IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3458	 49.00	+1	4601232..4602335	-	367	73671018	-	Mbar_A3585	-	methylcobalamin:coenzyme M methyltransferase
3459	 40.25	0	4603232..4604287	+	351	73671019	-	Mbar_A3586	-	hypothetical protein
3460	 41.33	0	4604534..4605658	+	374	73671020	-	Mbar_A3587	-	hypothetical protein
3461	 33.63	-1	4606035..4606367	-	110	73671021	-	Mbar_A3588	-	hypothetical protein
3462	 39.54	0	4607422..4608033	-	203	73671022	-	Mbar_A3589	-	superoxide dismutase
3463	 44.63	0	4608547..4609599	+	350	73671023	-	Mbar_A3590	-	hypothetical protein
3464	 37.56	0	4609775..4610176	-	133	73671024	-	Mbar_A3591	-	hypothetical protein
3465	 39.18	0	4610425..4610766	-	113	73671025	-	Mbar_A3592	-	hypothetical protein
3466	 43.62	0	4611365..4612501	+	378	73671026	-	Mbar_A3593	-	transmembrane protein
3467	 45.82	0	4612595..4613371	+	258	73671027	-	Mbar_A3594	-	methylthioadenosine phosphorylase
3468	 45.48	0	4614041..4616518	+	825	73671028	-	Mbar_A3595	-	ATP-dependent DNA helicase
3469	 44.11	0	4616689..4617087	+	132	73671029	-	Mbar_A3596	-	hypothetical protein
3470	 39.56	0	4617663..4617887	+	74	73671030	-	Mbar_A3597	-	small nuclear riboprotein-like protein
3471	 41.90	0	4617920..4618339	+	139	73671031	-	Mbar_A3598	-	hypothetical protein
3472	 39.19	0	4618969..4619190	+	73	73671032	-	Mbar_A3599	-	hypothetical protein
3473	 46.03	0	4619860..4620678	-	272	73671033	-	Mbar_A3600	-	hypothetical protein
3474	 43.40	0	4620935..4621252	-	105	73671034	-	Mbar_A3601	-	SugE protein
3475	 46.24	0	4621670..4622707	+	345	73671035	-	Mbar_A3602	-	formate acetyltransferase activating enzyme
3476	 38.46	0	4622941..4623681	-	246	73671036	-	Mbar_A3603	-	hypothetical protein
3477	 46.98	+1	4624260..4624904	+	214	73671037	-	Mbar_A3604	-	dimethylamine corrinoid protein
3478	 43.61	0	4626418..4627944	+	508	73671038	-	Mbar_A3606	-	amino acid permease
3479	 40.46	0	4628190..4629494	-	434	73671039	-	Mbar_A3607	-	hypothetical protein
3480	 34.85	-1	4629811..4630008	-	65	73671040	-	Mbar_A3608	-	hypothetical protein
3481	 43.28	0	4635736..4636107	+	123	73671041	-	Mbar_A3611	-	hypothetical protein
3482	 43.30	0	4638867..4639508	-	213	73671042	-	Mbar_A3612	-	hypothetical protein
3483	 47.88	+1	4639580..4642756	-	1058	73671043	ileS	Mbar_A3613	-	isoleucyl-tRNA synthetase
3484	 42.03	0	4643378..4644343	-	321	73671044	-	Mbar_A3614	-	integral membrane protein
3485	 45.61	0	4644544..4646229	-	561	73671045	-	Mbar_A3615	-	ribonucleotide reductase
3486	 46.79	+1	4646508..4646975	-	155	73671046	-	Mbar_A3616	-	peptidyl-prolyl cis-trans isomerase
3487	 39.46	0	4647987..4648508	-	173	73671047	-	Mbar_A3617	-	thioredoxin
3488	 40.62	0	4649351..4649899	+	182	73671048	-	Mbar_A3618	-	hypothetical protein
3489	 40.09	0	4650574..4651209	-	211	73671049	-	Mbar_A3619	-	hypothetical protein
3490	 36.56	-1	4651788..4654046	-	752	73671050	-	Mbar_A3620	-	putative surface layer protein
3491	 47.34	+1	4654365..4655171	+	268	73671051	-	Mbar_A3621	-	indole-3-glycerol phosphate synthase
