IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2	 44.86	0	2107..3381	-	424	73667561	-	Mbar_A0003	-	glutamyl-tRNA(Gln) amidotransferase subunit D
3	 47.97	+1	3636..5111	-	491	73667562	-	Mbar_A0004	-	argininosuccinate lyase
4	 29.81	-2	5621..6046	-	141	73667563	-	Mbar_A0005	-	hypothetical protein
5	 34.52	-1	6080..6667	-	195	73667564	-	Mbar_A0006	-	hypothetical protein
6	 37.35	0	7051..7299	+	82	73667565	-	Mbar_A0007	-	hypothetical protein
7	 42.33	0	7472..8071	+	199	73667566	-	Mbar_A0008	-	phosphatidyl-N-methylethanolamine N-methyltransferase / phosphatidylethanolamine N-methyltransferase
8	 31.75	-2	8181..8495	+	104	73667567	-	Mbar_A0009	-	hypothetical protein
9	 45.54	0	8845..10155	-	436	73667568	-	Mbar_A0010	-	thiazole biosynthesis protein
10	 42.82	0	10465..13881	-	1138	73667569	-	Mbar_A0011	-	hypothetical protein
11	 39.71	0	14637..15467	+	276	73667570	-	Mbar_A0012	-	hypothetical protein
12	 44.27	0	16069..16818	-	249	73667571	-	Mbar_A0014	-	hypothetical protein
13	 42.73	0	17373..18968	+	531	73667572	-	Mbar_A0015	-	hypothetical protein
14	 44.89	0	19391..20368	+	325	73667573	-	Mbar_A0016	-	hypothetical protein
15	 30.23	-2	20774..21610	-	278	73667574	-	Mbar_A0017	-	transposase, putative
16	 33.33	-1	21634..21837	-	67	73667575	-	Mbar_A0018	-	hypothetical protein
17	 27.46	-2	22195..23232	-	345	73667576	-	Mbar_A0019	-	hypothetical protein
18	 42.76	0	24336..25523	+	395	73667577	-	Mbar_A0020	-	hypothetical protein
19	 35.81	-1	25559..26485	+	308	73667578	-	Mbar_A0021	-	UDP-glucose 4-epimerase
20	 38.74	0	26763..28019	+	418	73667579	-	Mbar_A0022	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
21	 32.81	-1	28012..28968	+	318	73667580	-	Mbar_A0023	-	UDP-N-acetylmuramate dehydrogenase
22	 30.38	-2	29515..30834	+	439	73667581	-	Mbar_A0025	-	hypothetical protein
23	 28.24	-2	31258..32436	-	392	73667582	-	Mbar_A0026	-	hypothetical protein
24	 28.26	-2	32530..34323	-	597	73667583	-	Mbar_A0027	-	hypothetical protein
25	 29.59	-2	34516..35637	-	373	73667584	-	Mbar_A0028	-	LPS glycosyltransferase
26	 31.72	-2	35843..37021	-	392	73667585	-	Mbar_A0029	-	glycosyltransferase
27	 36.57	-1	36999..37709	-	236	73667586	-	Mbar_A0030	-	hypothetical protein
28	 39.42	0	37684..38850	-	388	73667587	-	Mbar_A0031	-	hypothetical protein
29	 36.99	0	38925..39170	-	81	73667588	-	Mbar_A0032	-	dolichyl-phosphate beta-D-mannosyltransferase
30	 45.43	0	39167..39910	-	247	73667589	-	Mbar_A0033	-	dolichyl-phosphate beta-D-mannosyltransferase
31	 41.62	0	41341..42462	+	373	73667590	-	Mbar_A0034	-	GDP-mannose 4,6 dehydratase
32	 39.51	0	42516..43454	+	312	73667591	-	Mbar_A0035	-	GDP-fucose synthetase
33	 40.80	0	43682..44632	+	316	73667592	-	Mbar_A0036	-	dTDP-glucose 4,6-dehydratase
34	 38.74	0	44947..45408	+	153	73667593	-	Mbar_A0037	-	GDP-fucose synthetase
