IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
358	 42.41	0	431073..433583	-	836	73667917	-	Mbar_A0368	-	oligosaccharyl transferase
359	 38.98	0	434472..435569	+	365	73667918	-	Mbar_A0369	-	mannosyltransferase
360	 32.94	-1	435660..436427	+	255	73667919	-	Mbar_A0370	-	putative ABC-2 type transport system permease protein
361	 38.77	0	436452..437684	+	410	73667920	-	Mbar_A0371	-	putative ABC-2 type transport system ATP-binding protein
362	 36.83	-1	438111..441368	+	1085	73667921	-	Mbar_A0372	-	hypothetical protein
363	 37.69	0	441460..442629	+	389	73667922	-	Mbar_A0373	-	hexosyltransferase
364	 34.19	-1	442632..443687	+	351	73667923	-	Mbar_A0374	-	glycosyltransferase
365	 37.17	0	443684..444856	+	390	73667924	-	Mbar_A0375	-	hexosyltransferase
366	 38.97	0	445726..446133	-	135	73667925	-	Mbar_A0376	-	hypothetical protein
367	 40.42	0	446983..447222	-	79	73667926	-	Mbar_A0377	-	hypothetical protein
368	 45.12	0	447685..447930	-	81	73667927	-	Mbar_A0378	-	A1AO H+ ATPase subunit K
369	 39.15	0	448643..449896	+	417	73667928	-	Mbar_A0380	-	hypothetical protein
370	 42.54	0	449928..450383	-	151	73667929	-	Mbar_A0381	-	hypothetical protein
371	 45.75	0	450601..452904	-	767	73667930	-	Mbar_A0382	-	hydrogenase maturation protein
372	 42.42	0	453184..453348	-	54	73667931	-	Mbar_A0383	-	hypothetical protein
373	 43.27	0	453365..453988	-	207	73667932	-	Mbar_A0384	-	V-type ATP synthase subunit D
374	 49.39	+1	453994..455376	-	460	73667933	-	Mbar_A0385	-	V-type ATP synthase subunit B
375	 48.99	+1	455379..457115	-	578	73667934	-	Mbar_A0386	-	V-type ATP synthase subunit A
376	 43.89	0	457106..457408	-	100	73667935	-	Mbar_A0387	-	V-type ATP synthase subunit F
377	 41.46	0	457408..458490	-	360	73667936	-	Mbar_A0388	-	V-type ATP synthase subunit C
378	 41.12	0	458497..459048	-	183	73667937	-	Mbar_A0389	-	V-type ATP synthase subunit E
379	 45.53	0	459242..459487	-	81	73667938	-	Mbar_A0390	-	A1AO H+ ATPase subunit K
380	 41.96	0	459492..461426	-	644	73667939	-	Mbar_A0391	-	V-type ATP synthase subunit I
381	 42.42	0	461419..461748	-	109	73667940	-	Mbar_A0392	-	H(+)-transporting ATP synthase, subunit H
382	 44.33	0	462503..463684	-	393	73667941	-	Mbar_A0393	-	metallo cofactor biosynthesis protein
383	 41.49	0	463836..464693	-	285	73667942	-	Mbar_A0394	-	polyprenyl synthetase
384	 43.28	0	467271..468818	-	515	73667943	-	Mbar_A0395	-	hypothetical protein
385	 41.71	0	468919..469443	-	174	73667944	-	Mbar_A0396	-	endonuclease III
386	 47.36	+1	469578..470525	-	315	73667945	-	Mbar_A0397	-	ADP-ribosylglycohydrolase
387	 41.09	0	471541..472713	-	390	73667946	-	Mbar_A0398	-	hypothetical protein
388	 31.40	-2	473154..473723	+	189	73667947	-	Mbar_A0399	-	hypothetical protein
389	 47.10	+1	474343..475584	-	413	73667948	-	Mbar_A0400	-	proteasome-activating nucleotidase
390	 37.80	0	476854..477099	+	81	73667949	-	Mbar_A0401	-	hypothetical protein
391	 44.09	0	477081..477461	+	126	73667950	-	Mbar_A0402	-	hypothetical protein
