IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
302	 35.32	-1	366851..367102	+	83	73667861	-	Mbar_A0312	-	hypothetical protein
303	 33.07	-1	367104..367490	+	128	73667862	-	Mbar_A0313	-	hypothetical protein
304	 37.58	0	367762..368397	+	211	73667863	-	Mbar_A0314	-	putative methyltransferase
305	 40.85	0	368622..369473	+	283	73667864	ubiA	Mbar_A0315	-	prenyltransferase
306	 44.62	0	369845..370801	+	318	73667865	-	Mbar_A0316	-	hypothetical protein
307	 47.12	+1	371251..371649	-	132	73667866	-	Mbar_A0317	-	hypothetical protein
308	 36.55	-1	372426..372767	+	113	73667867	-	Mbar_A0318	-	hypothetical protein
309	 33.44	-1	374732..375646	-	304	73667868	-	Mbar_A0319	-	transposase
310	 47.13	+1	376145..376405	+	86	73667869	-	Mbar_A0320	-	hypothetical protein
311	 43.24	0	378705..380966	+	753	73667870	-	Mbar_A0321	-	amino acid permease
312	 46.36	0	381490..381750	+	86	73667871	-	Mbar_A0322	-	hypothetical protein
313	 44.44	0	382339..382509	+	56	73667872	-	Mbar_A0323	-	putative cation transport regulator
314	 39.31	0	383213..384082	+	289	73667873	-	Mbar_A0324	-	hypothetical protein
315	 40.62	0	384336..384815	+	159	73667874	-	Mbar_A0325	-	hypothetical protein
316	 42.86	0	385649..385879	+	76	73667875	-	Mbar_A0326	-	gas vesicle synthesis protein GvpA
317	 42.86	0	385913..386143	+	76	73667876	-	Mbar_A0327	-	gas vesicle synthesis protein GvpA
318	 43.29	0	386177..386407	+	76	73667877	-	Mbar_A0328	-	gas vesicle synthesis protein GvpA
319	 35.58	-1	386764..387075	+	103	73667878	-	Mbar_A0329	-	hypothetical protein
320	 37.14	0	387749..389062	+	437	73667879	-	Mbar_A0330	-	hypothetical protein
321	 33.91	-1	389243..389587	+	114	73667880	-	Mbar_A0331	-	hypothetical protein
322	 33.79	-1	389974..390633	+	219	73667881	-	Mbar_A0332	-	GvpF
323	 33.33	-1	390663..390914	+	83	73667882	-	Mbar_A0333	-	hypothetical protein
324	 34.63	-1	390889..391197	+	102	73667883	-	Mbar_A0334	-	hypothetical protein
325	 44.12	0	391493..391909	+	138	73667884	-	Mbar_A0335	-	hypothetical protein
326	 38.26	0	391992..392681	+	229	73667885	-	Mbar_A0336	-	hypothetical protein
327	 38.71	0	392665..393036	+	123	73667886	-	Mbar_A0337	-	hypothetical protein
328	 36.69	-1	393221..394024	+	267	73667887	-	Mbar_A0338	-	GvpL
329	 39.93	0	394021..394566	+	181	73667888	-	Mbar_A0339	-	hypothetical protein
330	 28.79	-2	395669..396064	+	131	73667889	-	Mbar_A0340	-	PadR family transcriptional regulator
331	 36.38	-1	396211..396801	+	196	73667890	-	Mbar_A0341	-	hypothetical protein
332	 45.80	0	397171..397611	+	146	73667891	-	Mbar_A0342	-	hypothetical protein
333	 41.80	0	398007..399944	-	645	73667892	-	Mbar_A0343	-	cadmium efflux ATPase
334	 47.84	+1	400369..400761	+	130	73667893	-	Mbar_A0344	-	sirohydrochlorin cobaltochelatase
335	 46.12	0	400788..402374	+	528	73667894	-	Mbar_A0345	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
