IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3343	 43.12	0	4444788..4445165	-	125	73670903	-	Mbar_A3465	-	30S ribosomal protein S8e
3344	 38.84	0	4446107..4446433	+	108	73670904	-	Mbar_A3466	-	hypothetical protein
3345	 46.23	0	4446799..4447488	+	229	73670905	-	Mbar_A3467	-	hypothetical protein
3346	 39.49	0	4447880..4448431	-	183	73670906	-	Mbar_A3468	-	multimeric flavodoxin WrbA family protein
3347	 38.26	0	4448424..4449032	-	202	73670907	-	Mbar_A3469	-	galactoside-O-acetyltransferase
3348	 41.92	0	4450089..4450589	+	166	73670908	-	Mbar_A3470	-	hypothetical protein
3349	 47.32	+1	4450778..4451392	+	204	73670909	-	Mbar_A3471	-	orotate phosphoribosyltransferase
3350	 45.05	0	4451959..4454091	-	710	73670910	-	Mbar_A3472	-	hypothetical protein
3351	 40.63	0	4454777..4455571	+	264	73670911	-	Mbar_A3473	-	SPFH domain-containing protein/band 7 family protein
3352	 42.44	0	4455616..4456944	+	442	73670912	-	Mbar_A3474	-	nodulation efficiency protein NfeD
3353	 46.29	0	4457199..4458533	-	444	73670913	-	Mbar_A3475	-	hypothetical protein
3354	 47.45	+1	4458729..4459337	-	202	73670914	hisH	Mbar_A3476	-	imidazole glycerol phosphate synthase subunit HisH
3355	 43.52	0	4459496..4459711	-	71	73670915	-	Mbar_A3477	-	hypothetical protein
3356	 34.24	-1	4460232..4461005	-	257	73670916	-	Mbar_A3478	-	hypothetical protein
3357	 44.24	0	4462681..4463166	+	161	73670917	-	Mbar_A3480	-	hypothetical protein
3358	 44.37	0	4463209..4463670	+	153	73670918	-	Mbar_A3481	-	hypothetical protein
3359	 39.48	0	4465553..4466170	+	205	73670919	-	Mbar_A3483	-	hypothetical protein
3360	 43.35	0	4466798..4467346	+	182	73670920	-	Mbar_A3484	-	hypothetical protein
3361	 48.40	+1	4467368..4469146	-	592	73670921	-	Mbar_A3485	-	multidrug efflux protein
3362	 43.59	0	4469152..4469619	-	155	73670922	-	Mbar_A3486	-	PadR family transcriptional regulator
3363	 41.96	0	4470204..4471061	-	285	73670923	-	Mbar_A3487	-	hypothetical protein
3364	 32.39	-1	4471651..4472073	+	140	73670924	-	Mbar_A3488	-	hypothetical protein
3365	 37.39	0	4472265..4473572	-	435	73670925	-	Mbar_A3489	-	transposase
3366	 46.54	+1	4473732..4475654	-	640	73670926	-	Mbar_A3490	-	ATPase
3367	 37.53	0	4475817..4477628	-	603	73670927	-	Mbar_A3491	-	potassium uptake protein Kup
3368	 44.03	0	4478390..4479847	+	485	73670928	-	Mbar_A3492	-	integral membrane protein
3369	 37.69	0	4480485..4480943	+	152	73670929	-	Mbar_A3493	-	MarR family transcriptional regulator
3370	 40.22	0	4482330..4484915	+	861	73670930	-	Mbar_A3494	-	hypothetical protein
3371	 33.22	-1	4485666..4486538	+	290	73670931	-	Mbar_A3495	-	hypothetical protein
3372	 30.62	-2	4486542..4487204	+	220	73670932	-	Mbar_A3496	-	hypothetical protein
3373	 42.75	0	4487852..4488265	+	137	73670933	-	Mbar_A3497	-	hypothetical protein
3374	 47.00	+1	4488461..4489894	-	477	73670934	-	Mbar_A3498	-	amidophosphoribosyltransferase
3375	 40.35	0	4489944..4490114	-	56	73670935	rpl37e	Mbar_A3499	-	50S ribosomal protein L37e
