IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.74   STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3212	 46.76	+1	4274650..4276146	-	498	73670772	-	Mbar_A3329	-	MoxR-related protein
3213	 38.60	0	4276662..4277117	+	151	73670773	-	Mbar_A3330	-	transcription repressor
3214	 41.94	0	4277155..4277514	+	119	73670774	-	Mbar_A3331	-	hypothetical protein
3215	 36.93	-1	4278465..4278992	-	175	73670775	-	Mbar_A3332	-	hypothetical protein
3216	 42.61	0	4279236..4280000	-	254	73670776	-	Mbar_A3333	-	DNA-3-methyladenine glycosylase III
3217	 36.69	-1	4280367..4280873	-	168	73670777	-	Mbar_A3334	-	hypothetical protein
3218	 42.60	0	4281162..4282553	-	463	73670778	-	Mbar_A3335	-	ABC transporter, permease protein
3219	 42.50	0	4282588..4283961	-	457	73670779	-	Mbar_A3336	-	hypothetical protein
3220	 44.26	0	4284248..4284988	-	246	73670780	-	Mbar_A3337	-	ABC transporter, ATP-binding protein
3221	 29.17	-2	4285112..4285327	+	71	73670781	-	Mbar_A3338	-	hypothetical protein
3222	 41.06	0	4285435..4285641	-	68	73670782	-	Mbar_A3339	-	transcriptional regulator
3223	 35.61	-1	4285661..4286056	-	131	73670783	-	Mbar_A3340	-	hypothetical protein
3224	 42.96	0	4286616..4287197	+	193	73670784	-	Mbar_A3341	-	hypothetical protein
3225	 44.44	0	4287428..4289083	-	551	73670785	-	Mbar_A3342	-	adenine deaminase
3226	 42.28	0	4289515..4290375	+	286	73670786	-	Mbar_A3343	-	acetyltransferase
3227	 33.18	-1	4290419..4293097	-	892	73670787	-	Mbar_A3344	-	hypothetical protein
3228	 48.64	+1	4293324..4297100	+	1258	73670788	-	Mbar_A3345	-	5-oxoprolinase (ATP-hydrolyzing)
3229	 39.65	0	4297714..4298616	-	300	73670789	-	Mbar_A3346	-	hypothetical protein
3230	 42.39	0	4299519..4300004	-	161	73670790	-	Mbar_A3347	-	hypothetical protein
3231	 38.42	0	4300056..4300409	-	117	73670791	-	Mbar_A3348	-	hypothetical protein
3232	 45.33	0	4300992..4301558	+	188	73670792	-	Mbar_A3349	-	flavoredoxin Flr
3233	 45.36	0	4301841..4303037	-	398	73670793	-	Mbar_A3350	-	aldo/keto reductase
3234	 41.01	0	4305318..4306529	+	403	73670794	-	Mbar_A3353	-	flavoprotein A
3235	 38.89	0	4306920..4307099	+	59	73670795	-	Mbar_A3354	-	hypothetical protein
3236	 36.26	-1	4308810..4310417	+	535	73670796	-	Mbar_A3357	-	hypothetical protein
3237	 35.98	-1	4310427..4311332	+	301	73670797	-	Mbar_A3358	-	putative ABC-2 type transport system permease protein
3238	 36.50	-1	4311338..4312222	+	294	73670798	-	Mbar_A3359	-	hypothetical protein
3239	 33.86	-1	4313946..4314710	+	254	73670799	-	Mbar_A3361	-	hypothetical protein
3240	 36.81	-1	4314847..4316571	-	574	73670800	-	Mbar_A3362	-	hypothetical protein
3241	 36.34	-1	4316702..4318399	-	565	73670801	-	Mbar_A3363	-	hypothetical protein
3242	 36.11	-1	4318537..4320192	-	551	73670802	-	Mbar_A3364	-	hypothetical protein
3243	 38.31	0	4320347..4321231	-	294	73670803	-	Mbar_A3365	-	hypothetical protein
3244	 36.59	-1	4321244..4322104	-	286	73670804	-	Mbar_A3366	-	hypothetical protein
3245	 36.62	-1	4322109..4323782	-	557	73670805	-	Mbar_A3367	-	hypothetical protein