336	 45.82	0	402810..403922	+	370	73667895	-	Mbar_A0346	-	hypothetical protein
337	 46.37	0	403960..404757	+	265	73667896	-	Mbar_A0347	-	nitrogenase iron protein subunit NifH
338	 48.35	+1	404859..406343	+	494	73667897	-	Mbar_A0348	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
339	 44.54	0	406711..407763	+	350	73667898	-	Mbar_A0349	-	tRNA splicing endonuclease
340	 44.95	0	407935..408330	+	131	73667899	-	Mbar_A0350	-	hypothetical protein
341	 44.93	0	408327..409637	+	436	73667900	-	Mbar_A0351	-	GTP-binding protein
342	 45.93	0	410500..411174	+	224	73667901	-	Mbar_A0352	-	isoleucyl-tRNA synthetase
343	 38.76	0	411346..411972	-	208	73667902	-	Mbar_A0353	-	ThiJ/PfpI family intracellular protease
344	 34.03	-1	412196..412624	-	142	73667903	-	Mbar_A0354	-	hypothetical protein
345	 34.74	-1	413474..415111	-	545	73667904	-	Mbar_A0355	-	transposase
346	 40.84	0	415576..415908	+	110	73667905	-	Mbar_A0356	-	hypothetical protein
347	 36.51	-1	416338..416526	-	62	73667906	-	Mbar_A0357	-	hypothetical protein
348	 41.60	0	416848..417210	+	120	73667907	-	Mbar_A0358	-	hypothetical protein
349	 45.35	0	417639..419969	+	776	73667908	-	Mbar_A0359	-	DNA repair protein
350	 44.81	0	419966..423190	+	1074	73667909	-	Mbar_A0360	-	chromosome segregation protein
351	 40.18	0	423336..424124	-	262	73667910	-	Mbar_A0361	-	hypothetical protein
352	 42.54	0	424694..425410	-	238	73667911	-	Mbar_A0362	-	hypothetical protein
353	 47.77	+1	425471..426322	-	283	73667912	-	Mbar_A0363	-	ribose-phosphate pyrophosphokinase
354	 46.37	0	426399..426866	-	155	73667913	moaC	Mbar_A0364	-	putative molybdenum cofactor biosynthesis protein C
355	 37.10	0	427137..427322	-	61	73667914	-	Mbar_A0365	-	hypothetical protein
356	 48.11	+1	427403..428911	-	502	73667915	-	Mbar_A0366	-	putative sugar kinase
357	 46.90	+1	429393..430859	+	488	73667916	-	Mbar_A0367	-	hypothetical protein
358	 42.41	0	431073..433583	-	836	73667917	-	Mbar_A0368	-	oligosaccharyl transferase
359	 38.98	0	434472..435569	+	365	73667918	-	Mbar_A0369	-	mannosyltransferase
360	 32.94	-1	435660..436427	+	255	73667919	-	Mbar_A0370	-	putative ABC-2 type transport system permease protein
361	 38.77	0	436452..437684	+	410	73667920	-	Mbar_A0371	-	putative ABC-2 type transport system ATP-binding protein
362	 36.83	-1	438111..441368	+	1085	73667921	-	Mbar_A0372	-	hypothetical protein
363	 37.69	0	441460..442629	+	389	73667922	-	Mbar_A0373	-	hexosyltransferase
364	 34.19	-1	442632..443687	+	351	73667923	-	Mbar_A0374	-	glycosyltransferase
365	 37.17	0	443684..444856	+	390	73667924	-	Mbar_A0375	-	hexosyltransferase
366	 38.97	0	445726..446133	-	135	73667925	-	Mbar_A0376	-	hypothetical protein
367	 40.42	0	446983..447222	-	79	73667926	-	Mbar_A0377	-	hypothetical protein
368	 45.12	0	447685..447930	-	81	73667927	-	Mbar_A0378	-	A1AO H+ ATPase subunit K
