IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
337	 46.37	0	403960..404757	+	265	73667896	-	Mbar_A0347	-	nitrogenase iron protein subunit NifH
338	 48.35	+1	404859..406343	+	494	73667897	-	Mbar_A0348	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
339	 44.54	0	406711..407763	+	350	73667898	-	Mbar_A0349	-	tRNA splicing endonuclease
340	 44.95	0	407935..408330	+	131	73667899	-	Mbar_A0350	-	hypothetical protein
341	 44.93	0	408327..409637	+	436	73667900	-	Mbar_A0351	-	GTP-binding protein
342	 45.93	0	410500..411174	+	224	73667901	-	Mbar_A0352	-	isoleucyl-tRNA synthetase
343	 38.76	0	411346..411972	-	208	73667902	-	Mbar_A0353	-	ThiJ/PfpI family intracellular protease
344	 34.03	-1	412196..412624	-	142	73667903	-	Mbar_A0354	-	hypothetical protein
345	 34.74	-1	413474..415111	-	545	73667904	-	Mbar_A0355	-	transposase
346	 40.84	0	415576..415908	+	110	73667905	-	Mbar_A0356	-	hypothetical protein
347	 36.51	-1	416338..416526	-	62	73667906	-	Mbar_A0357	-	hypothetical protein
348	 41.60	0	416848..417210	+	120	73667907	-	Mbar_A0358	-	hypothetical protein
349	 45.35	0	417639..419969	+	776	73667908	-	Mbar_A0359	-	DNA repair protein
350	 44.81	0	419966..423190	+	1074	73667909	-	Mbar_A0360	-	chromosome segregation protein
351	 40.18	0	423336..424124	-	262	73667910	-	Mbar_A0361	-	hypothetical protein
352	 42.54	0	424694..425410	-	238	73667911	-	Mbar_A0362	-	hypothetical protein
353	 47.77	+1	425471..426322	-	283	73667912	-	Mbar_A0363	-	ribose-phosphate pyrophosphokinase
354	 46.37	0	426399..426866	-	155	73667913	moaC	Mbar_A0364	-	putative molybdenum cofactor biosynthesis protein C
355	 37.10	0	427137..427322	-	61	73667914	-	Mbar_A0365	-	hypothetical protein
356	 48.11	+1	427403..428911	-	502	73667915	-	Mbar_A0366	-	putative sugar kinase
357	 46.90	+1	429393..430859	+	488	73667916	-	Mbar_A0367	-	hypothetical protein
358	 42.41	0	431073..433583	-	836	73667917	-	Mbar_A0368	-	oligosaccharyl transferase
359	 38.98	0	434472..435569	+	365	73667918	-	Mbar_A0369	-	mannosyltransferase
360	 32.94	-1	435660..436427	+	255	73667919	-	Mbar_A0370	-	putative ABC-2 type transport system permease protein
361	 38.77	0	436452..437684	+	410	73667920	-	Mbar_A0371	-	putative ABC-2 type transport system ATP-binding protein
362	 36.83	-1	438111..441368	+	1085	73667921	-	Mbar_A0372	-	hypothetical protein
363	 37.69	0	441460..442629	+	389	73667922	-	Mbar_A0373	-	hexosyltransferase
364	 34.19	-1	442632..443687	+	351	73667923	-	Mbar_A0374	-	glycosyltransferase
365	 37.17	0	443684..444856	+	390	73667924	-	Mbar_A0375	-	hexosyltransferase
366	 38.97	0	445726..446133	-	135	73667925	-	Mbar_A0376	-	hypothetical protein
367	 40.42	0	446983..447222	-	79	73667926	-	Mbar_A0377	-	hypothetical protein
368	 45.12	0	447685..447930	-	81	73667927	-	Mbar_A0378	-	A1AO H+ ATPase subunit K
369	 39.15	0	448643..449896	+	417	73667928	-	Mbar_A0380	-	hypothetical protein
