IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
628	 43.00	0	763772..764650	-	292	73668187	-	Mbar_A0643	-	oligopeptide ABC transporter, permease protein
629	 40.11	0	764660..765604	-	314	73668188	-	Mbar_A0644	-	oligopeptide ABC transporter, permease protein
630	 41.40	0	765659..767233	-	524	73668189	-	Mbar_A0645	-	oligopeptide ABC transporter, solute-binding protein
631	 41.86	0	767253..768014	-	253	73668190	-	Mbar_A0646	-	UbiE/COQ5 methyltransferase
632	 42.94	0	769855..770562	-	235	73668191	-	Mbar_A0647	-	reduced coenzyme F420:NADP oxidoreductase
633	 42.78	0	770865..771404	-	179	73668192	-	Mbar_A0648	-	hypothetical protein
634	 40.37	0	771949..773142	+	397	73668193	-	Mbar_A0649	-	Xaa-Pro aminopeptidase
635	 37.07	0	773325..774074	-	249	73668194	-	Mbar_A0650	-	hypothetical protein
636	 40.74	0	774085..774381	-	98	73668195	-	Mbar_A0651	-	hypothetical protein
637	 39.81	0	774729..776504	-	591	73668196	-	Mbar_A0652	-	hypothetical protein
638	 38.30	0	776712..777194	-	160	73668197	-	Mbar_A0653	-	transposase
639	 38.55	0	777616..778344	-	242	73668198	-	Mbar_A0654	-	hypothetical protein
640	 38.74	0	778381..778842	-	153	73668199	-	Mbar_A0655	-	hypothetical protein
641	 36.90	-1	779391..780119	+	242	73668200	-	Mbar_A0656	-	hypothetical protein
642	 35.98	-1	780203..780580	+	125	73668201	-	Mbar_A0657	-	hypothetical protein
643	 33.33	-1	780577..781326	+	249	73668202	-	Mbar_A0658	-	hypothetical protein
644	 37.17	0	781398..782258	+	286	73668203	-	Mbar_A0659	-	ABC transporter, ATP-binding protein
645	 37.02	0	782959..784665	-	568	73668204	-	Mbar_A0660	-	hypothetical protein
646	 33.58	-1	785426..785836	+	136	73668205	-	Mbar_A0661	-	hypothetical protein
647	 48.02	+1	786180..787214	-	344	73668206	-	Mbar_A0662	-	coenzyme F420 hydrogenase beta subunit
648	 49.06	+1	787221..787964	-	247	73668207	-	Mbar_A0663	-	glutamate synthase (NADPH) GltB3 subunit
649	 48.08	+1	787970..789481	-	503	73668208	-	Mbar_A0664	-	glutamate synthase (NADPH) GltB2 subunit
650	 45.20	0	789478..790530	-	350	73668209	-	Mbar_A0665	-	glutamate synthase (NADPH) GltB1 subunit
651	 42.86	0	791346..792689	-	447	73668210	-	Mbar_A0666	-	L-glutamine synthetase
652	 36.67	-1	793618..794037	-	139	73668211	-	Mbar_A0667	-	hypothetical protein
653	 39.19	0	794365..794637	-	90	73668212	-	Mbar_A0668	-	hypothetical protein
654	 41.72	0	795115..797106	-	663	73668213	-	Mbar_A0669	-	glutathione-regulated potassium-efflux system protein
655	 44.02	0	798061..799305	+	414	73668214	-	Mbar_A0670	-	L-lysine 2,3-aminomutase
656	 38.65	0	799381..800358	+	325	73668215	-	Mbar_A0671	-	acetyltransferase (GNAT) family protein
657	 43.79	0	802306..803931	+	541	73668216	-	Mbar_A0672	-	hypothetical protein
658	 45.88	0	804143..805489	-	448	73668217	-	Mbar_A0673	-	adenylosuccinate lyase
659	 42.00	0	805973..806122	+	49	73668218	rpl40e	Mbar_A0674	-	50S ribosomal protein L40e