35	 30.89	-2	46039..47103	+	354	73667594	-	Mbar_A0038	-	transposase, putative
36	 34.37	-1	48133..48615	+	160	73667595	-	Mbar_A0039	-	hypothetical protein
37	 30.12	-2	49408..50715	+	435	73667596	-	Mbar_A0040	-	polysaccharide biosynthesis protein
38	 26.54	-2	50775..52760	+	661	73667597	-	Mbar_A0041	-	hypothetical protein
39	 36.22	-1	52987..53367	+	126	73667598	-	Mbar_A0042	-	hypothetical protein
40	 35.10	-1	53358..53696	+	112	73667599	-	Mbar_A0043	-	hypothetical protein
41	 33.86	-1	53809..53997	-	62	73667600	-	Mbar_A0044	-	transposase
42	 36.90	-1	53994..54329	-	111	73667601	-	Mbar_A0045	-	hypothetical protein
43	 31.90	-2	54551..55108	-	185	73667602	-	Mbar_A0046	-	hypothetical protein
44	 29.26	-2	55508..56194	-	228	73667603	-	Mbar_A0047	-	transposase
45	 32.70	-1	57944..58420	-	158	73667604	-	Mbar_A0049	-	transposase
46	 30.66	-2	58755..59837	-	360	73667605	-	Mbar_A0050	-	glycosyl transferase
47	 31.00	-2	59834..61033	-	399	73667606	-	Mbar_A0051	-	hypothetical protein
48	 35.27	-1	61030..62115	-	361	73667607	-	Mbar_A0052	-	UDP-N-acetylglucosamine 2-epimerase
49	 34.52	-1	62118..63209	-	363	73667608	-	Mbar_A0053	-	hypothetical protein
50	 39.51	0	63786..65372	-	528	73667609	-	Mbar_A0054	-	dolichyl-phosphate beta-D-mannosyltransferase
51	 39.29	0	66631..67821	+	396	73667610	-	Mbar_A0055	-	hypothetical protein
52	 39.33	0	68576..68842	-	88	73667611	-	Mbar_A0056	-	hypothetical protein
53	 46.00	0	69624..70223	-	199	73667612	-	Mbar_A0057	-	indolepyruvate oxidoreductase subunit B
54	 48.70	+1	70220..72022	-	600	73667613	-	Mbar_A0058	-	indolepyruvate oxidoreductase, subunit
55	 45.71	0	72388..73203	-	271	73667614	-	Mbar_A0059	-	CODH nickel-insertion accessory protein
56	 48.35	+1	73851..74516	-	221	73667615	-	Mbar_A0060	-	orotidine-5'-phosphate decarboxylase
57	 46.44	0	74535..75488	-	317	73667616	-	Mbar_A0061	-	putative deoxyhypusine synthase
58	 41.34	0	75721..76407	+	228	73667617	-	Mbar_A0062	-	ABC transporter, ATP-binding protein
59	 41.03	0	76536..76886	+	116	73667618	-	Mbar_A0063	-	transposase
60	 46.94	+1	77376..77669	-	97	73667619	-	Mbar_A0064	-	hypothetical protein
61	 36.19	-1	80478..81038	+	186	73667620	-	Mbar_A0067	-	hypothetical protein
62	 41.32	0	81485..81922	+	145	73667621	-	Mbar_A0068	-	hypothetical protein
63	 44.93	0	82489..86343	-	1284	73667622	-	Mbar_A0069	-	hypothetical protein
64	 46.65	+1	86333..87601	-	422	73667623	-	Mbar_A0070	-	phosphoesterase
65	 35.22	-1	88012..88383	-	123	73667624	-	Mbar_A0071	-	hypothetical protein
66	 42.33	0	90290..90778	-	162	73667625	-	Mbar_A0073	-	MutT/nudix family protein
67	 37.22	0	91168..91938	+	256	73667626	-	Mbar_A0074	-	hypothetical protein
68	 46.94	+1	92676..93476	-	266	73667627	-	Mbar_A0075	-	DNA-directed RNA polymerase subunit D
69	 50.92	+1	93561..93941	-	126	73667628	rps11p	Mbar_A0076	-	30S ribosomal protein S11P