370	 42.54	0	449928..450383	-	151	73667929	-	Mbar_A0381	-	hypothetical protein
371	 45.75	0	450601..452904	-	767	73667930	-	Mbar_A0382	-	hydrogenase maturation protein
372	 42.42	0	453184..453348	-	54	73667931	-	Mbar_A0383	-	hypothetical protein
373	 43.27	0	453365..453988	-	207	73667932	-	Mbar_A0384	-	V-type ATP synthase subunit D
374	 49.39	+1	453994..455376	-	460	73667933	-	Mbar_A0385	-	V-type ATP synthase subunit B
375	 48.99	+1	455379..457115	-	578	73667934	-	Mbar_A0386	-	V-type ATP synthase subunit A
376	 43.89	0	457106..457408	-	100	73667935	-	Mbar_A0387	-	V-type ATP synthase subunit F
377	 41.46	0	457408..458490	-	360	73667936	-	Mbar_A0388	-	V-type ATP synthase subunit C
378	 41.12	0	458497..459048	-	183	73667937	-	Mbar_A0389	-	V-type ATP synthase subunit E
379	 45.53	0	459242..459487	-	81	73667938	-	Mbar_A0390	-	A1AO H+ ATPase subunit K
380	 41.96	0	459492..461426	-	644	73667939	-	Mbar_A0391	-	V-type ATP synthase subunit I
381	 42.42	0	461419..461748	-	109	73667940	-	Mbar_A0392	-	H(+)-transporting ATP synthase, subunit H
382	 44.33	0	462503..463684	-	393	73667941	-	Mbar_A0393	-	metallo cofactor biosynthesis protein
383	 41.49	0	463836..464693	-	285	73667942	-	Mbar_A0394	-	polyprenyl synthetase
384	 43.28	0	467271..468818	-	515	73667943	-	Mbar_A0395	-	hypothetical protein
385	 41.71	0	468919..469443	-	174	73667944	-	Mbar_A0396	-	endonuclease III
386	 47.36	+1	469578..470525	-	315	73667945	-	Mbar_A0397	-	ADP-ribosylglycohydrolase
387	 41.09	0	471541..472713	-	390	73667946	-	Mbar_A0398	-	hypothetical protein
388	 31.40	-2	473154..473723	+	189	73667947	-	Mbar_A0399	-	hypothetical protein
389	 47.10	+1	474343..475584	-	413	73667948	-	Mbar_A0400	-	proteasome-activating nucleotidase
390	 37.80	0	476854..477099	+	81	73667949	-	Mbar_A0401	-	hypothetical protein
391	 44.09	0	477081..477461	+	126	73667950	-	Mbar_A0402	-	hypothetical protein
392	 43.84	0	477744..479018	+	424	73667951	-	Mbar_A0403	-	adenylosuccinate synthetase
393	 42.72	0	479284..482832	-	1182	73667952	-	Mbar_A0404	-	hypothetical protein
394	 52.15	+2	483434..484645	-	403	73667953	-	Mbar_A0405	-	transporter
395	 43.17	0	484883..487717	-	944	73667954	-	Mbar_A0406	-	cation-transporting ATPase
396	 37.50	0	488993..489280	-	95	73667955	-	Mbar_A0407	-	hypothetical protein
397	 39.83	0	489597..490319	+	240	73667956	-	Mbar_A0408	-	peptidoglycan GlcNAc deacetylase
398	 37.98	0	490501..491748	-	415	73667957	-	Mbar_A0409	-	peptide chain release factor 1
399	 42.33	0	492434..493000	+	188	73667958	-	Mbar_A0410	-	tetrahydromethanopterin S-methyltransferase subunit A
400	 35.69	-1	493367..493918	+	183	73667959	-	Mbar_A0411	-	hypothetical protein
401	 29.81	-2	494518..496050	+	510	73667960	-	Mbar_A0412	-	hypothetical protein
402	 32.99	-1	496273..497142	+	289	73667961	-	Mbar_A0413	-	hypothetical protein
403	 34.49	-1	497197..498669	+	490	73667962	-	Mbar_A0414	-	hypothetical protein
