IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
525	 44.28	0	640156..641352	+	398	73668084	-	Mbar_A0538	-	alpha-amylase
526	 41.85	0	641390..642199	+	269	73668085	-	Mbar_A0539	-	hypothetical protein
527	 43.82	0	642196..644217	+	673	73668086	-	Mbar_A0540	-	glucoamylase
528	 43.40	0	644704..645975	-	423	161712041	-	Mbar_A0541	-	seryl-tRNA synthetase
529	 43.21	0	646230..647414	-	394	73668088	-	Mbar_A0542	-	signal peptide peptidase A
530	 47.77	+1	648158..650290	+	710	73668089	metG	Mbar_A0543	-	methionyl-tRNA synthetase
531	 38.75	0	650847..651566	+	239	73668090	-	Mbar_A0544	-	hypothetical protein
532	 38.45	0	651853..654762	+	969	73668091	-	Mbar_A0545	-	hypothetical protein
533	 35.90	-1	654948..656465	+	505	73668092	-	Mbar_A0546	-	WD repeat-containing protein
534	 44.33	0	656764..657372	-	202	73668093	-	Mbar_A0547	-	orotate phosphoribosyltransferase
535	 44.94	0	657558..658091	-	177	73668094	-	Mbar_A0548	-	adenylate cyclase
536	 44.86	0	659121..659519	-	132	73668095	-	Mbar_A0549	-	hypothetical protein
537	 50.30	+1	659526..660698	-	390	73668096	-	Mbar_A0550	-	acetyl-CoA acetyltransferase
538	 47.62	+1	660715..661764	-	349	73668097	-	Mbar_A0551	-	hypothetical protein
539	 42.78	0	661812..662552	-	246	73668098	-	Mbar_A0552	-	XRE family transcriptional regulator
540	 45.62	0	662689..663510	+	273	73668099	-	Mbar_A0553	-	hypothetical protein
541	 30.84	-2	663709..664590	+	293	73668100	-	Mbar_A0554	-	hypothetical protein
542	 36.11	-1	664912..665199	-	95	73668101	-	Mbar_A0555	-	hypothetical protein
543	 27.50	-2	665783..666313	+	176	73668102	-	Mbar_A0556	-	hypothetical protein
544	 30.65	-2	666699..667406	+	235	73668103	-	Mbar_A0557	-	haloacid dehalogenase-like hydrolase family protein
545	 32.51	-1	667596..668078	+	160	73668104	-	Mbar_A0558	-	putative acetyltransferase
546	 46.30	0	668238..670142	+	634	73668105	-	Mbar_A0559	-	hypothetical protein
547	 45.72	0	670274..671371	-	365	73668106	-	Mbar_A0560	-	DNA polymerase IV
548	 41.51	0	671799..672617	-	272	73668107	-	Mbar_A0562	-	putative methyltransferase
549	 41.92	0	672610..673482	-	290	73668108	-	Mbar_A0563	-	hypothetical protein
550	 39.61	0	674733..675719	+	328	73668109	-	Mbar_A0564	-	hypothetical protein
551	 44.44	0	676448..676753	+	101	73668110	-	Mbar_A0565	-	cobalt transport protein CbiN
552	 32.87	-1	677383..678024	+	213	73668111	-	Mbar_A0566	-	hypothetical protein
553	 36.72	-1	678062..679243	+	393	73668112	-	Mbar_A0567	-	hypothetical protein
554	 34.15	-1	679418..679786	+	122	73668113	-	Mbar_A0568	-	transposase
555	 41.10	0	680219..680926	-	235	73668114	-	Mbar_A0569	-	endonuclease III
556	 41.91	0	681040..682392	-	450	73668115	-	Mbar_A0570	-	glutathione reductase (NADPH)
557	 46.32	0	682785..684401	+	538	73668116	-	Mbar_A0571	-	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
558	 33.33	-1	686250..686441	-	63	73668117	-	Mbar_A0572	-	hypothetical protein
559	 43.34	0	686658..687926	+	422	73668118	-	Mbar_A0573	-	arsenite permease