369	 39.15	0	448643..449896	+	417	73667928	-	Mbar_A0380	-	hypothetical protein
370	 42.54	0	449928..450383	-	151	73667929	-	Mbar_A0381	-	hypothetical protein
371	 45.75	0	450601..452904	-	767	73667930	-	Mbar_A0382	-	hydrogenase maturation protein
372	 42.42	0	453184..453348	-	54	73667931	-	Mbar_A0383	-	hypothetical protein
373	 43.27	0	453365..453988	-	207	73667932	-	Mbar_A0384	-	V-type ATP synthase subunit D
374	 49.39	+1	453994..455376	-	460	73667933	-	Mbar_A0385	-	V-type ATP synthase subunit B
375	 48.99	+1	455379..457115	-	578	73667934	-	Mbar_A0386	-	V-type ATP synthase subunit A
376	 43.89	0	457106..457408	-	100	73667935	-	Mbar_A0387	-	V-type ATP synthase subunit F
377	 41.46	0	457408..458490	-	360	73667936	-	Mbar_A0388	-	V-type ATP synthase subunit C
378	 41.12	0	458497..459048	-	183	73667937	-	Mbar_A0389	-	V-type ATP synthase subunit E
379	 45.53	0	459242..459487	-	81	73667938	-	Mbar_A0390	-	A1AO H+ ATPase subunit K
380	 41.96	0	459492..461426	-	644	73667939	-	Mbar_A0391	-	V-type ATP synthase subunit I
381	 42.42	0	461419..461748	-	109	73667940	-	Mbar_A0392	-	H(+)-transporting ATP synthase, subunit H
382	 44.33	0	462503..463684	-	393	73667941	-	Mbar_A0393	-	metallo cofactor biosynthesis protein
383	 41.49	0	463836..464693	-	285	73667942	-	Mbar_A0394	-	polyprenyl synthetase
384	 43.28	0	467271..468818	-	515	73667943	-	Mbar_A0395	-	hypothetical protein
385	 41.71	0	468919..469443	-	174	73667944	-	Mbar_A0396	-	endonuclease III
386	 47.36	+1	469578..470525	-	315	73667945	-	Mbar_A0397	-	ADP-ribosylglycohydrolase
387	 41.09	0	471541..472713	-	390	73667946	-	Mbar_A0398	-	hypothetical protein
388	 31.40	-2	473154..473723	+	189	73667947	-	Mbar_A0399	-	hypothetical protein
389	 47.10	+1	474343..475584	-	413	73667948	-	Mbar_A0400	-	proteasome-activating nucleotidase
390	 37.80	0	476854..477099	+	81	73667949	-	Mbar_A0401	-	hypothetical protein
391	 44.09	0	477081..477461	+	126	73667950	-	Mbar_A0402	-	hypothetical protein
392	 43.84	0	477744..479018	+	424	73667951	-	Mbar_A0403	-	adenylosuccinate synthetase
393	 42.72	0	479284..482832	-	1182	73667952	-	Mbar_A0404	-	hypothetical protein
394	 52.15	+2	483434..484645	-	403	73667953	-	Mbar_A0405	-	transporter
395	 43.17	0	484883..487717	-	944	73667954	-	Mbar_A0406	-	cation-transporting ATPase
396	 37.50	0	488993..489280	-	95	73667955	-	Mbar_A0407	-	hypothetical protein
397	 39.83	0	489597..490319	+	240	73667956	-	Mbar_A0408	-	peptidoglycan GlcNAc deacetylase
398	 37.98	0	490501..491748	-	415	73667957	-	Mbar_A0409	-	peptide chain release factor 1
399	 42.33	0	492434..493000	+	188	73667958	-	Mbar_A0410	-	tetrahydromethanopterin S-methyltransferase subunit A
400	 35.69	-1	493367..493918	+	183	73667959	-	Mbar_A0411	-	hypothetical protein
401	 29.81	-2	494518..496050	+	510	73667960	-	Mbar_A0412	-	hypothetical protein
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.