404	 39.34	0	499764..500678	+	304	73667963	-	Mbar_A0415	-	hypothetical protein
405	 39.10	0	501106..502146	-	346	73667964	-	Mbar_A0416	-	hypothetical protein
406	 36.41	-1	503269..504048	-	259	73667965	-	Mbar_A0417	-	hypothetical protein
407	 40.44	0	504506..504730	-	74	73667966	-	Mbar_A0418	-	hypothetical protein
408	 40.11	0	504814..505182	-	122	73667967	-	Mbar_A0419	-	hypothetical protein
409	 52.96	+2	506086..507114	+	342	73667968	-	Mbar_A0420	-	F420-dependent glucose-6-phosphate dehydrogenase
410	 50.05	+1	507143..509326	+	727	73667969	-	Mbar_A0421	-	hypothetical protein
411	 42.69	0	509307..509648	+	113	73667970	-	Mbar_A0422	-	hypothetical protein
412	 54.70	+2	509684..510778	+	364	73667971	-	Mbar_A0423	-	FMN oxidoreductase protein
413	 54.67	+2	510961..511185	+	74	73667972	-	Mbar_A0424	-	hypothetical protein
414	 50.57	+1	511626..513122	+	498	73667973	fumC	Mbar_A0425	-	fumarate hydratase
415	 35.63	-1	515146..515886	-	246	73667974	-	Mbar_A0426	-	hypothetical protein
416	 32.56	-1	516198..517106	-	302	73667975	-	Mbar_A0427	-	hypothetical protein
417	 52.91	+2	518082..519833	+	583	73667976	-	Mbar_A0428	-	acetolactate synthase
418	 47.45	+1	520348..521757	-	469	73667977	-	Mbar_A0429	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
419	 50.34	+1	521761..523077	-	438	73667978	-	Mbar_A0430	-	acetyl-CoA decarbonylase/synthase complex subunit delta
420	 42.65	0	523658..524419	-	253	73667979	-	Mbar_A0431	-	carbon-monoxide dehydrogenase accessory protein
421	 47.57	+1	524476..525894	-	472	73667980	-	Mbar_A0432	-	acetyl-CoA decarbonylase/synthase complex subunit beta
422	 46.78	+1	525919..526431	-	170	73667981	-	Mbar_A0433	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
423	 50.85	+1	526434..528854	-	806	73667982	-	Mbar_A0434	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
424	 41.81	0	531749..532255	+	168	73667983	-	Mbar_A0435	-	HTH DNA-binding protein
425	 41.09	0	533281..533538	-	85	73667984	-	Mbar_A0436	-	hypothetical protein
426	 31.01	-2	533732..534463	-	243	73667985	-	Mbar_A0437	-	transposase, putative
427	 46.23	0	535540..537252	-	570	73667986	-	Mbar_A0438	-	acetolactate synthase large subunit
428	 28.79	-2	538536..538931	+	131	73667987	-	Mbar_A0439	-	hypothetical protein
429	 39.63	0	539581..539850	-	89	73667988	-	Mbar_A0440	-	hypothetical protein
430	 33.02	-1	540969..541283	+	104	73667989	-	Mbar_A0441	-	hypothetical protein
431	 35.69	-1	541280..541534	+	84	73667990	-	Mbar_A0442	-	hypothetical protein
432	 38.05	0	542032..542328	-	98	73667991	-	Mbar_A0444	-	nucleotidyltransferase
433	 37.82	0	544183..544650	-	155	73667992	-	Mbar_A0445	-	transposase
434	 27.74	-2	544796..545296	-	166	73667993	-	Mbar_A0446	-	hypothetical protein
435	 31.06	-2	545587..546510	-	307	73667994	-	Mbar_A0447	-	hypothetical protein
436	 28.98	-2	546707..547579	+	290	73667995	-	Mbar_A0448	-	hypothetical protein
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.