560	 45.94	0	688258..689352	-	364	73668119	-	Mbar_A0574	-	GTP-binding protein
561	 45.72	0	689769..691697	-	642	73668120	-	Mbar_A0575	-	molybdenum cofactor biosynthesis protein
562	 45.51	0	692109..692987	-	292	73668121	-	Mbar_A0576	-	branched-chain amino acid aminotransferase
563	 45.98	0	693812..694420	-	202	73668122	-	Mbar_A0577	-	hypothetical protein
564	 44.96	0	694570..695730	-	386	73668123	-	Mbar_A0578	-	hypothetical protein
565	 44.95	0	696206..696928	-	240	73668124	-	Mbar_A0579	-	hypothetical protein
566	 45.52	0	697022..698449	-	475	73668125	-	Mbar_A0580	-	hypothetical protein
567	 45.40	0	698446..698793	-	115	73668126	-	Mbar_A0581	-	ArsR family transcriptional regulator
568	 42.27	0	699668..700372	+	234	73668127	-	Mbar_A0582	-	hypothetical protein
569	 44.83	0	700747..701520	-	257	73668128	-	Mbar_A0583	-	cobalt transport family protein
570	 45.76	0	701690..702526	-	278	73668129	-	Mbar_A0584	-	membrane associated ATPase
571	 44.36	0	702502..703326	-	274	73668130	-	Mbar_A0585	-	cobalt transporter ATP-binding subunit
572	 45.21	0	703446..704009	-	187	73668131	-	Mbar_A0586	-	biotin synthesis BioY protein
573	 45.00	0	704805..705284	+	159	73668132	-	Mbar_A0587	-	acetyltransferase
574	 42.19	0	705489..706154	+	221	73668133	-	Mbar_A0588	-	iron dependent repressor
575	 46.66	+1	706270..708183	+	637	73668134	-	Mbar_A0589	-	ferrous iron transport protein B
576	 39.58	0	708400..708639	+	79	73668135	-	Mbar_A0590	-	hypothetical protein
577	 45.71	0	709368..710450	+	360	73668136	-	Mbar_A0591	-	hypothetical protein
578	 44.64	0	710503..714030	+	1175	73668137	-	Mbar_A0592	-	condensin subunit Smc
579	 42.06	0	714023..715042	+	339	73668138	-	Mbar_A0593	-	condensin subunit ScpA
580	 45.43	0	715100..716215	+	371	73668139	-	Mbar_A0594	-	condensin subunit ScpB
581	 44.57	0	716409..716960	+	183	73668140	-	Mbar_A0595	-	transcription factor
582	 41.61	0	717089..718006	+	305	73668141	-	Mbar_A0596	-	dolichol-phosphate mannosyltransferase
583	 48.56	+1	718417..719703	+	428	73668142	-	Mbar_A0597	-	thiamine biosynthesis protein ThiC
584	 40.25	0	720344..720820	+	158	73668143	-	Mbar_A0598	-	methylated-DNA--protein-cysteine methyltransferase
585	 44.76	0	720872..721615	+	247	73668144	-	Mbar_A0599	-	hypothetical protein
586	 37.46	0	722335..723207	+	290	73668145	-	Mbar_A0600	-	gliding motility protein
587	 36.69	-1	723197..724240	+	347	73668146	-	Mbar_A0601	-	putative ABC-2 type transport system permease protein
588	 39.73	0	724814..725329	-	171	73668147	-	Mbar_A0602	-	hypothetical protein
589	 46.01	0	725449..726237	+	262	73668148	-	Mbar_A0603	-	hypothetical protein
590	 43.56	0	726544..728049	+	501	73668149	-	Mbar_A0604	-	phycocyanin alpha phycocyanobilin lyase related protein
591	 38.62	0	728184..728372	-	62	73668150	-	Mbar_A0605	-	hypothetical protein
592	 33.18	-1	728743..729402	+	219	73668151	-	Mbar_A0606	-	hypothetical protein