392	 43.84	0	477744..479018	+	424	73667951	-	Mbar_A0403	-	adenylosuccinate synthetase
393	 42.72	0	479284..482832	-	1182	73667952	-	Mbar_A0404	-	hypothetical protein
394	 52.15	+2	483434..484645	-	403	73667953	-	Mbar_A0405	-	transporter
395	 43.17	0	484883..487717	-	944	73667954	-	Mbar_A0406	-	cation-transporting ATPase
396	 37.50	0	488993..489280	-	95	73667955	-	Mbar_A0407	-	hypothetical protein
397	 39.83	0	489597..490319	+	240	73667956	-	Mbar_A0408	-	peptidoglycan GlcNAc deacetylase
398	 37.98	0	490501..491748	-	415	73667957	-	Mbar_A0409	-	peptide chain release factor 1
399	 42.33	0	492434..493000	+	188	73667958	-	Mbar_A0410	-	tetrahydromethanopterin S-methyltransferase subunit A
400	 35.69	-1	493367..493918	+	183	73667959	-	Mbar_A0411	-	hypothetical protein
401	 29.81	-2	494518..496050	+	510	73667960	-	Mbar_A0412	-	hypothetical protein
402	 32.99	-1	496273..497142	+	289	73667961	-	Mbar_A0413	-	hypothetical protein
403	 34.49	-1	497197..498669	+	490	73667962	-	Mbar_A0414	-	hypothetical protein
404	 39.34	0	499764..500678	+	304	73667963	-	Mbar_A0415	-	hypothetical protein
405	 39.10	0	501106..502146	-	346	73667964	-	Mbar_A0416	-	hypothetical protein
406	 36.41	-1	503269..504048	-	259	73667965	-	Mbar_A0417	-	hypothetical protein
407	 40.44	0	504506..504730	-	74	73667966	-	Mbar_A0418	-	hypothetical protein
408	 40.11	0	504814..505182	-	122	73667967	-	Mbar_A0419	-	hypothetical protein
409	 52.96	+2	506086..507114	+	342	73667968	-	Mbar_A0420	-	F420-dependent glucose-6-phosphate dehydrogenase
410	 50.05	+1	507143..509326	+	727	73667969	-	Mbar_A0421	-	hypothetical protein
411	 42.69	0	509307..509648	+	113	73667970	-	Mbar_A0422	-	hypothetical protein
412	 54.70	+2	509684..510778	+	364	73667971	-	Mbar_A0423	-	FMN oxidoreductase protein
413	 54.67	+2	510961..511185	+	74	73667972	-	Mbar_A0424	-	hypothetical protein
414	 50.57	+1	511626..513122	+	498	73667973	fumC	Mbar_A0425	-	fumarate hydratase
415	 35.63	-1	515146..515886	-	246	73667974	-	Mbar_A0426	-	hypothetical protein
416	 32.56	-1	516198..517106	-	302	73667975	-	Mbar_A0427	-	hypothetical protein
417	 52.91	+2	518082..519833	+	583	73667976	-	Mbar_A0428	-	acetolactate synthase
418	 47.45	+1	520348..521757	-	469	73667977	-	Mbar_A0429	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
419	 50.34	+1	521761..523077	-	438	73667978	-	Mbar_A0430	-	acetyl-CoA decarbonylase/synthase complex subunit delta
420	 42.65	0	523658..524419	-	253	73667979	-	Mbar_A0431	-	carbon-monoxide dehydrogenase accessory protein
421	 47.57	+1	524476..525894	-	472	73667980	-	Mbar_A0432	-	acetyl-CoA decarbonylase/synthase complex subunit beta
422	 46.78	+1	525919..526431	-	170	73667981	-	Mbar_A0433	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
423	 50.85	+1	526434..528854	-	806	73667982	-	Mbar_A0434	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
424	 41.81	0	531749..532255	+	168	73667983	-	Mbar_A0435	-	HTH DNA-binding protein
425	 41.09	0	533281..533538	-	85	73667984	-	Mbar_A0436	-	hypothetical protein