3376	 46.12	0	4490265..4490483	-	72	73670936	-	Mbar_A3500	-	small nuclear ribonucleoprotein
3377	 48.78	+1	4490945..4492291	+	448	73670937	-	Mbar_A3501	-	hydroxymethylpyrimidine kinase
3378	 29.41	-2	4492465..4492719	-	84	73670938	-	Mbar_A3502	-	hypothetical protein
3379	 46.57	+1	4492772..4494070	+	432	73670939	-	Mbar_A3503	-	tryptophan synthase subunit beta
3380	 41.67	0	4494668..4494895	-	75	73670940	-	Mbar_A3504	-	hypothetical protein
3381	 37.50	0	4495060..4495467	-	135	73670941	-	Mbar_A3505	-	hypothetical protein
3382	 37.99	0	4495954..4496361	-	135	73670942	-	Mbar_A3506	-	hypothetical protein
3383	 46.47	0	4496463..4497764	-	433	73670943	hisD	Mbar_A3507	-	histidinol dehydrogenase
3384	 47.63	+1	4498153..4500342	-	729	73670944	-	Mbar_A3508	-	ski2-like helicase
3385	 46.86	+1	4500573..4502339	-	588	73670945	-	Mbar_A3509	-	putative ATPase RIL
3386	 41.31	0	4503102..4504091	+	329	73670946	-	Mbar_A3510	-	hypothetical protein
3387	 47.30	+1	4505142..4506050	-	302	73670947	-	Mbar_A3512	-	ornithine carbamoyltransferase
3388	 45.08	0	4506377..4507678	-	433	73670948	-	Mbar_A3513	-	phosphoribosylamine--glycine ligase
3389	 41.16	0	4508146..4508541	+	131	73670949	-	Mbar_A3514	-	hypothetical protein
3390	 44.33	0	4508576..4509139	-	187	73670950	-	Mbar_A3515	-	orotate phosphoribosyltransferase
3391	 45.64	0	4509229..4509756	-	175	73670951	-	Mbar_A3516	-	hypothetical protein
3392	 33.74	-1	4509822..4510064	-	80	73670952	-	Mbar_A3517	-	hypothetical protein
3393	 47.17	+1	4511099..4512703	-	534	73670953	-	Mbar_A3518	-	CTP synthetase
3394	 38.84	0	4513420..4514163	-	247	73670954	-	Mbar_A3519	-	hypothetical protein
3395	 45.24	0	4514178..4514345	-	55	73670955	-	Mbar_A3520	-	hypothetical protein
3396	 25.17	-2	4516385..4516837	-	150	73670956	-	Mbar_A3522	-	hypothetical protein
3397	 29.52	-2	4516838..4517728	-	296	73670957	-	Mbar_A3523	-	hypothetical protein
3398	 35.05	-1	4518069..4518827	+	252	73670958	-	Mbar_A3524	-	hypothetical protein
3399	 49.44	+1	4520175..4522049	+	624	73670959	-	Mbar_A3525	-	carbon monoxide dehydrogenase
3400	 49.20	+1	4522075..4522572	+	165	73670960	-	Mbar_A3526	-	carbon-monoxide dehydrogenase, Fe-S subunit
3401	 41.89	0	4522761..4523216	+	151	73670961	-	Mbar_A3527	-	universal stress protein
3402	 42.60	0	4523351..4524289	+	312	73670962	-	Mbar_A3528	-	hypothetical protein
3403	 44.00	0	4525123..4525572	+	149	73670963	-	Mbar_A3529	-	universal stress protein
3404	 45.69	0	4525964..4527274	-	436	73670964	-	Mbar_A3530	-	PmbA/TldD family protein
3405	 46.56	+1	4527274..4528611	-	445	73670965	-	Mbar_A3531	-	PmbA/TldD family protein
3406	 47.26	+1	4528614..4530710	-	698	73670966	-	Mbar_A3532	-	ATP-dependent protease Lon
3407	 43.95	0	4531797..4532813	+	338	73670967	-	Mbar_A3533	-	hypothetical protein
3408	 39.53	0	4532920..4533258	-	112	73670968	-	Mbar_A3534	-	hypothetical protein
3409	 37.43	0	4533808..4537179	+	1123	73670969	-	Mbar_A3535	-	hypothetical protein