593	 40.03	0	729498..731333	+	611	73668152	-	Mbar_A0607	-	hypothetical protein
594	 43.30	0	731545..732537	-	330	73668153	-	Mbar_A0608	-	coenzyme PQQ synthesis protein E
595	 39.56	0	732830..733471	-	213	73668154	-	Mbar_A0609	-	hypothetical protein
596	 34.92	-1	733721..734350	-	209	73668155	-	Mbar_A0610	-	hypothetical protein
597	 37.70	0	734606..735223	-	205	73668156	-	Mbar_A0611	-	hypothetical protein
598	 54.52	+2	735929..736249	-	106	73668157	rpl12p	Mbar_A0612	-	50S ribosomal protein L12P
599	 47.74	+1	736286..737326	-	346	73668158	rplP0	Mbar_A0613	-	acidic ribosomal protein P0
600	 44.39	0	737327..737968	-	213	73668159	rpl1P	Mbar_A0614	-	50S ribosomal protein L1P
601	 46.30	0	738208..738693	-	161	73668160	rpl11p	Mbar_A0615	-	50S ribosomal protein L11P
602	 44.23	0	738812..739270	-	152	73668161	nusG	Mbar_A0616	-	transcription antitermination protein NusG
603	 45.83	0	739267..739482	-	71	73668162	secE	Mbar_A0617	-	preprotein translocase subunit SecE
604	 48.67	+1	739901..741028	-	375	73668163	-	Mbar_A0618	-	cell division protein FtsZ
605	 40.68	0	741394..741978	-	194	73668164	-	Mbar_A0619	-	hypothetical protein
606	 46.22	0	742166..743461	-	431	73668165	-	Mbar_A0620	-	proteasome-activating nucleotidase
607	 42.39	0	743519..744004	+	161	73668166	-	Mbar_A0621	-	XRE family transcriptional regulator
608	 43.18	0	744371..745213	-	280	73668167	-	Mbar_A0622	-	putative molybdenum cofactor biosynthesis protein
609	 45.38	0	745528..746556	+	342	73668168	-	Mbar_A0623	-	isocitrate dehydrogenase (NADP)
610	 43.12	0	746580..747908	-	442	73668169	-	Mbar_A0624	-	2-isopropylmalate synthase
611	 43.35	0	748679..749227	+	182	73668170	-	Mbar_A0625	-	precorrin-8W decarboxylase
612	 42.86	0	749294..749902	+	202	73668171	-	Mbar_A0626	-	cobalt-precorrin-2 C(20)-methyltransferase
613	 46.50	0	750029..750757	+	242	73668172	-	Mbar_A0627	-	cobalt-factor II C20-methyltransferase / precorrin-4 C11-methyltransferase
614	 45.57	0	751701..752501	+	266	73668173	-	Mbar_A0629	-	precorrin-3B C17-methyltransferase
615	 46.48	0	752491..753228	+	245	73668174	-	Mbar_A0630	-	precorrin-8X methylmutase
616	 37.82	0	753561..754028	-	155	73668175	-	Mbar_A0631	-	transposase
617	 44.70	0	754585..755235	-	216	73668176	-	Mbar_A0632	-	cytochrome c-type biogenesis protein
618	 42.72	0	755364..755981	-	205	73668177	-	Mbar_A0633	-	thiol-disulfide isomerase/thioredoxin
619	 45.79	0	756530..757372	-	280	73668178	-	Mbar_A0634	-	ATP-binding protein involved in chromosome partitioning
620	 47.49	+1	757427..757765	-	112	73668179	-	Mbar_A0635	-	hypothetical protein
621	 40.96	0	758095..758343	-	82	73668180	-	Mbar_A0636	-	hypothetical protein
622	 38.76	0	758634..759167	+	177	73668181	-	Mbar_A0637	-	hypothetical protein
623	 42.22	0	759232..759681	+	149	73668182	-	Mbar_A0638	-	iron-sulfur binding protein
624	 44.30	0	759951..760853	-	300	73668183	-	Mbar_A0639	-	CoB--CoM heterodisulfide reductase subunit B
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.