IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3301	 42.49	0	4387695..4389125	-	476	73670861	-	Mbar_A3423	-	trk system potassium uptake protein
3302	 44.10	0	4389181..4390527	-	448	73670862	trkA	Mbar_A3424	-	potassium transporter peripheral membrane component
3303	 41.76	0	4391026..4391844	-	272	73670863	-	Mbar_A3425	-	molybdenum ABC transporter, solute-binding protein
3304	 34.76	-1	4392270..4392902	-	210	73670864	-	Mbar_A3426	-	hypothetical protein
3305	 39.29	0	4393481..4394185	-	234	73670865	-	Mbar_A3427	-	ArsR family transcriptional regulator
3306	 35.13	-1	4394471..4395139	+	222	73670866	-	Mbar_A3428	-	cytochrome c-type biogenesis protein ccdA
3307	 41.46	0	4395450..4396901	-	483	73670867	-	Mbar_A3429	-	sodium transport protein
3308	 43.50	0	4396905..4398251	-	448	73670868	trkA	Mbar_A3430	-	potassium transporter peripheral membrane component
3309	 30.91	-2	4398590..4398919	+	109	73670869	-	Mbar_A3431	-	hypothetical protein
3310	 47.81	+1	4398991..4400157	-	388	73670870	-	Mbar_A3432	-	chaperone protein
3311	 47.67	+1	4400267..4402129	-	620	73670871	-	Mbar_A3433	-	heat shock protein 70
3312	 44.13	0	4402413..4403042	-	209	73670872	-	Mbar_A3434	-	heat shock protein
3313	 40.96	0	4403170..4403628	-	152	73670873	-	Mbar_A3435	-	hypothetical protein
3314	 44.79	0	4403983..4404942	+	319	73670874	-	Mbar_A3436	-	hypothetical protein
3315	 45.93	0	4405058..4406041	+	327	73670875	-	Mbar_A3437	-	hypothetical protein
3316	 45.65	0	4406438..4407103	+	221	73670876	-	Mbar_A3438	-	1-pyrroline-5-carboxylate synthetase
3317	 49.71	+1	4407297..4407467	+	56	73670877	-	Mbar_A3439	-	hypothetical protein
3318	 43.70	0	4407561..4407830	+	89	73670878	ef1B	Mbar_A3440	-	elongation factor 1-beta
3319	 49.91	+1	4408642..4409715	-	357	73670879	-	Mbar_A3441	-	Fe-S oxidoreductase of MoeA/NarA subfamily
3320	 38.18	0	4410324..4410962	-	212	73670880	-	Mbar_A3442	-	TetR family transcriptional regulator
3321	 40.56	0	4411249..4412397	+	382	73670881	-	Mbar_A3443	-	hypothetical protein
3322	 44.19	0	4412422..4413591	+	389	73670882	-	Mbar_A3444	-	putative ABC transporter permease protein
3323	 42.56	0	4413739..4414908	+	389	73670883	-	Mbar_A3445	-	hypothetical protein
3324	 40.20	0	4415180..4415863	+	227	73670884	-	Mbar_A3446	-	ABC transporter, ATP-binding protein
3325	 39.83	0	4417461..4421093	+	1210	73670885	-	Mbar_A3447	-	hypothetical protein
3326	 39.81	0	4421132..4421563	+	143	73670886	-	Mbar_A3448	-	putative transcriptional regulator
3327	 41.91	0	4423231..4423743	-	170	73670887	-	Mbar_A3449	-	hypothetical protein
3328	 31.27	-2	4424732..4425409	+	225	73670888	-	Mbar_A3450	-	uncharacterized membrane protein
3329	 34.89	-1	4426636..4426956	+	106	73670889	-	Mbar_A3451	-	hypothetical protein
3330	 48.13	+1	4427143..4428372	-	409	73670890	hisS	Mbar_A3452	-	histidyl-tRNA synthetase
3331	 45.54	0	4428727..4430217	+	496	73670891	-	Mbar_A3453	-	L-threonine O-3-phosphate decarboxylase
3332	 46.50	0	4430214..4431200	+	328	73670892	-	Mbar_A3454	-	adenosylcobinamide-phosphate synthase
