IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3146	 45.45	0	4185493..4186284	+	263	73670706	-	Mbar_A3260	-	23S RNA methyltransferase J
3147	 51.23	+1	4186504..4187151	+	215	73670707	-	Mbar_A3261	-	hypothetical protein
3148	 46.83	+1	4187701..4188063	+	120	73670708	-	Mbar_A3262	-	hypothetical protein
3149	 40.23	0	4188488..4189951	-	487	73670709	-	Mbar_A3263	-	hypothetical protein
3150	 44.07	0	4190718..4193390	+	890	73670710	-	Mbar_A3264	-	phosphoenolpyruvate synthase
3151	 39.31	0	4194169..4196007	+	612	73670711	-	Mbar_A3265	-	hypothetical protein
3152	 45.12	0	4196168..4196659	-	163	73670712	-	Mbar_A3266	-	nitroreductase family protein
3153	 37.97	0	4197439..4198344	-	301	73670713	-	Mbar_A3267	-	cation efflux system protein
3154	 38.48	0	4198815..4199804	+	329	73670714	-	Mbar_A3268	-	hypothetical protein
3155	 46.43	0	4199961..4201457	-	498	73670715	-	Mbar_A3269	-	type I restriction-modification system specificity subunit
3156	 34.21	-1	4201897..4203258	-	453	73670716	-	Mbar_A3270	-	hypothetical protein
3157	 35.51	-1	4203269..4205386	-	705	73670717	-	Mbar_A3271	-	hypothetical protein
3158	 37.19	0	4205421..4206899	-	492	73670718	-	Mbar_A3272	-	type I restriction-modification system specificity subunit
3159	 25.89	-2	4207135..4207806	-	223	73670719	-	Mbar_A3273	-	hypothetical protein
3160	 44.30	0	4208140..4210893	-	917	73670720	-	Mbar_A3274	-	type I site-specific deoxyribonuclease
3161	 42.18	0	4211041..4212171	-	376	73670721	-	Mbar_A3275	-	hypothetical protein
3162	 35.53	-1	4213033..4213305	+	90	73670722	-	Mbar_A3276	-	hypothetical protein
3163	 31.37	-2	4214018..4214323	-	101	73670723	-	Mbar_A3277	-	hypothetical protein
3164	 42.62	0	4214456..4214821	+	121	73670724	-	Mbar_A3278	-	hypothetical protein
3165	 42.45	0	4215131..4216336	-	401	73670725	-	Mbar_A3279	-	aminotransferase
3166	 35.74	-1	4216793..4217995	-	400	73670726	-	Mbar_A3280	-	hypothetical protein
3167	 31.70	-2	4218274..4218825	+	183	73670727	-	Mbar_A3281	-	hypothetical protein
3168	 46.59	+1	4219687..4219965	+	92	73670728	-	Mbar_A3282	-	acylphosphatase
3169	 44.06	0	4220085..4221650	-	521	73670729	-	Mbar_A3283	-	putative phosphoglycerate mutase
3170	 36.13	-1	4222723..4223151	-	142	73670730	-	Mbar_A3284	-	hypothetical protein
3171	 46.35	0	4224013..4224642	+	209	73670731	-	Mbar_A3285	-	AraC family transcriptional regulator
3172	 39.11	0	4224658..4225107	+	149	73670732	-	Mbar_A3286	-	acetyltransferase
3173	 49.39	+1	4225517..4226338	-	273	73670733	-	Mbar_A3287	-	nitroreductase
3174	 40.56	0	4226485..4227204	-	239	73670734	-	Mbar_A3288	-	hypothetical protein
3175	 42.86	0	4227654..4228577	-	307	73670735	-	Mbar_A3289	-	hypothetical protein
3176	 31.17	-2	4229014..4230078	+	354	73670736	-	Mbar_A3290	-	transposase, putative
3177	 47.47	+1	4230101..4230991	-	296	73670737	-	Mbar_A3291	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3178	 43.20	0	4231171..4231464	-	97	73670738	-	Mbar_A3292	-	hypothetical protein
