IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 29.81	-2	494518..496050	+	510	73667960	-	Mbar_A0412	-	hypothetical protein
402	 32.99	-1	496273..497142	+	289	73667961	-	Mbar_A0413	-	hypothetical protein
403	 34.49	-1	497197..498669	+	490	73667962	-	Mbar_A0414	-	hypothetical protein
404	 39.34	0	499764..500678	+	304	73667963	-	Mbar_A0415	-	hypothetical protein
405	 39.10	0	501106..502146	-	346	73667964	-	Mbar_A0416	-	hypothetical protein
406	 36.41	-1	503269..504048	-	259	73667965	-	Mbar_A0417	-	hypothetical protein
407	 40.44	0	504506..504730	-	74	73667966	-	Mbar_A0418	-	hypothetical protein
408	 40.11	0	504814..505182	-	122	73667967	-	Mbar_A0419	-	hypothetical protein
409	 52.96	+2	506086..507114	+	342	73667968	-	Mbar_A0420	-	F420-dependent glucose-6-phosphate dehydrogenase
410	 50.05	+1	507143..509326	+	727	73667969	-	Mbar_A0421	-	hypothetical protein
411	 42.69	0	509307..509648	+	113	73667970	-	Mbar_A0422	-	hypothetical protein
412	 54.70	+2	509684..510778	+	364	73667971	-	Mbar_A0423	-	FMN oxidoreductase protein
413	 54.67	+2	510961..511185	+	74	73667972	-	Mbar_A0424	-	hypothetical protein
414	 50.57	+1	511626..513122	+	498	73667973	fumC	Mbar_A0425	-	fumarate hydratase
415	 35.63	-1	515146..515886	-	246	73667974	-	Mbar_A0426	-	hypothetical protein
416	 32.56	-1	516198..517106	-	302	73667975	-	Mbar_A0427	-	hypothetical protein
417	 52.91	+2	518082..519833	+	583	73667976	-	Mbar_A0428	-	acetolactate synthase
418	 47.45	+1	520348..521757	-	469	73667977	-	Mbar_A0429	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
419	 50.34	+1	521761..523077	-	438	73667978	-	Mbar_A0430	-	acetyl-CoA decarbonylase/synthase complex subunit delta
420	 42.65	0	523658..524419	-	253	73667979	-	Mbar_A0431	-	carbon-monoxide dehydrogenase accessory protein
421	 47.57	+1	524476..525894	-	472	73667980	-	Mbar_A0432	-	acetyl-CoA decarbonylase/synthase complex subunit beta
422	 46.78	+1	525919..526431	-	170	73667981	-	Mbar_A0433	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
423	 50.85	+1	526434..528854	-	806	73667982	-	Mbar_A0434	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
424	 41.81	0	531749..532255	+	168	73667983	-	Mbar_A0435	-	HTH DNA-binding protein
425	 41.09	0	533281..533538	-	85	73667984	-	Mbar_A0436	-	hypothetical protein
426	 31.01	-2	533732..534463	-	243	73667985	-	Mbar_A0437	-	transposase, putative
427	 46.23	0	535540..537252	-	570	73667986	-	Mbar_A0438	-	acetolactate synthase large subunit
428	 28.79	-2	538536..538931	+	131	73667987	-	Mbar_A0439	-	hypothetical protein
429	 39.63	0	539581..539850	-	89	73667988	-	Mbar_A0440	-	hypothetical protein
430	 33.02	-1	540969..541283	+	104	73667989	-	Mbar_A0441	-	hypothetical protein
431	 35.69	-1	541280..541534	+	84	73667990	-	Mbar_A0442	-	hypothetical protein
432	 38.05	0	542032..542328	-	98	73667991	-	Mbar_A0444	-	nucleotidyltransferase
433	 37.82	0	544183..544650	-	155	73667992	-	Mbar_A0445	-	transposase
434	 27.74	-2	544796..545296	-	166	73667993	-	Mbar_A0446	-	hypothetical protein