3333	 44.75	0	4431343..4431885	+	180	73670893	-	Mbar_A3455	-	hypothetical protein
3334	 45.08	0	4431920..4432762	+	280	73670894	-	Mbar_A3456	-	cobalamin-5'-phosphate synthase
3335	 43.63	0	4432747..4433358	+	203	73670895	-	Mbar_A3457	-	putative nucleotidyltransferase
3336	 47.54	+1	4433402..4434112	+	236	73670896	-	Mbar_A3458	-	ABC transporter, ATP-binding protein
3337	 44.86	0	4434116..4435078	+	320	73670897	-	Mbar_A3459	-	ABC transporter, ATP-binding protein
3338	 38.85	0	4435111..4435563	+	150	73670898	-	Mbar_A3460	-	hypothetical protein
3339	 41.31	0	4436688..4441691	+	1667	73670899	-	Mbar_A3461	-	hypothetical protein
3340	 39.91	0	4441941..4442624	-	227	73670900	-	Mbar_A3462	-	hypothetical protein
3341	 46.02	0	4442964..4444145	-	393	73670901	-	Mbar_A3463	-	aminotransferase
3342	 43.50	0	4444226..4444717	-	163	73670902	-	Mbar_A3464	-	AsnC family transcriptional regulator
3343	 43.12	0	4444788..4445165	-	125	73670903	-	Mbar_A3465	-	30S ribosomal protein S8e
3344	 38.84	0	4446107..4446433	+	108	73670904	-	Mbar_A3466	-	hypothetical protein
3345	 46.23	0	4446799..4447488	+	229	73670905	-	Mbar_A3467	-	hypothetical protein
3346	 39.49	0	4447880..4448431	-	183	73670906	-	Mbar_A3468	-	multimeric flavodoxin WrbA family protein
3347	 38.26	0	4448424..4449032	-	202	73670907	-	Mbar_A3469	-	galactoside-O-acetyltransferase
3348	 41.92	0	4450089..4450589	+	166	73670908	-	Mbar_A3470	-	hypothetical protein
3349	 47.32	+1	4450778..4451392	+	204	73670909	-	Mbar_A3471	-	orotate phosphoribosyltransferase
3350	 45.05	0	4451959..4454091	-	710	73670910	-	Mbar_A3472	-	hypothetical protein
3351	 40.63	0	4454777..4455571	+	264	73670911	-	Mbar_A3473	-	SPFH domain-containing protein/band 7 family protein
3352	 42.44	0	4455616..4456944	+	442	73670912	-	Mbar_A3474	-	nodulation efficiency protein NfeD
3353	 46.29	0	4457199..4458533	-	444	73670913	-	Mbar_A3475	-	hypothetical protein
3354	 47.45	+1	4458729..4459337	-	202	73670914	hisH	Mbar_A3476	-	imidazole glycerol phosphate synthase subunit HisH
3355	 43.52	0	4459496..4459711	-	71	73670915	-	Mbar_A3477	-	hypothetical protein
3356	 34.24	-1	4460232..4461005	-	257	73670916	-	Mbar_A3478	-	hypothetical protein
3357	 44.24	0	4462681..4463166	+	161	73670917	-	Mbar_A3480	-	hypothetical protein
3358	 44.37	0	4463209..4463670	+	153	73670918	-	Mbar_A3481	-	hypothetical protein
3359	 39.48	0	4465553..4466170	+	205	73670919	-	Mbar_A3483	-	hypothetical protein
3360	 43.35	0	4466798..4467346	+	182	73670920	-	Mbar_A3484	-	hypothetical protein
3361	 48.40	+1	4467368..4469146	-	592	73670921	-	Mbar_A3485	-	multidrug efflux protein
3362	 43.59	0	4469152..4469619	-	155	73670922	-	Mbar_A3486	-	PadR family transcriptional regulator
3363	 41.96	0	4470204..4471061	-	285	73670923	-	Mbar_A3487	-	hypothetical protein
3364	 32.39	-1	4471651..4472073	+	140	73670924	-	Mbar_A3488	-	hypothetical protein
3365	 37.39	0	4472265..4473572	-	435	73670925	-	Mbar_A3489	-	transposase
3366	 46.54	+1	4473732..4475654	-	640	73670926	-	Mbar_A3490	-	ATPase
