IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3254	 39.32	0	4335751..4336251	+	166	73670814	-	Mbar_A3376	-	hypothetical protein
3255	 34.38	-1	4336211..4336975	+	254	73670815	-	Mbar_A3377	-	hypothetical protein
3256	 38.87	0	4337526..4338302	+	258	73670816	-	Mbar_A3378	-	hypothetical protein
3257	 30.34	-2	4338390..4339058	+	222	73670817	-	Mbar_A3379	-	hypothetical protein
3258	 30.57	-2	4339055..4339705	+	216	73670818	-	Mbar_A3380	-	hypothetical protein
3259	 34.01	-1	4339767..4340807	+	346	73670819	-	Mbar_A3381	-	hypothetical protein
3260	 36.04	-1	4340896..4342005	+	369	73670820	-	Mbar_A3382	-	hypothetical protein
3261	 48.57	+1	4342497..4342916	-	139	73670821	-	Mbar_A3383	-	30S ribosomal protein S6e
3262	 47.13	+1	4343066..4344841	-	591	73670822	-	Mbar_A3384	-	translation initiation factor IF-2
3263	 48.00	+1	4344996..4345445	-	149	73670823	-	Mbar_A3385	-	nucleoside diphosphate kinase
3264	 44.97	0	4345486..4345674	-	62	73670824	-	Mbar_A3386	-	50S ribosomal protein L24e
3265	 49.10	+1	4345690..4345911	-	73	73670825	rps28e	Mbar_A3387	-	30S ribosomal protein S28e
3266	 45.18	0	4345936..4346298	-	120	73670826	rpl7ae	Mbar_A3388	-	50S ribosomal protein L7Ae
3267	 42.28	0	4346607..4347254	+	215	73670827	-	Mbar_A3389	-	hypothetical protein
3268	 41.94	0	4347928..4349391	-	487	73670828	-	Mbar_A3390	-	hypothetical protein
3269	 29.35	-2	4349574..4349774	-	66	73670829	-	Mbar_A3391	-	hypothetical protein
3270	 30.63	-2	4349755..4350087	-	110	73670830	-	Mbar_A3392	-	hypothetical protein
3271	 42.24	0	4350837..4352531	-	564	73670831	-	Mbar_A3393	-	cell surface protein
3272	 44.35	0	4352888..4353577	+	229	73670832	-	Mbar_A3394	-	uncharacterized Fe-S protein
3273	 34.15	-1	4354157..4355011	-	284	73670833	-	Mbar_A3395	-	hypothetical protein
3274	 37.84	0	4355407..4355850	+	147	73670834	-	Mbar_A3396	-	hypothetical protein
3275	 31.91	-2	4356297..4356788	+	163	73670835	-	Mbar_A3397	-	hypothetical protein
3276	 36.35	-1	4356907..4357404	-	165	73670836	-	Mbar_A3398	-	ribosomal-protein-alanine acetyltransferase
3277	 37.78	0	4358074..4364364	-	2096	73670837	-	Mbar_A3399	-	hypothetical protein
3278	 45.48	0	4364898..4365284	-	128	73670838	-	Mbar_A3400	-	F420H2 dehydrogenase subunit O
3279	 48.55	+1	4365298..4366743	-	481	73670839	-	Mbar_A3401	-	F420H2 dehydrogenase subunit N
3280	 48.19	+1	4366747..4368234	-	495	73670840	-	Mbar_A3402	-	F420H2 dehydrogenase subunit M
3281	 48.05	+1	4368234..4370237	-	667	73670841	-	Mbar_A3403	-	F420H2 dehydrogenase subunit L
3282	 45.87	0	4370246..4370548	-	100	73670842	-	Mbar_A3404	-	F420H2 dehydrogenase subunit K
3283	 48.81	+1	4370677..4370928	-	83	73670843	-	Mbar_A3405	-	F420H2 dehydrogenase subunit
3284	 45.02	0	4370918..4371208	-	96	73670844	-	Mbar_A3406	-	NADH dehydrogenase subunit J
3285	 47.20	+1	4371205..4371615	-	136	73670845	-	Mbar_A3407	-	F420H2 dehydrogenase subunit I
3286	 44.67	0	4371619..4372659	-	346	73670846	-	Mbar_A3408	-	F420H2 dehydrogenase subunit H
3287	 46.67	+1	4372665..4373789	-	374	73670847	-	Mbar_A3409	-	F420H2 dehydrogenase subunit D