660	 48.39	+1	806129..806872	+	247	73668219	-	Mbar_A0675	-	geranylgeranylglyceryl phosphate synthase-like protein
661	 45.30	0	807443..809197	+	584	73668220	-	Mbar_A0676	-	methylcoenzyme M reductase system, component A2
662	 41.83	0	809491..810243	-	250	73668221	-	Mbar_A0677	-	iron-sulfur flavoprotein
663	 42.70	0	810389..810943	-	184	73668222	-	Mbar_A0678	-	flavoredoxin
664	 40.58	0	811671..813008	+	445	73668223	-	Mbar_A0679	-	sensory transduction histidine kinase
665	 40.81	0	813215..814471	-	418	73668224	-	Mbar_A0680	-	hypothetical protein
666	 42.75	0	814521..815189	-	222	73668225	-	Mbar_A0681	-	ABC transporter, ATP-binding protein
667	 41.15	0	815663..816877	-	404	73668226	-	Mbar_A0682	-	ABC transporter, permease protein
668	 41.71	0	816919..818160	-	413	73668227	-	Mbar_A0683	-	hypothetical protein
669	 40.29	0	822760..823593	-	277	73668228	-	Mbar_A0685	-	ABC transporter, permease protein
670	 39.40	0	823590..824627	-	345	73668229	-	Mbar_A0686	-	ABC transporter, ATP-binding protein
671	 36.40	-1	825370..825630	+	86	73668230	-	Mbar_A0687	-	putative small heat shock protein
672	 35.92	-1	825702..826010	+	102	73668231	-	Mbar_A0688	-	putative small heat shock protein
673	 37.62	0	826144..826353	+	69	73668232	-	Mbar_A0689	-	hypothetical protein
674	 30.21	-2	826907..827194	+	95	73668233	-	Mbar_A0690	-	IS1648 transposase
675	 35.68	-1	827530..827913	+	127	73668234	-	Mbar_A0691	-	hypothetical protein
676	 40.44	0	828057..828281	+	74	73668235	-	Mbar_A0692	-	XRE family transcriptional regulator
677	 41.67	0	828721..828900	+	59	73668236	-	Mbar_A0693	-	hypothetical protein
678	 46.46	0	829158..830033	-	291	73668237	-	Mbar_A0694	-	agmatinase
679	 42.64	0	830117..830503	-	128	73668238	-	Mbar_A0695	-	translation initiation factor IF-5A
680	 46.17	0	831052..832827	-	591	73668239	-	Mbar_A0696	-	aldehyde ferredoxin oxidoreductase
681	 43.38	0	833548..833985	+	145	73668240	-	Mbar_A0697	-	MutT related protein
682	 37.99	0	835830..837590	+	586	73668241	-	Mbar_A0698	-	cell surface protein
683	 44.49	0	838204..838893	-	229	73668242	-	Mbar_A0699	-	hypothetical protein
684	 41.67	0	839237..839704	-	155	73668243	-	Mbar_A0700	-	carboxymuconolactone decarboxylase
685	 42.66	0	839847..840779	-	310	73668244	-	Mbar_A0701	-	hypothetical protein
686	 42.83	0	840781..841380	-	199	73668245	-	Mbar_A0702	-	hypothetical protein
687	 45.83	0	841388..842635	-	415	73668246	-	Mbar_A0703	-	hypothetical protein
688	 42.16	0	842632..843141	-	169	73668247	-	Mbar_A0704	-	hypothetical protein
689	 45.27	0	843138..843581	-	147	73668248	-	Mbar_A0705	-	hypothetical protein
690	 43.67	0	843867..845423	-	518	73668249	-	Mbar_A0706	-	hypothetical protein
691	 44.67	0	845463..847076	-	537	73668250	-	Mbar_A0707	-	ABC transporter, ATP-binding protein
692	 41.45	0	847458..848258	-	266	73668251	-	Mbar_A0708	-	potassium/copper-transporting ATPase
