version 1.0
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408 3606 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3461 33.63 -1 4606035..4606367 - 110 73671021 - Mbar_A3588 - hypothetical protein 3462 39.54 0 4607422..4608033 - 203 73671022 - Mbar_A3589 - superoxide dismutase 3463 44.63 0 4608547..4609599 + 350 73671023 - Mbar_A3590 - hypothetical protein 3464 37.56 0 4609775..4610176 - 133 73671024 - Mbar_A3591 - hypothetical protein 3465 39.18 0 4610425..4610766 - 113 73671025 - Mbar_A3592 - hypothetical protein 3466 43.62 0 4611365..4612501 + 378 73671026 - Mbar_A3593 - transmembrane protein 3467 45.82 0 4612595..4613371 + 258 73671027 - Mbar_A3594 - methylthioadenosine phosphorylase 3468 45.48 0 4614041..4616518 + 825 73671028 - Mbar_A3595 - ATP-dependent DNA helicase 3469 44.11 0 4616689..4617087 + 132 73671029 - Mbar_A3596 - hypothetical protein 3470 39.56 0 4617663..4617887 + 74 73671030 - Mbar_A3597 - small nuclear riboprotein-like protein 3471 41.90 0 4617920..4618339 + 139 73671031 - Mbar_A3598 - hypothetical protein 3472 39.19 0 4618969..4619190 + 73 73671032 - Mbar_A3599 - hypothetical protein 3473 46.03 0 4619860..4620678 - 272 73671033 - Mbar_A3600 - hypothetical protein 3474 43.40 0 4620935..4621252 - 105 73671034 - Mbar_A3601 - SugE protein 3475 46.24 0 4621670..4622707 + 345 73671035 - Mbar_A3602 - formate acetyltransferase activating enzyme 3476 38.46 0 4622941..4623681 - 246 73671036 - Mbar_A3603 - hypothetical protein 3477 46.98 +1 4624260..4624904 + 214 73671037 - Mbar_A3604 - dimethylamine corrinoid protein 3478 43.61 0 4626418..4627944 + 508 73671038 - Mbar_A3606 - amino acid permease 3479 40.46 0 4628190..4629494 - 434 73671039 - Mbar_A3607 - hypothetical protein 3480 34.85 -1 4629811..4630008 - 65 73671040 - Mbar_A3608 - hypothetical protein 3481 43.28 0 4635736..4636107 + 123 73671041 - Mbar_A3611 - hypothetical protein 3482 43.30 0 4638867..4639508 - 213 73671042 - Mbar_A3612 - hypothetical protein 3483 47.88 +1 4639580..4642756 - 1058 73671043 ileS Mbar_A3613 - isoleucyl-tRNA synthetase 3484 42.03 0 4643378..4644343 - 321 73671044 - Mbar_A3614 - integral membrane protein 3485 45.61 0 4644544..4646229 - 561 73671045 - Mbar_A3615 - ribonucleotide reductase 3486 46.79 +1 4646508..4646975 - 155 73671046 - Mbar_A3616 - peptidyl-prolyl cis-trans isomerase 3487 39.46 0 4647987..4648508 - 173 73671047 - Mbar_A3617 - thioredoxin 3488 40.62 0 4649351..4649899 + 182 73671048 - Mbar_A3618 - hypothetical protein 3489 40.09 0 4650574..4651209 - 211 73671049 - Mbar_A3619 - hypothetical protein 3490 36.56 -1 4651788..4654046 - 752 73671050 - Mbar_A3620 - putative surface layer protein 3491 47.34 +1 4654365..4655171 + 268 73671051 - Mbar_A3621 - indole-3-glycerol phosphate synthase 3492 47.23 +1 4655443..4656723 + 426 73671052 - Mbar_A3622 - tryptophan synthase subunit beta 3493 47.35 +1 4656725..4657516 + 263 73671053 trpA Mbar_A3623 - tryptophan synthase subunit alpha 3494 47.68 +1 4657654..4658754 + 366 73671054 - Mbar_A3624 - anthranilate phosphoribosyltransferase 3495 49.09 +1 4658751..4659467 + 238 73671055 - Mbar_A3625 - phosphoribosylanthranilate isomerase 3496 44.89 0 4659454..4661097 + 547 73671056 - Mbar_A3626 - anthranilate synthase, component I 3497 45.94 0 4661265..4661867 + 200 73671057 - Mbar_A3627 - anthranilate synthase component II 3498 41.63 0 4661974..4662720 - 248 73671058 - Mbar_A3628 - hypothetical protein 3499 44.07 0 4663562..4664455 - 297 73671059 - Mbar_A3629 - hypothetical protein 3500 40.32 0 4664790..4666292 - 500 73671060 - Mbar_A3630 - cell surface glycoprotein (S-layer protein) 3501 42.57 0 4666625..4667263 - 212 73671061 - Mbar_A3631 - hypothetical protein 3502 42.43 0 4667617..4668462 - 281 73671062 - Mbar_A3632 - hypothetical protein 3503 44.95 0 4670549..4671202 - 217 73671063 - Mbar_A3634 - monomethylamine corrinoid protein 3504 40.40 0 4671720..4672511 - 263 73671064 - Mbar_A3635 - hypothetical protein 3505 44.11 0 4673041..4673643 + 200 73671065 - Mbar_A3636 - hypothetical protein 3506 45.31 0 4680050..4680817 + 255 73671066 - Mbar_A3637 - methanol corrinoid protein 3507 47.40 +1 4680830..4682215 + 461 73671067 - Mbar_A3638 - methanol:corrinoid methyltransferase 3508 44.61 0 4682663..4683682 - 339 73671068 - Mbar_A3639 - methylcobalamin:coenzyme M methyltransferase 3509 38.22 0 4684634..4686310 + 558 73671069 - Mbar_A3640 - phosphorylase 3510 44.16 0 4686791..4687945 + 384 73671070 - Mbar_A3641 - hypothetical protein 3511 41.43 0 4688246..4688776 + 176 73671071 - Mbar_A3642 - hypothetical protein 3512 42.78 0 4689330..4695269 + 1979 73671072 - Mbar_A3643 - TPR domain-containing protein 3513 42.97 0 4695386..4695883 - 165 73671073 - Mbar_A3644 - hypothetical protein 3514 26.80 -2 4696915..4698078 + 387 73671074 - Mbar_A3645 - hypothetical protein 3515 37.70 0 4698099..4700825 + 908 73671075 - Mbar_A3646 - hypothetical protein 3516 36.82 -1 4701163..4702080 - 305 73671076 - Mbar_A3647 - hypothetical protein 3517 40.80 0 4702082..4703179 - 365 73671077 - Mbar_A3648 - hypothetical protein 3518 44.42 0 4703857..4705011 - 384 73671078 - Mbar_A3649 - cation efflux system protein 3519 43.80 0 4706636..4706998 - 120 73671079 nac Mbar_A3650 - nascent polypeptide-associated complex protein 3520 45.48 0 4707069..4707389 - 106 73671080 - Mbar_A3651 - HesB protein 3521 38.87 0 4707683..4708837 - 384 73671081 - Mbar_A3652 - hypothetical protein 3522 43.99 0 4709027..4711006 + 659 73671082 - Mbar_A3653 - glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) 3523 44.87 0 4711074..4711463 + 129 73671083 - Mbar_A3654 - phosphoribosyl-AMP cyclohydrolase 3524 39.65 0 4711771..4712166 - 131 73671084 - Mbar_A3655 - hypothetical protein 3525 37.28 0 4713326..4714921 - 531 73671085 - Mbar_A3656 - transposase 3526 33.79 -1 4714988..4716073 - 361 73671086 - Mbar_A3657 - hypothetical protein 3527 41.81 0 4717042..4718244 - 400 73671087 - Mbar_A3658 - hypothetical protein 3528 43.38 0 4718417..4719202 - 261 73671088 - Mbar_A3659 - hypothetical