3246	 43.81	0	4323879..4324298	-	139	73670806	-	Mbar_A3368	-	hypothetical protein
3247	 40.79	0	4324762..4326330	+	522	73670807	-	Mbar_A3369	-	hypothetical protein
3248	 42.48	0	4326405..4327475	+	356	73670808	-	Mbar_A3370	-	ABC transporter, ATP-binding protein
3249	 37.37	0	4328545..4329312	+	255	73670809	-	Mbar_A3371	-	hypothetical protein
3250	 34.28	-1	4329956..4331014	+	352	73670810	-	Mbar_A3372	-	cell surface protein
3251	 36.50	-1	4331171..4332781	-	536	73670811	-	Mbar_A3373	-	hypothetical protein
3252	 40.60	0	4333101..4334531	+	476	73670812	-	Mbar_A3374	-	hypothetical protein
3253	 37.30	0	4334518..4335072	+	184	73670813	-	Mbar_A3375	-	hypothetical protein
3254	 39.32	0	4335751..4336251	+	166	73670814	-	Mbar_A3376	-	hypothetical protein
3255	 34.38	-1	4336211..4336975	+	254	73670815	-	Mbar_A3377	-	hypothetical protein
3256	 38.87	0	4337526..4338302	+	258	73670816	-	Mbar_A3378	-	hypothetical protein
3257	 30.34	-2	4338390..4339058	+	222	73670817	-	Mbar_A3379	-	hypothetical protein
3258	 30.57	-2	4339055..4339705	+	216	73670818	-	Mbar_A3380	-	hypothetical protein
3259	 34.01	-1	4339767..4340807	+	346	73670819	-	Mbar_A3381	-	hypothetical protein
3260	 36.04	-1	4340896..4342005	+	369	73670820	-	Mbar_A3382	-	hypothetical protein
3261	 48.57	+1	4342497..4342916	-	139	73670821	-	Mbar_A3383	-	30S ribosomal protein S6e
3262	 47.13	+1	4343066..4344841	-	591	73670822	-	Mbar_A3384	-	translation initiation factor IF-2
3263	 48.00	+1	4344996..4345445	-	149	73670823	-	Mbar_A3385	-	nucleoside diphosphate kinase
3264	 44.97	0	4345486..4345674	-	62	73670824	-	Mbar_A3386	-	50S ribosomal protein L24e
3265	 49.10	+1	4345690..4345911	-	73	73670825	rps28e	Mbar_A3387	-	30S ribosomal protein S28e
3266	 45.18	0	4345936..4346298	-	120	73670826	rpl7ae	Mbar_A3388	-	50S ribosomal protein L7Ae
3267	 42.28	0	4346607..4347254	+	215	73670827	-	Mbar_A3389	-	hypothetical protein
3268	 41.94	0	4347928..4349391	-	487	73670828	-	Mbar_A3390	-	hypothetical protein
3269	 29.35	-2	4349574..4349774	-	66	73670829	-	Mbar_A3391	-	hypothetical protein
3270	 30.63	-2	4349755..4350087	-	110	73670830	-	Mbar_A3392	-	hypothetical protein
3271	 42.24	0	4350837..4352531	-	564	73670831	-	Mbar_A3393	-	cell surface protein
3272	 44.35	0	4352888..4353577	+	229	73670832	-	Mbar_A3394	-	uncharacterized Fe-S protein
3273	 34.15	-1	4354157..4355011	-	284	73670833	-	Mbar_A3395	-	hypothetical protein
3274	 37.84	0	4355407..4355850	+	147	73670834	-	Mbar_A3396	-	hypothetical protein
3275	 31.91	-2	4356297..4356788	+	163	73670835	-	Mbar_A3397	-	hypothetical protein
3276	 36.35	-1	4356907..4357404	-	165	73670836	-	Mbar_A3398	-	ribosomal-protein-alanine acetyltransferase
3277	 37.78	0	4358074..4364364	-	2096	73670837	-	Mbar_A3399	-	hypothetical protein
3278	 45.48	0	4364898..4365284	-	128	73670838	-	Mbar_A3400	-	F420H2 dehydrogenase subunit O
3279	 48.55	+1	4365298..4366743	-	481	73670839	-	Mbar_A3401	-	F420H2 dehydrogenase subunit N