426	 31.01	-2	533732..534463	-	243	73667985	-	Mbar_A0437	-	transposase, putative
427	 46.23	0	535540..537252	-	570	73667986	-	Mbar_A0438	-	acetolactate synthase large subunit
428	 28.79	-2	538536..538931	+	131	73667987	-	Mbar_A0439	-	hypothetical protein
429	 39.63	0	539581..539850	-	89	73667988	-	Mbar_A0440	-	hypothetical protein
430	 33.02	-1	540969..541283	+	104	73667989	-	Mbar_A0441	-	hypothetical protein
431	 35.69	-1	541280..541534	+	84	73667990	-	Mbar_A0442	-	hypothetical protein
432	 38.05	0	542032..542328	-	98	73667991	-	Mbar_A0444	-	nucleotidyltransferase
433	 37.82	0	544183..544650	-	155	73667992	-	Mbar_A0445	-	transposase
434	 27.74	-2	544796..545296	-	166	73667993	-	Mbar_A0446	-	hypothetical protein
435	 31.06	-2	545587..546510	-	307	73667994	-	Mbar_A0447	-	hypothetical protein
436	 28.98	-2	546707..547579	+	290	73667995	-	Mbar_A0448	-	hypothetical protein
437	 53.08	+2	547965..548840	-	291	73667996	-	Mbar_A0449	-	coenzyme F420-reducing hydrogenase subunit beta
438	 53.06	+2	548833..549714	-	293	73667997	-	Mbar_A0450	-	coenzyme F420-reducing hydrogenase, gamma subunit
439	 51.67	+2	549701..550180	-	159	73667998	-	Mbar_A0451	-	coenzyme F420-reducing hydrogenase, delta subunit
440	 53.17	+2	550186..551556	-	456	73667999	-	Mbar_A0452	-	coenzyme F420-reducing hydrogenase, alpha subunit
441	 21.32	-2	551705..551962	+	85	73668000	-	Mbar_A0453	-	hypothetical protein
442	 46.67	+1	552991..553440	+	149	73668001	-	Mbar_A0454	-	30S ribosomal protein S19e
443	 48.24	+1	553561..553929	+	122	73668002	-	Mbar_A0455	-	hypothetical protein
444	 44.01	0	553935..554552	+	205	73668003	-	Mbar_A0456	-	ATP-binding protein
445	 46.79	+1	554835..554990	+	51	73668004	rpl39e	Mbar_A0457	-	50S ribosomal protein L39e
446	 45.19	0	555009..555278	+	89	73668005	-	Mbar_A0458	-	50S ribosomal protein L31e
447	 47.58	+1	555311..555970	+	219	73668006	-	Mbar_A0459	-	translation initiation factor IF-6
448	 38.62	0	556008..556196	+	62	73668007	rplX	Mbar_A0460	-	50S ribosomal protein LX
449	 48.05	+1	556202..556636	+	144	73668008	-	Mbar_A0461	-	prefoldin subunit alpha
450	 43.74	0	556748..558016	+	422	73668009	-	Mbar_A0462	-	signal recognition particle-docking protein FtsY
451	 47.01	+1	558137..558889	-	250	73668010	-	Mbar_A0463	-	ubiquinone/menaquinone biosynthesis methyltransferase
452	 44.87	0	558905..559684	-	259	73668011	-	Mbar_A0464	-	ubiquinone/menaquinone biosynthesis methyltransferase
453	 47.37	+1	559687..560484	-	265	73668012	-	Mbar_A0465	-	Fe(III) dicitrate ABC transporter, ATP-binding protein
454	 49.14	+1	560481..561524	-	347	73668013	-	Mbar_A0466	-	Fe(III) dicitrate ABC transporter, permease
455	 44.76	0	561555..562709	-	384	73668014	-	Mbar_A0467	-	Fe(III) dicitrate ABC transporter, permease
456	 42.53	0	563677..564426	+	249	73668015	-	Mbar_A0468	-	hypothetical protein
457	 40.22	0	564692..565621	+	309	73668016	-	Mbar_A0469	-	nickel ABC transporter, permease protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.