3492	 47.23	+1	4655443..4656723	+	426	73671052	-	Mbar_A3622	-	tryptophan synthase subunit beta
3493	 47.35	+1	4656725..4657516	+	263	73671053	trpA	Mbar_A3623	-	tryptophan synthase subunit alpha
3494	 47.68	+1	4657654..4658754	+	366	73671054	-	Mbar_A3624	-	anthranilate phosphoribosyltransferase
3495	 49.09	+1	4658751..4659467	+	238	73671055	-	Mbar_A3625	-	phosphoribosylanthranilate isomerase
3496	 44.89	0	4659454..4661097	+	547	73671056	-	Mbar_A3626	-	anthranilate synthase, component I
3497	 45.94	0	4661265..4661867	+	200	73671057	-	Mbar_A3627	-	anthranilate synthase component II
3498	 41.63	0	4661974..4662720	-	248	73671058	-	Mbar_A3628	-	hypothetical protein
3499	 44.07	0	4663562..4664455	-	297	73671059	-	Mbar_A3629	-	hypothetical protein
3500	 40.32	0	4664790..4666292	-	500	73671060	-	Mbar_A3630	-	cell surface glycoprotein (S-layer protein)
3501	 42.57	0	4666625..4667263	-	212	73671061	-	Mbar_A3631	-	hypothetical protein
3502	 42.43	0	4667617..4668462	-	281	73671062	-	Mbar_A3632	-	hypothetical protein
3503	 44.95	0	4670549..4671202	-	217	73671063	-	Mbar_A3634	-	monomethylamine corrinoid protein
3504	 40.40	0	4671720..4672511	-	263	73671064	-	Mbar_A3635	-	hypothetical protein
3505	 44.11	0	4673041..4673643	+	200	73671065	-	Mbar_A3636	-	hypothetical protein
3506	 45.31	0	4680050..4680817	+	255	73671066	-	Mbar_A3637	-	methanol corrinoid protein
3507	 47.40	+1	4680830..4682215	+	461	73671067	-	Mbar_A3638	-	methanol:corrinoid methyltransferase
3508	 44.61	0	4682663..4683682	-	339	73671068	-	Mbar_A3639	-	methylcobalamin:coenzyme M methyltransferase
3509	 38.22	0	4684634..4686310	+	558	73671069	-	Mbar_A3640	-	phosphorylase
3510	 44.16	0	4686791..4687945	+	384	73671070	-	Mbar_A3641	-	hypothetical protein
3511	 41.43	0	4688246..4688776	+	176	73671071	-	Mbar_A3642	-	hypothetical protein
3512	 42.78	0	4689330..4695269	+	1979	73671072	-	Mbar_A3643	-	TPR domain-containing protein
3513	 42.97	0	4695386..4695883	-	165	73671073	-	Mbar_A3644	-	hypothetical protein
3514	 26.80	-2	4696915..4698078	+	387	73671074	-	Mbar_A3645	-	hypothetical protein
3515	 37.70	0	4698099..4700825	+	908	73671075	-	Mbar_A3646	-	hypothetical protein
3516	 36.82	-1	4701163..4702080	-	305	73671076	-	Mbar_A3647	-	hypothetical protein
3517	 40.80	0	4702082..4703179	-	365	73671077	-	Mbar_A3648	-	hypothetical protein
3518	 44.42	0	4703857..4705011	-	384	73671078	-	Mbar_A3649	-	cation efflux system protein
3519	 43.80	0	4706636..4706998	-	120	73671079	nac	Mbar_A3650	-	nascent polypeptide-associated complex protein
3520	 45.48	0	4707069..4707389	-	106	73671080	-	Mbar_A3651	-	HesB protein
3521	 38.87	0	4707683..4708837	-	384	73671081	-	Mbar_A3652	-	hypothetical protein
3522	 43.99	0	4709027..4711006	+	659	73671082	-	Mbar_A3653	-	glycogen debranching enzyme-related protein (4-alpha-glucanotransferase)
3523	 44.87	0	4711074..4711463	+	129	73671083	-	Mbar_A3654	-	phosphoribosyl-AMP cyclohydrolase
3524	 39.65	0	4711771..4712166	-	131	73671084	-	Mbar_A3655	-	hypothetical protein