3280	 48.19	+1	4366747..4368234	-	495	73670840	-	Mbar_A3402	-	F420H2 dehydrogenase subunit M
3281	 48.05	+1	4368234..4370237	-	667	73670841	-	Mbar_A3403	-	F420H2 dehydrogenase subunit L
3282	 45.87	0	4370246..4370548	-	100	73670842	-	Mbar_A3404	-	F420H2 dehydrogenase subunit K
3283	 48.81	+1	4370677..4370928	-	83	73670843	-	Mbar_A3405	-	F420H2 dehydrogenase subunit
3284	 45.02	0	4370918..4371208	-	96	73670844	-	Mbar_A3406	-	NADH dehydrogenase subunit J
3285	 47.20	+1	4371205..4371615	-	136	73670845	-	Mbar_A3407	-	F420H2 dehydrogenase subunit I
3286	 44.67	0	4371619..4372659	-	346	73670846	-	Mbar_A3408	-	F420H2 dehydrogenase subunit H
3287	 46.67	+1	4372665..4373789	-	374	73670847	-	Mbar_A3409	-	F420H2 dehydrogenase subunit D
3288	 43.19	0	4373799..4374275	-	158	73670848	-	Mbar_A3410	-	NADH dehydrogenase subunit C
3289	 43.60	0	4374323..4374877	-	184	73670849	-	Mbar_A3411	-	F420H2 dehydrogenase subunit B
3290	 42.93	0	4374865..4375239	-	124	73670850	-	Mbar_A3412	-	F420H2 dehydrogenase subunit A
3291	 47.53	+1	4376495..4376656	+	53	73670851	-	Mbar_A3413	-	putative ferredoxin
3292	 46.79	+1	4376653..4377930	+	425	73670852	-	Mbar_A3414	-	phytoene dehydrogenase family protein
3293	 46.93	+1	4377988..4378965	+	325	73670853	cofG	Mbar_A3415	-	FO synthase subunit 1
3294	 46.15	0	4378993..4380123	+	376	73670854	-	Mbar_A3416	-	FO synthase subunit 2
3295	 45.89	0	4380180..4381334	+	384	73670855	-	Mbar_A3417	-	FO synthase subunit 2
3296	 43.22	0	4381752..4382378	+	208	73670856	-	Mbar_A3418	-	hypothetical protein
3297	 34.32	-1	4382591..4383196	+	201	73670857	-	Mbar_A3419	-	transcription regulation protein
3298	 43.46	0	4383300..4384820	+	506	73670858	-	Mbar_A3420	-	MoaA/NifB/PqqE family protein
3299	 48.02	+1	4385319..4385495	+	58	73670859	-	Mbar_A3421	-	ferredoxin
3300	 46.24	0	4385492..4386715	+	407	73670860	-	Mbar_A3422	-	geranylgeranyl reductase
3301	 42.49	0	4387695..4389125	-	476	73670861	-	Mbar_A3423	-	trk system potassium uptake protein
3302	 44.10	0	4389181..4390527	-	448	73670862	trkA	Mbar_A3424	-	potassium transporter peripheral membrane component
3303	 41.76	0	4391026..4391844	-	272	73670863	-	Mbar_A3425	-	molybdenum ABC transporter, solute-binding protein
3304	 34.76	-1	4392270..4392902	-	210	73670864	-	Mbar_A3426	-	hypothetical protein
3305	 39.29	0	4393481..4394185	-	234	73670865	-	Mbar_A3427	-	ArsR family transcriptional regulator
3306	 35.13	-1	4394471..4395139	+	222	73670866	-	Mbar_A3428	-	cytochrome c-type biogenesis protein ccdA
3307	 41.46	0	4395450..4396901	-	483	73670867	-	Mbar_A3429	-	sodium transport protein
3308	 43.50	0	4396905..4398251	-	448	73670868	trkA	Mbar_A3430	-	potassium transporter peripheral membrane component
3309	 30.91	-2	4398590..4398919	+	109	73670869	-	Mbar_A3431	-	hypothetical protein
3310	 47.81	+1	4398991..4400157	-	388	73670870	-	Mbar_A3432	-	chaperone protein
3311	 47.67	+1	4400267..4402129	-	620	73670871	-	Mbar_A3433	-	heat shock protein 70
41.74	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.