IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3079	 41.44	0	4102586..4102807	-	73	73670639	-	Mbar_A3190	-	hypothetical protein
3080	 45.13	0	4103863..4105320	+	485	73670640	-	Mbar_A3191	-	cobyric acid synthase
3081	 46.28	0	4106255..4107235	-	326	73670641	-	Mbar_A3192	-	alanine dehydrogenase
3082	 43.25	0	4107435..4108160	+	241	73670642	-	Mbar_A3193	-	hypothetical protein
3083	 45.43	0	4108213..4109262	-	349	73670643	-	Mbar_A3194	-	O-GlcNAc transferase, p110 subunit
3084	 40.00	0	4109674..4110063	-	129	73670644	-	Mbar_A3195	-	hypothetical protein
3085	 43.62	0	4110486..4111292	+	268	73670645	-	Mbar_A3196	-	serine/threonine specific protein phosphatase
3086	 46.13	0	4111550..4112737	-	395	73670646	-	Mbar_A3197	-	O-GlcNAc transferase, p110 subunit
3087	 42.75	0	4113783..4114196	+	137	73670647	fxsA	Mbar_A3198	-	FxsA
3088	 41.70	0	4114429..4115145	-	238	73670648	-	Mbar_A3199	-	hypothetical protein
3089	 38.96	0	4115148..4115609	-	153	73670649	-	Mbar_A3200	-	hypothetical protein
3090	 44.92	0	4116063..4117253	+	396	73670650	-	Mbar_A3201	-	cysteine desulphurase
3091	 47.44	+1	4117319..4117708	+	129	73670651	-	Mbar_A3202	-	nitrogen fixation protein
3092	 43.23	0	4118661..4119650	+	329	73670652	-	Mbar_A3203	-	SSU ribosomal protein S6P modification protein
3093	 42.82	0	4119865..4120212	+	115	73670653	-	Mbar_A3204	-	peptidyl-tRNA hydrolase
3094	 45.86	0	4120339..4121583	+	414	73670654	-	Mbar_A3205	-	hypothetical protein
3095	 47.23	+1	4121622..4122938	+	438	73670655	truD	Mbar_A3206	-	tRNA pseudouridine synthase D
3096	 45.58	0	4123205..4124608	-	467	73670656	-	Mbar_A3207	-	putative transmembrane efflux protein
3097	 41.77	0	4125173..4125931	-	252	73670657	-	Mbar_A3209	-	hypothetical protein
3098	 42.69	0	4125924..4128200	-	758	73670658	-	Mbar_A3210	-	hypothetical protein
3099	 43.83	0	4128212..4129135	-	307	73670659	-	Mbar_A3211	-	ABC transporter ATP-binding protein
3100	 42.07	0	4130855..4131415	+	186	73670660	-	Mbar_A3213	-	hypothetical protein
3101	 40.79	0	4131606..4132235	+	209	73670661	-	Mbar_A3214	-	hypothetical protein
3102	 37.91	0	4132310..4133008	+	232	73670662	-	Mbar_A3215	-	hypothetical protein
3103	 41.88	0	4133638..4134105	-	155	73670663	-	Mbar_A3216	-	hypothetical protein
3104	 34.09	-1	4134384..4135568	-	394	73670664	-	Mbar_A3217	-	transposase
3105	 41.05	0	4135811..4136173	+	120	73670665	-	Mbar_A3218	-	universal stress protein
3106	 46.24	0	4136331..4136609	-	92	73670666	-	Mbar_A3219	-	hypothetical protein
3107	 47.68	+1	4136612..4137364	-	250	73670667	-	Mbar_A3220	-	phage shock protein A
3108	 41.73	0	4137768..4138505	+	245	73670668	-	Mbar_A3221	-	ArsR family transcriptional regulator
3109	 44.97	0	4138700..4139395	-	231	73670669	-	Mbar_A3222	-	hypothetical protein
3110	 43.00	0	4139453..4140073	-	206	73670670	-	Mbar_A3223	-	hypothetical protein
3111	 46.70	+1	4140345..4141511	-	388	73670671	-	Mbar_A3224	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
3112	 45.66	0	4141536..4142192	-	218	73670672	-	Mbar_A3225	-	cell surface lipoprotein
3113	 40.21	0	4142635..4143201	-	188	73670673	-	Mbar_A3226	-	hypothetical protein
3114	 43.07	0	4144211..4145443	-	410	73670674	-	Mbar_A3227	-	hypothetical protein
3115	 45.15	0	4146158..4146817	-	219	73670675	-	Mbar_A3228	-	hypothetical protein