70	 47.00	+1	93944..94594	-	216	73667629	rps4p	Mbar_A0077	-	30S ribosomal protein S4
71	 48.47	+1	94617..95105	-	162	73667630	rps13p	Mbar_A0078	-	30S ribosomal protein S13P
72	 37.77	0	95498..96805	+	435	73667631	-	Mbar_A0079	-	transposase
73	 42.00	0	97069..98637	-	522	73667632	-	Mbar_A0080	-	hypothetical protein
74	 43.22	0	98630..99337	-	235	73667633	-	Mbar_A0081	-	gliding motility protein
75	 48.28	+1	100178..101194	-	338	73667634	-	Mbar_A0082	-	H/ACA RNA-protein complex component Cbf5p
76	 44.01	0	101663..102205	-	180	73667635	-	Mbar_A0083	-	cytidylate kinase
77	 44.28	0	102205..102825	-	206	73667636	-	Mbar_A0084	-	integral membrane protein
78	 41.58	0	103516..103794	-	92	73667637	-	Mbar_A0085	-	hypothetical protein
79	 44.44	0	103975..104622	-	215	73667638	adk	Mbar_A0086	-	adenylate kinase
80	 46.65	+1	104707..106185	-	492	73667639	-	Mbar_A0087	-	preprotein translocase subunit SecY
81	 48.94	+1	106328..106750	-	140	73667640	rpl15p	Mbar_A0088	-	50S ribosomal protein L15P
82	 46.32	0	106761..107222	-	153	73667641	rpl30p	Mbar_A0089	-	50S ribosomal protein L30P
83	 47.85	+1	107224..107850	-	208	73667642	rps5p	Mbar_A0090	-	30S ribosomal protein S5P
84	 47.43	+1	107860..108384	-	174	73667643	rpl18p	Mbar_A0091	-	50S ribosomal protein L18P
85	 47.02	+1	108401..108853	-	150	73667644	rpl19e	Mbar_A0092	-	50S ribosomal protein L19e
86	 44.98	0	108856..109293	-	145	73667645	rpl32e	Mbar_A0093	-	50S ribosomal protein L32e
87	 42.51	0	109304..109837	-	177	73667646	rpl6p	Mbar_A0094	-	50S ribosomal protein L6P
88	 46.06	0	109855..110247	-	130	73667647	rps8p	Mbar_A0095	-	30S ribosomal protein S8P
89	 46.41	0	110258..110410	-	50	73667648	rps14P	Mbar_A0096	-	30S ribosomal protein S14P
90	 46.86	+1	110411..110920	-	169	73667649	rpl5p	Mbar_A0097	-	50S ribosomal protein L5P
91	 46.19	0	110913..111620	-	235	73667650	-	Mbar_A0098	-	30S ribosomal protein S4e
92	 48.43	+1	111634..111984	-	116	73667651	rpl24p	Mbar_A0099	-	50S ribosomal protein L24P
93	 50.38	+1	111995..112393	-	132	73667652	rpl14p	Mbar_A0100	-	50S ribosomal protein L14P
94	 44.85	0	112390..112719	-	109	73667653	rps17p	Mbar_A0101	-	30S ribosomal protein S17P
95	 43.84	0	112724..113056	-	110	73667654	-	Mbar_A0102	-	ribonuclease P protein component 1
96	 49.02	+1	113046..113249	-	67	73667655	rpmC	Mbar_A0103	-	50S ribosomal protein L29
97	 48.82	+1	113249..114184	-	311	73667656	rps3p	Mbar_A0104	-	30S ribosomal protein S3P
98	 43.20	0	114185..114640	-	151	73667657	rpl22p	Mbar_A0105	-	50S ribosomal protein L22P
99	 46.96	+1	114652..115062	-	136	73667658	rps19p	Mbar_A0106	-	30S ribosomal protein S19P
100	 50.35	+1	115078..115794	-	238	73667659	rpl2p	Mbar_A0107	-	50S ribosomal protein L2P
101	 41.37	0	115805..116053	-	82	73667660	rplW	Mbar_A0108	-	50S ribosomal protein L23
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.