3179	 45.08	0	4231464..4232093	-	209	73670739	-	Mbar_A3293	-	hypothetical protein
3180	 44.84	0	4232108..4233028	-	306	73670740	-	Mbar_A3294	-	hypothetical protein
3181	 47.12	+1	4233132..4234052	-	306	73670741	-	Mbar_A3295	-	hypothetical protein
3182	 38.80	0	4234148..4234513	-	121	73670742	-	Mbar_A3296	-	TetR family transcriptional regulator
3183	 37.71	0	4234544..4234840	-	98	73670743	-	Mbar_A3297	-	TetR family transcriptional regulator
3184	 43.66	0	4235601..4236665	-	354	73670744	-	Mbar_A3298	-	hypothetical protein
3185	 43.92	0	4237127..4237636	-	169	73670745	-	Mbar_A3299	-	NADPH-flavin oxidoreductase
3186	 35.69	-1	4238202..4239134	+	310	73670746	-	Mbar_A3300	-	hypothetical protein
3187	 39.92	0	4239254..4239982	+	242	73670747	-	Mbar_A3301	-	hypothetical protein
3188	 42.23	0	4240277..4240849	-	190	73670748	-	Mbar_A3302	-	isochorismatase
3189	 31.17	-2	4241093..4242157	+	354	73670749	-	Mbar_A3303	-	transposase, putative
3190	 45.89	0	4243519..4244187	-	222	73670750	-	Mbar_A3305	-	iron-sulfur flavoprotein
3191	 45.17	0	4244250..4245728	-	492	73670751	-	Mbar_A3306	-	efflux PumP antibiotic resistance protein
3192	 46.61	+1	4246554..4247675	+	373	73670752	-	Mbar_A3307	-	hypothetical protein
3193	 45.05	0	4247827..4249635	-	602	73670753	-	Mbar_A3308	-	hypothetical protein
3194	 45.86	0	4249724..4250266	-	180	73670754	-	Mbar_A3309	-	intracellular protease
3195	 44.47	0	4250681..4252036	-	451	73670755	-	Mbar_A3310	-	integral membrane protein
3196	 32.28	-1	4253194..4253571	-	125	73670756	-	Mbar_A3311	-	hypothetical protein
3197	 39.34	0	4254434..4254766	+	110	73670757	-	Mbar_A3312	-	ArsR family transcriptional regulator
3198	 42.57	0	4254953..4256110	+	385	73670758	-	Mbar_A3313	-	hypothetical protein
3199	 42.73	0	4256256..4257617	+	453	73670759	-	Mbar_A3314	-	hypothetical protein
3200	 43.95	0	4258813..4259217	+	134	73670760	-	Mbar_A3316	-	hypothetical protein
3201	 48.98	+1	4259150..4259590	+	146	73670761	-	Mbar_A3317	-	hypothetical protein
3202	 43.59	0	4259837..4260499	-	220	73670762	-	Mbar_A3318	-	thiamin-phosphate pyrophosphorylase
3203	 43.64	0	4260664..4261449	-	261	73670763	-	Mbar_A3319	-	hydroxyethylthiazole kinase
3204	 39.95	0	4262784..4263161	+	125	73670764	-	Mbar_A3321	-	chemotaxis protein
3205	 42.64	0	4263499..4264476	+	325	73670765	-	Mbar_A3322	-	NADH-dependent flavine oxidoreductase
3206	 29.56	-2	4264834..4265442	-	202	73670766	-	Mbar_A3323	-	hypothetical protein
3207	 36.51	-1	4266580..4267554	-	324	73670767	-	Mbar_A3324	-	hypothetical protein
3208	 39.19	0	4267921..4270737	+	938	73670768	-	Mbar_A3325	-	cell surface protein
3209	 40.28	0	4270740..4271027	+	95	73670769	-	Mbar_A3326	-	cell surface protein
3210	 41.72	0	4271529..4271957	+	142	73670770	-	Mbar_A3327	-	hypothetical protein
3211	 44.23	0	4272743..4274431	-	562	73670771	-	Mbar_A3328	-	hypothetical protein
