
726	 40.93	0	897996..898640	-	214	73668285	-	Mbar_A0742	-	beta-phosphoglucomutase
727	 46.39	0	899076..899504	-	142	73668286	-	Mbar_A0743	-	methionine sulfoxide reductase B
728	 39.61	0	899830..900291	+	153	73668287	-	Mbar_A0744	-	hypothetical protein
729	 46.75	+1	901064..901816	+	250	73668288	-	Mbar_A0745	-	hypothetical protein
730	 45.13	0	901921..903132	-	403	73668289	-	Mbar_A0746	-	putative ABC transport system permease protein
731	 30.07	-2	903371..904657	+	428	73668290	-	Mbar_A0747	-	hypothetical protein
732	 44.90	0	905709..906296	-	195	73668291	-	Mbar_A0748	-	iron-sulfur flavoprotein
733	 41.71	0	906653..907201	-	182	73668292	-	Mbar_A0749	-	hypothetical protein
734	 38.62	0	908247..908492	+	81	73668293	-	Mbar_A0750	-	hypothetical protein
735	 41.73	0	909297..911393	-	698	73668294	-	Mbar_A0751	-	hypothetical protein
736	 42.64	0	911656..912171	+	171	73668295	-	Mbar_A0752	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
737	 46.59	+1	912397..913203	+	268	73668296	-	Mbar_A0753	-	fructose-bisphosphate aldolase
738	 24.90	-2	914197..914445	+	82	73668297	-	Mbar_A0754	-	hypothetical protein
739	 45.28	0	916043..917038	-	331	73668298	-	Mbar_A0756	-	hypothetical protein
740	 41.96	0	918312..919412	+	366	73668299	-	Mbar_A0757	-	divalent cation transport protein
741	 39.48	0	919617..919925	+	102	73668300	-	Mbar_A0758	-	hypothetical protein
742	 45.90	0	920164..920346	+	60	73668301	-	Mbar_A0759	-	ferredoxin
743	 48.10	+1	920566..921594	+	342	73668302	-	Mbar_A0760	-	aspartate-semialdehyde dehydrogenase
744	 46.43	0	921931..923121	-	396	73668303	-	Mbar_A0761	-	hypothetical protein
745	 49.81	+1	923218..924024	-	268	73668304	-	Mbar_A0762	-	AIR carboxylase
746	 47.30	+1	924342..925544	-	400	73668305	-	Mbar_A0763	-	aldo/keto reductase
747	 39.88	0	925681..926673	-	330	73668306	-	Mbar_A0764	-	membrane protein
748	 39.23	0	927027..928010	-	327	73668307	-	Mbar_A0765	-	hypothetical protein
749	 38.10	0	928029..929120	-	363	73668308	-	Mbar_A0766	-	hypothetical protein
750	 41.00	0	929275..929874	-	199	73668309	-	Mbar_A0767	-	nodulation protein L
751	 35.86	-1	929880..930632	-	250	73668310	-	Mbar_A0768	-	4-carboxymuconolactone decarboxylase
752	 39.47	0	930756..931895	-	379	73668311	-	Mbar_A0769	-	Fe-S oxidoreductase
753	 41.85	0	931948..932487	-	179	73668312	-	Mbar_A0770	-	hypothetical protein
754	 38.98	0	932570..933631	-	353	73668313	-	Mbar_A0771	-	zinc-binding alcohol dehydrogenase
755	 43.74	0	933701..934123	-	140	73668314	-	Mbar_A0772	-	hypothetical protein
756	 37.77	0	934522..935649	-	375	73668315	-	Mbar_A0773	-	outer membrane protein expression inhibitor
757	 37.98	0	937001..937882	-	293	73668316	-	Mbar_A0774	-	formaldehyde dehydrogenase
758	 36.70	-1	937888..938184	-	98	73668317	-	Mbar_A0775	-	formaldehyde dehydrogenase
759	 42.02	0	938251..938676	-	141	73668318	-	Mbar_A0776	-	hypothetical protein
760	 48.90	+1	938846..939616	-	256	73668319	-	Mbar_A0777	-	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
761	 41.08	0	940292..940717	-	141	73668320	-	Mbar_A0778	-	nodulation protein L
762	 45.17	0	941070..942176	-	368	73668321	-	Mbar_A0779	-	hypothetical protein
763	 41.24	0	942191..942886	-	231	73668322	-	Mbar_A0780	-	hypothetical protein
764	 45.02	0	942901..943593	-	230	73668323	-	Mbar_A0781	-	hypothetical protein
765	 52.58	+2	943747..945159	-	470	73668324	-	Mbar_A0782	-	putative transmembrane efflux protein
766	 43.56	0	945193..945417	-	74	73668325	-	Mbar_A0783	-	iron-containing alcohol dehydrogenase
767	 42.34	0	945418..946350	-	310	73668326	-	Mbar_A0784	-	iron-containing alcohol dehydrogenase
768	 44.30	0	946700..947602	-	300	73668327	-	Mbar_A0785	-	hypothetical protein
769	 43.26	0	947595..948662	-	355	73668328	-	Mbar_A0786	-	hypothetical protein
770	 39.38	0	948826..949404	-	192	73668329	-	Mbar_A0787	-	TetR family transcriptional regulator
771	 47.29	+1	949591..950292	+	233	73668330	pyrH	Mbar_A0788	-	uridylate kinase
772	 42.07	0	950565..951743	+	392	73668331	-	Mbar_A0789	-	hypothetical protein
773	 46.33	0	951850..952965	+	371	73668332	-	Mbar_A0790	-	putative ABC transporter permease protein
774	 46.30	0	953072..953734	+	220	73668333	-	Mbar_A0791	-	ABC transporter, ATP-binding protein
775	 31.62	-2	953731..954198	-	155	73668334	-	Mbar_A0792	-	acetyltransferase
776	 46.10	0	954382..955305	-	307	73668335	-	Mbar_A0793	-	translation initiation factor IF-2B subunit delta
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.