435	 31.06	-2	545587..546510	-	307	73667994	-	Mbar_A0447	-	hypothetical protein
436	 28.98	-2	546707..547579	+	290	73667995	-	Mbar_A0448	-	hypothetical protein
437	 53.08	+2	547965..548840	-	291	73667996	-	Mbar_A0449	-	coenzyme F420-reducing hydrogenase subunit beta
438	 53.06	+2	548833..549714	-	293	73667997	-	Mbar_A0450	-	coenzyme F420-reducing hydrogenase, gamma subunit
439	 51.67	+2	549701..550180	-	159	73667998	-	Mbar_A0451	-	coenzyme F420-reducing hydrogenase, delta subunit
440	 53.17	+2	550186..551556	-	456	73667999	-	Mbar_A0452	-	coenzyme F420-reducing hydrogenase, alpha subunit
441	 21.32	-2	551705..551962	+	85	73668000	-	Mbar_A0453	-	hypothetical protein
442	 46.67	+1	552991..553440	+	149	73668001	-	Mbar_A0454	-	30S ribosomal protein S19e
443	 48.24	+1	553561..553929	+	122	73668002	-	Mbar_A0455	-	hypothetical protein
444	 44.01	0	553935..554552	+	205	73668003	-	Mbar_A0456	-	ATP-binding protein
445	 46.79	+1	554835..554990	+	51	73668004	rpl39e	Mbar_A0457	-	50S ribosomal protein L39e
446	 45.19	0	555009..555278	+	89	73668005	-	Mbar_A0458	-	50S ribosomal protein L31e
447	 47.58	+1	555311..555970	+	219	73668006	-	Mbar_A0459	-	translation initiation factor IF-6
448	 38.62	0	556008..556196	+	62	73668007	rplX	Mbar_A0460	-	50S ribosomal protein LX
449	 48.05	+1	556202..556636	+	144	73668008	-	Mbar_A0461	-	prefoldin subunit alpha
450	 43.74	0	556748..558016	+	422	73668009	-	Mbar_A0462	-	signal recognition particle-docking protein FtsY
451	 47.01	+1	558137..558889	-	250	73668010	-	Mbar_A0463	-	ubiquinone/menaquinone biosynthesis methyltransferase
452	 44.87	0	558905..559684	-	259	73668011	-	Mbar_A0464	-	ubiquinone/menaquinone biosynthesis methyltransferase
453	 47.37	+1	559687..560484	-	265	73668012	-	Mbar_A0465	-	Fe(III) dicitrate ABC transporter, ATP-binding protein
454	 49.14	+1	560481..561524	-	347	73668013	-	Mbar_A0466	-	Fe(III) dicitrate ABC transporter, permease
455	 44.76	0	561555..562709	-	384	73668014	-	Mbar_A0467	-	Fe(III) dicitrate ABC transporter, permease
456	 42.53	0	563677..564426	+	249	73668015	-	Mbar_A0468	-	hypothetical protein
457	 40.22	0	564692..565621	+	309	73668016	-	Mbar_A0469	-	nickel ABC transporter, permease protein
458	 43.07	0	565631..566503	+	290	73668017	-	Mbar_A0470	-	nickel ABC transporter, permease protein
459	 44.90	0	566487..567299	+	270	73668018	-	Mbar_A0471	-	nickel ABC transporter, ATP-binding protein
460	 42.20	0	567311..568291	+	326	73668019	-	Mbar_A0472	-	nickel ABC transporter, ATP-binding protein
461	 44.28	0	568318..569934	+	538	73668020	-	Mbar_A0473	-	nickel ABC transporter, solute-binding protein
462	 41.50	0	569946..570704	+	252	73668021	-	Mbar_A0474	-	hypothetical protein
463	 39.78	0	571073..571258	-	61	73668022	-	Mbar_A0475	-	stress-responsive transcriptional regulator
464	 30.67	-2	571794..572468	-	224	73668023	-	Mbar_A0476	-	serine O-acetyltransferase
465	 41.85	0	572930..574021	-	363	73668024	-	Mbar_A0477	-	hypothetical protein
466	 43.80	0	574059..575042	-	327	73668025	-	Mbar_A0478	-	hypothetical protein