3212	 46.76	+1	4274650..4276146	-	498	73670772	-	Mbar_A3329	-	MoxR-related protein
3213	 38.60	0	4276662..4277117	+	151	73670773	-	Mbar_A3330	-	transcription repressor
3214	 41.94	0	4277155..4277514	+	119	73670774	-	Mbar_A3331	-	hypothetical protein
3215	 36.93	-1	4278465..4278992	-	175	73670775	-	Mbar_A3332	-	hypothetical protein
3216	 42.61	0	4279236..4280000	-	254	73670776	-	Mbar_A3333	-	DNA-3-methyladenine glycosylase III
3217	 36.69	-1	4280367..4280873	-	168	73670777	-	Mbar_A3334	-	hypothetical protein
3218	 42.60	0	4281162..4282553	-	463	73670778	-	Mbar_A3335	-	ABC transporter, permease protein
3219	 42.50	0	4282588..4283961	-	457	73670779	-	Mbar_A3336	-	hypothetical protein
3220	 44.26	0	4284248..4284988	-	246	73670780	-	Mbar_A3337	-	ABC transporter, ATP-binding protein
3221	 29.17	-2	4285112..4285327	+	71	73670781	-	Mbar_A3338	-	hypothetical protein
3222	 41.06	0	4285435..4285641	-	68	73670782	-	Mbar_A3339	-	transcriptional regulator
3223	 35.61	-1	4285661..4286056	-	131	73670783	-	Mbar_A3340	-	hypothetical protein
3224	 42.96	0	4286616..4287197	+	193	73670784	-	Mbar_A3341	-	hypothetical protein
3225	 44.44	0	4287428..4289083	-	551	73670785	-	Mbar_A3342	-	adenine deaminase
3226	 42.28	0	4289515..4290375	+	286	73670786	-	Mbar_A3343	-	acetyltransferase
3227	 33.18	-1	4290419..4293097	-	892	73670787	-	Mbar_A3344	-	hypothetical protein
3228	 48.64	+1	4293324..4297100	+	1258	73670788	-	Mbar_A3345	-	5-oxoprolinase (ATP-hydrolyzing)
3229	 39.65	0	4297714..4298616	-	300	73670789	-	Mbar_A3346	-	hypothetical protein
3230	 42.39	0	4299519..4300004	-	161	73670790	-	Mbar_A3347	-	hypothetical protein
3231	 38.42	0	4300056..4300409	-	117	73670791	-	Mbar_A3348	-	hypothetical protein
3232	 45.33	0	4300992..4301558	+	188	73670792	-	Mbar_A3349	-	flavoredoxin Flr
3233	 45.36	0	4301841..4303037	-	398	73670793	-	Mbar_A3350	-	aldo/keto reductase
3234	 41.01	0	4305318..4306529	+	403	73670794	-	Mbar_A3353	-	flavoprotein A
3235	 38.89	0	4306920..4307099	+	59	73670795	-	Mbar_A3354	-	hypothetical protein
3236	 36.26	-1	4308810..4310417	+	535	73670796	-	Mbar_A3357	-	hypothetical protein
3237	 35.98	-1	4310427..4311332	+	301	73670797	-	Mbar_A3358	-	putative ABC-2 type transport system permease protein
3238	 36.50	-1	4311338..4312222	+	294	73670798	-	Mbar_A3359	-	hypothetical protein
3239	 33.86	-1	4313946..4314710	+	254	73670799	-	Mbar_A3361	-	hypothetical protein
3240	 36.81	-1	4314847..4316571	-	574	73670800	-	Mbar_A3362	-	hypothetical protein
3241	 36.34	-1	4316702..4318399	-	565	73670801	-	Mbar_A3363	-	hypothetical protein
3242	 36.11	-1	4318537..4320192	-	551	73670802	-	Mbar_A3364	-	hypothetical protein
3243	 38.31	0	4320347..4321231	-	294	73670803	-	Mbar_A3365	-	hypothetical protein
3244	 36.59	-1	4321244..4322104	-	286	73670804	-	Mbar_A3366	-	hypothetical protein
3245	 36.62	-1	4322109..4323782	-	557	73670805	-	Mbar_A3367	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.