3288	 43.19	0	4373799..4374275	-	158	73670848	-	Mbar_A3410	-	NADH dehydrogenase subunit C
3289	 43.60	0	4374323..4374877	-	184	73670849	-	Mbar_A3411	-	F420H2 dehydrogenase subunit B
3290	 42.93	0	4374865..4375239	-	124	73670850	-	Mbar_A3412	-	F420H2 dehydrogenase subunit A
3291	 47.53	+1	4376495..4376656	+	53	73670851	-	Mbar_A3413	-	putative ferredoxin
3292	 46.79	+1	4376653..4377930	+	425	73670852	-	Mbar_A3414	-	phytoene dehydrogenase family protein
3293	 46.93	+1	4377988..4378965	+	325	73670853	cofG	Mbar_A3415	-	FO synthase subunit 1
3294	 46.15	0	4378993..4380123	+	376	73670854	-	Mbar_A3416	-	FO synthase subunit 2
3295	 45.89	0	4380180..4381334	+	384	73670855	-	Mbar_A3417	-	FO synthase subunit 2
3296	 43.22	0	4381752..4382378	+	208	73670856	-	Mbar_A3418	-	hypothetical protein
3297	 34.32	-1	4382591..4383196	+	201	73670857	-	Mbar_A3419	-	transcription regulation protein
3298	 43.46	0	4383300..4384820	+	506	73670858	-	Mbar_A3420	-	MoaA/NifB/PqqE family protein
3299	 48.02	+1	4385319..4385495	+	58	73670859	-	Mbar_A3421	-	ferredoxin
3300	 46.24	0	4385492..4386715	+	407	73670860	-	Mbar_A3422	-	geranylgeranyl reductase
3301	 42.49	0	4387695..4389125	-	476	73670861	-	Mbar_A3423	-	trk system potassium uptake protein
3302	 44.10	0	4389181..4390527	-	448	73670862	trkA	Mbar_A3424	-	potassium transporter peripheral membrane component
3303	 41.76	0	4391026..4391844	-	272	73670863	-	Mbar_A3425	-	molybdenum ABC transporter, solute-binding protein
3304	 34.76	-1	4392270..4392902	-	210	73670864	-	Mbar_A3426	-	hypothetical protein
3305	 39.29	0	4393481..4394185	-	234	73670865	-	Mbar_A3427	-	ArsR family transcriptional regulator
3306	 35.13	-1	4394471..4395139	+	222	73670866	-	Mbar_A3428	-	cytochrome c-type biogenesis protein ccdA
3307	 41.46	0	4395450..4396901	-	483	73670867	-	Mbar_A3429	-	sodium transport protein
3308	 43.50	0	4396905..4398251	-	448	73670868	trkA	Mbar_A3430	-	potassium transporter peripheral membrane component
3309	 30.91	-2	4398590..4398919	+	109	73670869	-	Mbar_A3431	-	hypothetical protein
3310	 47.81	+1	4398991..4400157	-	388	73670870	-	Mbar_A3432	-	chaperone protein
3311	 47.67	+1	4400267..4402129	-	620	73670871	-	Mbar_A3433	-	heat shock protein 70
3312	 44.13	0	4402413..4403042	-	209	73670872	-	Mbar_A3434	-	heat shock protein
3313	 40.96	0	4403170..4403628	-	152	73670873	-	Mbar_A3435	-	hypothetical protein
3314	 44.79	0	4403983..4404942	+	319	73670874	-	Mbar_A3436	-	hypothetical protein
3315	 45.93	0	4405058..4406041	+	327	73670875	-	Mbar_A3437	-	hypothetical protein
3316	 45.65	0	4406438..4407103	+	221	73670876	-	Mbar_A3438	-	1-pyrroline-5-carboxylate synthetase
3317	 49.71	+1	4407297..4407467	+	56	73670877	-	Mbar_A3439	-	hypothetical protein
3318	 43.70	0	4407561..4407830	+	89	73670878	ef1B	Mbar_A3440	-	elongation factor 1-beta
3319	 49.91	+1	4408642..4409715	-	357	73670879	-	Mbar_A3441	-	Fe-S oxidoreductase of MoeA/NarA subfamily
3320	 38.18	0	4410324..4410962	-	212	73670880	-	Mbar_A3442	-	TetR family transcriptional regulator