467	 41.45	0	575482..576171	+	229	73668026	-	Mbar_A0479	-	peroxiredoxin
468	 47.62	+1	576445..577263	-	272	73668027	-	Mbar_A0480	-	pyrroline-5-carboxylate reductase
469	 42.01	0	577486..578706	-	406	73668028	-	Mbar_A0481	-	gamma-glutamyl kinase
470	 43.90	0	578787..580130	-	447	73668029	-	Mbar_A0482	-	glutamate-5-semialdehyde dehydrogenase
471	 40.00	0	581397..581801	+	134	73668030	-	Mbar_A0483	-	hypothetical protein
472	 38.43	0	581945..582376	-	143	73668031	-	Mbar_A0484	-	hypothetical protein
473	 38.94	0	582517..582819	-	100	73668032	-	Mbar_A0485	-	hypothetical protein
474	 42.52	0	583700..584809	+	369	73668033	-	Mbar_A0486	-	chlorohydrolase family protein
475	 44.59	0	584828..585280	+	150	73668034	-	Mbar_A0487	-	universal stress protein
476	 44.11	0	585312..586220	+	302	73668035	-	Mbar_A0488	-	hypothetical protein
477	 43.20	0	586436..587134	+	232	73668036	-	Mbar_A0489	-	hypothetical protein
478	 36.65	-1	587285..587797	-	170	73668037	-	Mbar_A0490	-	hypothetical protein
479	 43.86	0	588372..589112	-	246	73668038	-	Mbar_A0491	-	hypothetical protein
480	 43.33	0	589441..589620	+	59	73668039	-	Mbar_A0492	-	hypothetical protein
481	 40.65	0	589825..590193	-	122	73668040	-	Mbar_A0493	-	camphor resistance protein CrcB
482	 41.99	0	590198..590578	-	126	73668041	-	Mbar_A0494	-	camphor resistance protein CrcB
483	 47.57	+1	591021..592214	-	397	73668042	-	Mbar_A0495	-	molybdenum cofactor biosynthesis protein MoeA2
484	 43.20	0	592235..592528	-	97	73668043	-	Mbar_A0496	-	molybdopterin converting factor small subunit
485	 39.87	0	592608..594260	+	550	73668044	-	Mbar_A0497	-	hypothetical protein
486	 39.90	0	594471..595094	+	207	73668045	-	Mbar_A0498	-	hypothetical protein
487	 42.05	0	595349..596518	+	389	73668046	-	Mbar_A0499	-	NaH antiporter protein
488	 43.83	0	596709..599453	-	914	73668047	-	Mbar_A0500	-	cation-transporting ATPase
489	 43.15	0	599740..601053	+	437	73668048	-	Mbar_A0501	-	hypothetical protein
490	 45.42	0	601612..601884	+	90	73668049	-	Mbar_A0502	-	hypothetical protein
491	 47.66	+1	602097..603527	-	476	73668050	-	Mbar_A0503	-	aldehyde dehydrogenase (NAD(P)+)
492	 40.87	0	603929..606118	+	729	73668051	-	Mbar_A0504	-	hypothetical protein
493	 44.23	0	606242..607966	+	574	73668052	-	Mbar_A0505	-	dolichol-P-glucose synthetase
494	 42.58	0	609329..609685	+	118	73668053	-	Mbar_A0506	-	ArsR family transcriptional regulator
495	 40.19	0	609972..610394	-	140	73668054	-	Mbar_A0507	-	CopG family transcriptional regulator
496	 47.08	+1	611136..612503	-	455	73668055	-	Mbar_A0508	-	coenzyme F390 synthetase
497	 44.88	0	612804..613574	-	256	73668056	-	Mbar_A0509	-	iron compounds ABC transporter, ATP-binding protein
498	 44.12	0	613574..614593	-	339	73668057	-	Mbar_A0510	-	iron compounds ABC transporter, permease protein
499	 43.03	0	614586..616358	-	590	73668058	-	Mbar_A0511	-	hypothetical protein
500	 45.67	0	616362..616985	-	207	73668059	-	Mbar_A0512	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.