protein 3529 41.49 0 4719957..4721219 + 420 73671089 - Mbar_A3660 - hypothetical protein 3530 43.92 0 4721473..4722105 - 210 73671090 - Mbar_A3661 - integral membrane protein 3531 40.90 0 4723039..4723395 - 118 73671091 - Mbar_A3663 - MarR family transcriptional regulator 3532 47.73 +1 4723754..4724413 + 219 73671092 - Mbar_A3664 - hypothetical protein 3533 44.54 0 4724918..4725256 + 112 73671093 - Mbar_A3665 - hypothetical protein 3534 45.51 0 4725306..4725650 + 114 73671094 - Mbar_A3666 - hypothetical protein 3535 38.93 0 4726119..4726547 + 142 73671095 - Mbar_A3667 - hypothetical protein 3536 37.25 0 4726647..4726748 + 33 73671096 - Mbar_A3668 - ferredoxin 3537 37.81 0 4726956..4727513 - 185 73671097 - Mbar_A3669 - hypothetical protein 3538 41.36 0 4727893..4728714 + 273 73671098 - Mbar_A3670 - hypothetical protein 3539 45.11 0 4729092..4729490 + 132 73671099 - Mbar_A3671 - carboxymuconolactone decarboxylase 3540 49.67 +1 4729956..4730873 - 305 73671100 - Mbar_A3672 - oligopeptide ABC transporter, ATP-binding protein 3541 48.88 +1 4730866..4731804 - 312 73671101 - Mbar_A3673 - oligopeptide ABC transporter, ATP-binding protein 3542 47.38 +1 4731806..4732645 - 279 73671102 - Mbar_A3674 - oligopeptide ABC transporter, permease 3543 47.74 +1 4732629..4733579 - 316 73671103 - Mbar_A3675 - oligopeptide ABC transporter, permease 3544 42.14 0 4733727..4734419 - 230 73671104 - Mbar_A3676 - UbiE/COQ5 methyltransferase 3545 44.66 0 4734431..4735993 - 520 73671105 - Mbar_A3677 - oligopeptide ABC transporter, oligopeptide-binding protein 3546 46.01 0 4736329..4737906 - 525 73671106 - Mbar_A3678 - oligopeptide ABC transporter, oligopeptide-binding protein 3547 39.86 0 4738829..4739563 + 244 73671107 - Mbar_A3679 - hypothetical protein 3548 43.79 0 4740161..4741681 + 506 73671108 - Mbar_A3680 - hypothetical protein 3549 32.03 -2 4742104..4742640 - 178 73671109 - Mbar_A3681 - hypothetical protein 3550 33.48 -1 4743461..4744150 - 229 73671110 - Mbar_A3682 - hypothetical protein 3551 35.76 -1 4744187..4745092 - 301 73671111 - Mbar_A3683 - hypothetical protein 3552 45.31 0 4745279..4745587 - 102 73671112 rps10p Mbar_A3684 - 30S ribosomal protein S10P 3553 48.78 +1 4745624..4746892 - 422 73671113 - Mbar_A3685 - elongation factor 1-alpha 3554 47.15 +1 4747245..4749437 - 730 73671114 - Mbar_A3686 - elongation factor EF-2 3555 46.95 +1 4749506..4750063 - 185 73671115 - Mbar_A3687 - 30S ribosomal protein S7P 3556 50.12 +1 4750069..4750497 - 142 73671116 rps12P Mbar_A3688 - 30S ribosomal protein S12P 3557 39.91 0 4750604..4751029 - 141 73671117 nusA Mbar_A3689 - transcription elongation factor NusA-like protein 3558 44.11 0 4751050..4751346 - 98 73671118 - Mbar_A3690 - 50S ribosomal protein L30e 3559 46.06 0 4751603..4752883 - 426 73671119 - Mbar_A3691 - DNA-directed RNA polymerase subunit A'' 3560 48.39 +1 4752883..4755525 - 880 73671120 - Mbar_A3692 - DNA-directed RNA polymerase subunit alpha 41.74 MEAN 4.78 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0