3321	 40.56	0	4411249..4412397	+	382	73670881	-	Mbar_A3443	-	hypothetical protein
3322	 44.19	0	4412422..4413591	+	389	73670882	-	Mbar_A3444	-	putative ABC transporter permease protein
3323	 42.56	0	4413739..4414908	+	389	73670883	-	Mbar_A3445	-	hypothetical protein
3324	 40.20	0	4415180..4415863	+	227	73670884	-	Mbar_A3446	-	ABC transporter, ATP-binding protein
3325	 39.83	0	4417461..4421093	+	1210	73670885	-	Mbar_A3447	-	hypothetical protein
3326	 39.81	0	4421132..4421563	+	143	73670886	-	Mbar_A3448	-	putative transcriptional regulator
3327	 41.91	0	4423231..4423743	-	170	73670887	-	Mbar_A3449	-	hypothetical protein
3328	 31.27	-2	4424732..4425409	+	225	73670888	-	Mbar_A3450	-	uncharacterized membrane protein
3329	 34.89	-1	4426636..4426956	+	106	73670889	-	Mbar_A3451	-	hypothetical protein
3330	 48.13	+1	4427143..4428372	-	409	73670890	hisS	Mbar_A3452	-	histidyl-tRNA synthetase
3331	 45.54	0	4428727..4430217	+	496	73670891	-	Mbar_A3453	-	L-threonine O-3-phosphate decarboxylase
3332	 46.50	0	4430214..4431200	+	328	73670892	-	Mbar_A3454	-	adenosylcobinamide-phosphate synthase
3333	 44.75	0	4431343..4431885	+	180	73670893	-	Mbar_A3455	-	hypothetical protein
3334	 45.08	0	4431920..4432762	+	280	73670894	-	Mbar_A3456	-	cobalamin-5'-phosphate synthase
3335	 43.63	0	4432747..4433358	+	203	73670895	-	Mbar_A3457	-	putative nucleotidyltransferase
3336	 47.54	+1	4433402..4434112	+	236	73670896	-	Mbar_A3458	-	ABC transporter, ATP-binding protein
3337	 44.86	0	4434116..4435078	+	320	73670897	-	Mbar_A3459	-	ABC transporter, ATP-binding protein
3338	 38.85	0	4435111..4435563	+	150	73670898	-	Mbar_A3460	-	hypothetical protein
3339	 41.31	0	4436688..4441691	+	1667	73670899	-	Mbar_A3461	-	hypothetical protein
3340	 39.91	0	4441941..4442624	-	227	73670900	-	Mbar_A3462	-	hypothetical protein
3341	 46.02	0	4442964..4444145	-	393	73670901	-	Mbar_A3463	-	aminotransferase
3342	 43.50	0	4444226..4444717	-	163	73670902	-	Mbar_A3464	-	AsnC family transcriptional regulator
3343	 43.12	0	4444788..4445165	-	125	73670903	-	Mbar_A3465	-	30S ribosomal protein S8e
3344	 38.84	0	4446107..4446433	+	108	73670904	-	Mbar_A3466	-	hypothetical protein
3345	 46.23	0	4446799..4447488	+	229	73670905	-	Mbar_A3467	-	hypothetical protein
3346	 39.49	0	4447880..4448431	-	183	73670906	-	Mbar_A3468	-	multimeric flavodoxin WrbA family protein
3347	 38.26	0	4448424..4449032	-	202	73670907	-	Mbar_A3469	-	galactoside-O-acetyltransferase
3348	 41.92	0	4450089..4450589	+	166	73670908	-	Mbar_A3470	-	hypothetical protein
3349	 47.32	+1	4450778..4451392	+	204	73670909	-	Mbar_A3471	-	orotate phosphoribosyltransferase
3350	 45.05	0	4451959..4454091	-	710	73670910	-	Mbar_A3472	-	hypothetical protein
3351	 40.63	0	4454777..4455571	+	264	73670911	-	Mbar_A3473	-	SPFH domain-containing protein/band 7 family protein
3352	 42.44	0	4455616..4456944	+	442	73670912	-	Mbar_A3474	-	nodulation efficiency protein NfeD
3353	 46.29	0	4457199..4458533	-	444	73670913	-	Mbar_A3475	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.