693	 40.88	0	848356..849243	-	295	73668252	-	Mbar_A0709	-	hypothetical protein
694	 37.96	0	849991..851136	+	381	73668253	-	Mbar_A0710	-	hypothetical protein
695	 36.15	-1	851501..852424	+	307	73668254	-	Mbar_A0711	-	hypothetical protein
696	 44.65	0	852794..853447	-	217	73668255	-	Mbar_A0712	-	haloacid dehalogenase-like hydrolase
697	 41.23	0	855955..856701	+	248	73668256	-	Mbar_A0713	-	hypothetical protein
698	 47.95	+1	857778..860582	+	934	73668257	-	Mbar_A0714	-	aconitate hydratase
699	 43.35	0	861008..862075	+	355	73668258	-	Mbar_A0715	-	citrate synthase
700	 43.52	0	862441..863706	+	421	73668259	-	Mbar_A0716	-	4-hydroxybenzoate decarboxylase
701	 47.87	+1	863765..864982	+	405	73668260	-	Mbar_A0717	-	aconitase subunit 1
702	 39.86	0	864969..865412	+	147	73668261	-	Mbar_A0718	-	hypothetical protein
703	 44.23	0	865524..866633	+	369	73668262	-	Mbar_A0719	-	zinc metalloprotease
704	 47.00	+1	866670..867803	+	377	73668263	-	Mbar_A0720	-	Fe-S oxidoreductase
705	 46.28	0	868722..870080	-	452	73668264	-	Mbar_A0721	-	phosphomannomutase / alpha-phosphoglucomutase
706	 44.57	0	870362..871180	+	272	73668265	-	Mbar_A0722	-	hypothetical protein
707	 39.86	0	871236..871679	+	147	73668266	-	Mbar_A0723	-	amino-acid acetyltransferase
708	 40.52	0	872102..874243	+	713	73668267	-	Mbar_A0724	-	cell surface protein
709	 37.56	0	874332..874544	+	70	73668268	-	Mbar_A0725	-	hypothetical protein
710	 39.39	0	875061..876743	+	560	73668269	-	Mbar_A0726	-	hypothetical protein
711	 42.44	0	877584..878132	+	182	73668270	-	Mbar_A0727	-	hypothetical protein
712	 42.19	0	878528..878764	+	78	73668271	-	Mbar_A0728	-	hypothetical protein
713	 45.69	0	878807..879988	+	393	73668272	-	Mbar_A0729	-	NifS protein
714	 33.09	-1	880428..881249	+	273	73668273	-	Mbar_A0730	-	hypothetical protein
715	 40.67	0	881958..883634	+	558	73668274	-	Mbar_A0731	-	type II secretion system protein
716	 39.38	0	883820..885802	+	660	73668275	-	Mbar_A0732	-	transporter
717	 33.61	-1	886475..886837	-	120	73668276	-	Mbar_A0733	-	hypothetical protein
718	 44.55	0	887578..888549	+	323	73668277	-	Mbar_A0734	-	cysteine protease
719	 43.33	0	888769..890688	+	639	73668278	-	Mbar_A0735	-	hypothetical protein
720	 46.11	0	890968..891147	+	59	73668279	-	Mbar_A0736	-	ferredoxin
721	 42.98	0	891248..891724	-	158	73668280	-	Mbar_A0737	-	hypothetical protein
722	 38.38	0	892061..892852	-	263	73668281	-	Mbar_A0738	-	hypothetical protein
723	 41.17	0	893046..893900	-	284	73668282	-	Mbar_A0739	-	hypothetical protein
724	 46.46	0	894830..895606	+	258	73668283	-	Mbar_A0740	-	methanol corrinoid protein
725	 47.62	+1	895617..897002	+	461	73668284	-	Mbar_A0741	-	methanol:corrinoid methyltransferase
726	 40.93	0	897996..898640	-	214	73668285	-	Mbar_A0742	-	beta-phosphoglucomutase
727	 46.39	0	899076..899504	-	142	73668286	-	Mbar_A0743	-	methionine sulfoxide reductase B
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.