3525	 37.28	0	4713326..4714921	-	531	73671085	-	Mbar_A3656	-	transposase
3526	 33.79	-1	4714988..4716073	-	361	73671086	-	Mbar_A3657	-	hypothetical protein
3527	 41.81	0	4717042..4718244	-	400	73671087	-	Mbar_A3658	-	hypothetical protein
3528	 43.38	0	4718417..4719202	-	261	73671088	-	Mbar_A3659	-	hypothetical protein
3529	 41.49	0	4719957..4721219	+	420	73671089	-	Mbar_A3660	-	hypothetical protein
3530	 43.92	0	4721473..4722105	-	210	73671090	-	Mbar_A3661	-	integral membrane protein
3531	 40.90	0	4723039..4723395	-	118	73671091	-	Mbar_A3663	-	MarR family transcriptional regulator
3532	 47.73	+1	4723754..4724413	+	219	73671092	-	Mbar_A3664	-	hypothetical protein
3533	 44.54	0	4724918..4725256	+	112	73671093	-	Mbar_A3665	-	hypothetical protein
3534	 45.51	0	4725306..4725650	+	114	73671094	-	Mbar_A3666	-	hypothetical protein
3535	 38.93	0	4726119..4726547	+	142	73671095	-	Mbar_A3667	-	hypothetical protein
3536	 37.25	0	4726647..4726748	+	33	73671096	-	Mbar_A3668	-	ferredoxin
3537	 37.81	0	4726956..4727513	-	185	73671097	-	Mbar_A3669	-	hypothetical protein
3538	 41.36	0	4727893..4728714	+	273	73671098	-	Mbar_A3670	-	hypothetical protein
3539	 45.11	0	4729092..4729490	+	132	73671099	-	Mbar_A3671	-	carboxymuconolactone decarboxylase
3540	 49.67	+1	4729956..4730873	-	305	73671100	-	Mbar_A3672	-	oligopeptide ABC transporter, ATP-binding protein
3541	 48.88	+1	4730866..4731804	-	312	73671101	-	Mbar_A3673	-	oligopeptide ABC transporter, ATP-binding protein
3542	 47.38	+1	4731806..4732645	-	279	73671102	-	Mbar_A3674	-	oligopeptide ABC transporter, permease
3543	 47.74	+1	4732629..4733579	-	316	73671103	-	Mbar_A3675	-	oligopeptide ABC transporter, permease
3544	 42.14	0	4733727..4734419	-	230	73671104	-	Mbar_A3676	-	UbiE/COQ5 methyltransferase
3545	 44.66	0	4734431..4735993	-	520	73671105	-	Mbar_A3677	-	oligopeptide ABC transporter, oligopeptide-binding protein
3546	 46.01	0	4736329..4737906	-	525	73671106	-	Mbar_A3678	-	oligopeptide ABC transporter, oligopeptide-binding protein
3547	 39.86	0	4738829..4739563	+	244	73671107	-	Mbar_A3679	-	hypothetical protein
3548	 43.79	0	4740161..4741681	+	506	73671108	-	Mbar_A3680	-	hypothetical protein
3549	 32.03	-2	4742104..4742640	-	178	73671109	-	Mbar_A3681	-	hypothetical protein
3550	 33.48	-1	4743461..4744150	-	229	73671110	-	Mbar_A3682	-	hypothetical protein
3551	 35.76	-1	4744187..4745092	-	301	73671111	-	Mbar_A3683	-	hypothetical protein
3552	 45.31	0	4745279..4745587	-	102	73671112	rps10p	Mbar_A3684	-	30S ribosomal protein S10P
3553	 48.78	+1	4745624..4746892	-	422	73671113	-	Mbar_A3685	-	elongation factor 1-alpha
3554	 47.15	+1	4747245..4749437	-	730	73671114	-	Mbar_A3686	-	elongation factor EF-2
3555	 46.95	+1	4749506..4750063	-	185	73671115	-	Mbar_A3687	-	30S ribosomal protein S7P
3556	 50.12	+1	4750069..4750497	-	142	73671116	rps12P	Mbar_A3688	-	30S ribosomal protein S12P
3557	 39.91	0	4750604..4751029	-	141	73671117	nusA	Mbar_A3689	-	transcription elongation factor NusA-like protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.