3410	 37.65	0	4537347..4537832	-	161	73670970	-	Mbar_A3536	-	putative sensory transduction histidine kinase
3411	 31.77	-2	4537996..4538187	+	63	73670971	-	Mbar_A3537	-	hypothetical protein
3412	 39.78	0	4538238..4540502	-	754	73670972	-	Mbar_A3538	-	hypothetical protein
3413	 42.72	0	4541541..4541753	-	70	73670973	-	Mbar_A3539	-	hypothetical protein
3414	 40.09	0	4541961..4542419	+	152	73670974	-	Mbar_A3540	-	hypothetical protein
3415	 47.16	+1	4542771..4544021	+	416	73670975	-	Mbar_A3541	-	L-threonine synthase
3416	 47.69	+1	4544112..4545260	+	382	73670976	-	Mbar_A3542	-	sulfopyruvate decarboxylase subunit alpha / sulfopyruvate decarboxylase subunit beta
3417	 29.68	-2	4545926..4546882	+	318	73670977	-	Mbar_A3543	-	hypothetical protein
3418	 25.17	-2	4546872..4547471	+	199	73670978	-	Mbar_A3544	-	hypothetical protein
3419	 27.75	-2	4547452..4549440	+	662	73670979	-	Mbar_A3545	-	hypothetical protein
3420	 46.24	0	4549741..4551057	-	438	73670980	-	Mbar_A3546	-	hypothetical protein
3421	 42.32	0	4551177..4551944	-	255	73670981	-	Mbar_A3547	-	hypothetical protein
3422	 43.66	0	4553840..4554052	+	70	73670982	-	Mbar_A3548	-	hypothetical protein
3423	 42.11	0	4554999..4555397	-	132	73670983	-	Mbar_A3549	-	hypothetical protein
3424	 43.12	0	4556236..4558053	-	605	73670984	-	Mbar_A3550	-	cobalt transport ATP-binding protein
3425	 41.44	0	4558139..4559002	+	287	73670985	-	Mbar_A3551	-	cobalt ABC transporter, permease protein
3426	 42.56	0	4559057..4560292	-	411	73670986	-	Mbar_A3552	-	hypothetical protein
3427	 42.90	0	4561346..4563133	+	595	73670987	-	Mbar_A3553	-	hypothetical protein
3428	 42.55	0	4563102..4564088	+	328	73670988	-	Mbar_A3554	-	cell surface glycoprotein
3429	 42.81	0	4564113..4564787	+	224	73670989	-	Mbar_A3555	-	ABC transporter, ATP-binding protein
3430	 47.15	+1	4565448..4565903	+	151	73670990	-	Mbar_A3556	-	hypothetical protein
3431	 37.96	0	4566359..4566574	+	71	73670991	-	Mbar_A3557	-	hypothetical protein
3432	 44.56	0	4566648..4566941	+	97	73670992	-	Mbar_A3558	-	ArsR family transcriptional regulator
3433	 43.18	0	4567129..4568001	+	290	73670993	-	Mbar_A3559	-	hypothetical protein
3434	 44.91	0	4568108..4568971	-	287	73670994	-	Mbar_A3560	-	MerR family transcriptional regulator
3435	 40.95	0	4570355..4571707	+	450	73670995	-	Mbar_A3561	-	glutathione reductase (NADPH)
3436	 43.80	0	4572422..4573663	+	413	73670996	pgk	Mbar_A3562	-	phosphoglycerate kinase
3437	 40.98	0	4574161..4574709	+	182	73670997	-	Mbar_A3563	-	rubrerythrin
3438	 45.03	0	4575034..4576050	+	338	73670998	-	Mbar_A3564	-	glyceraldehyde-3-phosphate dehydrogenase
3439	 37.15	0	4576993..4577463	+	156	73670999	-	Mbar_A3565	-	universal stress protein
3440	 43.16	0	4578374..4580062	+	562	73671000	-	Mbar_A3566	-	dipeptide/oligopeptide-binding protein
3441	 43.74	0	4580046..4580900	+	284	73671001	-	Mbar_A3567	-	hypothetical protein
3442	 42.68	0	4580928..4581911	+	327	73671002	-	Mbar_A3568	-	oligopeptide ABC transporter, permease
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.