3367	 37.53	0	4475817..4477628	-	603	73670927	-	Mbar_A3491	-	potassium uptake protein Kup
3368	 44.03	0	4478390..4479847	+	485	73670928	-	Mbar_A3492	-	integral membrane protein
3369	 37.69	0	4480485..4480943	+	152	73670929	-	Mbar_A3493	-	MarR family transcriptional regulator
3370	 40.22	0	4482330..4484915	+	861	73670930	-	Mbar_A3494	-	hypothetical protein
3371	 33.22	-1	4485666..4486538	+	290	73670931	-	Mbar_A3495	-	hypothetical protein
3372	 30.62	-2	4486542..4487204	+	220	73670932	-	Mbar_A3496	-	hypothetical protein
3373	 42.75	0	4487852..4488265	+	137	73670933	-	Mbar_A3497	-	hypothetical protein
3374	 47.00	+1	4488461..4489894	-	477	73670934	-	Mbar_A3498	-	amidophosphoribosyltransferase
3375	 40.35	0	4489944..4490114	-	56	73670935	rpl37e	Mbar_A3499	-	50S ribosomal protein L37e
3376	 46.12	0	4490265..4490483	-	72	73670936	-	Mbar_A3500	-	small nuclear ribonucleoprotein
3377	 48.78	+1	4490945..4492291	+	448	73670937	-	Mbar_A3501	-	hydroxymethylpyrimidine kinase
3378	 29.41	-2	4492465..4492719	-	84	73670938	-	Mbar_A3502	-	hypothetical protein
3379	 46.57	+1	4492772..4494070	+	432	73670939	-	Mbar_A3503	-	tryptophan synthase subunit beta
3380	 41.67	0	4494668..4494895	-	75	73670940	-	Mbar_A3504	-	hypothetical protein
3381	 37.50	0	4495060..4495467	-	135	73670941	-	Mbar_A3505	-	hypothetical protein
3382	 37.99	0	4495954..4496361	-	135	73670942	-	Mbar_A3506	-	hypothetical protein
3383	 46.47	0	4496463..4497764	-	433	73670943	hisD	Mbar_A3507	-	histidinol dehydrogenase
3384	 47.63	+1	4498153..4500342	-	729	73670944	-	Mbar_A3508	-	ski2-like helicase
3385	 46.86	+1	4500573..4502339	-	588	73670945	-	Mbar_A3509	-	putative ATPase RIL
3386	 41.31	0	4503102..4504091	+	329	73670946	-	Mbar_A3510	-	hypothetical protein
3387	 47.30	+1	4505142..4506050	-	302	73670947	-	Mbar_A3512	-	ornithine carbamoyltransferase
3388	 45.08	0	4506377..4507678	-	433	73670948	-	Mbar_A3513	-	phosphoribosylamine--glycine ligase
3389	 41.16	0	4508146..4508541	+	131	73670949	-	Mbar_A3514	-	hypothetical protein
3390	 44.33	0	4508576..4509139	-	187	73670950	-	Mbar_A3515	-	orotate phosphoribosyltransferase
3391	 45.64	0	4509229..4509756	-	175	73670951	-	Mbar_A3516	-	hypothetical protein
3392	 33.74	-1	4509822..4510064	-	80	73670952	-	Mbar_A3517	-	hypothetical protein
3393	 47.17	+1	4511099..4512703	-	534	73670953	-	Mbar_A3518	-	CTP synthetase
3394	 38.84	0	4513420..4514163	-	247	73670954	-	Mbar_A3519	-	hypothetical protein
3395	 45.24	0	4514178..4514345	-	55	73670955	-	Mbar_A3520	-	hypothetical protein
3396	 25.17	-2	4516385..4516837	-	150	73670956	-	Mbar_A3522	-	hypothetical protein
3397	 29.52	-2	4516838..4517728	-	296	73670957	-	Mbar_A3523	-	hypothetical protein
3398	 35.05	-1	4518069..4518827	+	252	73670958	-	Mbar_A3524	-	hypothetical protein
3399	 49.44	+1	4520175..4522049	+	624	73670959	-	Mbar_A3525	-	carbon monoxide dehydrogenase
3400	 49.20	+1	4522075..4522572	+	165	73670960	-	Mbar_A3526	-	carbon-monoxide dehydrogenase, Fe-S subunit
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.