3116	 48.43	+1	4147096..4147731	+	211	73670676	-	Mbar_A3229	-	hypothetical protein
3117	 46.53	+1	4147881..4149176	+	431	73670677	-	Mbar_A3230	-	hypothetical protein
3118	 45.58	0	4149325..4149618	+	97	73670678	-	Mbar_A3231	-	50S ribosomal protein L21e
3119	 41.03	0	4150240..4150629	+	129	73670679	-	Mbar_A3232	-	DNA-directed RNA polymerase, subunit F
3120	 47.16	+1	4150979..4151701	+	240	73670680	-	Mbar_A3233	-	hypothetical protein
3121	 41.67	0	4151890..4152753	+	287	73670681	ksgA	Mbar_A3234	-	dimethyladenosine transferase
3122	 42.53	0	4152852..4153460	+	202	73670682	-	Mbar_A3235	-	HemK related protein
3123	 36.34	-1	4154651..4155349	-	232	73670683	-	Mbar_A3236	-	xylene monooxygenase electron transfer component
3124	 43.33	0	4156824..4157423	-	199	73670684	-	Mbar_A3238	-	hypothetical protein
3125	 32.38	-1	4157912..4158121	-	69	73670685	-	Mbar_A3239	-	transposase
3126	 29.74	-2	4158118..4158312	-	64	73670686	-	Mbar_A3240	-	transposase
3127	 36.12	-1	4158349..4159461	+	370	73670687	-	Mbar_A3241	-	transposase
3128	 43.63	0	4159683..4160459	+	258	73670688	-	Mbar_A3242	-	DNA-(apurinic or apyrimidinic site) lyase
3129	 40.85	0	4161051..4161356	+	101	73670689	-	Mbar_A3243	-	large conductance mechanosensitive channel protein
3130	 37.30	0	4163057..4163686	-	209	73670690	-	Mbar_A3244	-	LysE type translocator
3131	 46.88	+1	4164000..4164752	-	250	73670691	-	Mbar_A3245	-	multidrug ABC transporter, permease protein
3132	 44.07	0	4164749..4165549	-	266	73670692	-	Mbar_A3246	-	ABC transporter, ATP-binding protein
3133	 40.34	0	4166278..4168518	-	746	73670693	-	Mbar_A3247	-	sensory transduction histidine kinase
3134	 37.81	0	4168551..4168997	-	148	73670694	-	Mbar_A3248	-	response regulator receiver
3135	 37.25	0	4169341..4169646	-	101	73670695	-	Mbar_A3249	-	hypothetical protein
3136	 39.74	0	4169579..4172638	-	1019	73670696	-	Mbar_A3250	-	sensory transduction histidine kinase
3137	 48.79	+1	4173604..4174839	-	411	73670697	-	Mbar_A3251	-	S-adenosyl-L-homocysteine hydrolase
3138	 47.04	+1	4175140..4176438	-	432	73670698	-	Mbar_A3252	-	N-ethylammeline chlorohydrolase
3139	 46.52	0	4176780..4177439	-	219	73670699	-	Mbar_A3253	-	hypothetical protein
3140	 45.80	0	4177436..4178197	-	253	73670700	-	Mbar_A3254	-	hypothetical protein
3141	 48.55	+1	4178548..4179480	-	310	73670701	-	Mbar_A3255	-	pantothenate kinase
3142	 48.10	+1	4179572..4180831	-	419	73670702	-	Mbar_A3256	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
3143	 49.05	+1	4181319..4182215	+	298	73670703	-	Mbar_A3257	-	hypothetical protein
3144	 40.71	0	4182413..4183144	+	243	73670704	-	Mbar_A3258	-	hypothetical protein
3145	 32.40	-1	4183969..4184715	-	248	73670705	-	Mbar_A3259	-	hypothetical protein
3146	 45.45	0	4185493..4186284	+	263	73670706	-	Mbar_A3260	-	23S RNA methyltransferase J
3147	 51.23	+1	4186504..4187151	+	215	73670707	-	Mbar_A3261	-	hypothetical protein
3148	 46.83	+1	4187701..4188063	+	120	73670708	-	Mbar_A3262	-	hypothetical protein
3149	 40.23	0	4188488..4189951	-	487	73670709	-	Mbar_A3263	-	hypothetical protein
3150	 44.07	0	4190718..4193390	+	890	73670710	-	Mbar_A3264	-	phosphoenolpyruvate synthase
3151	 39.31	0	4194169..4196007	+	612	73670711	-	Mbar_A3265	-	hypothetical protein
3152	 45.12	0	4196168..4196659	-	163	73670712	-	Mbar_A3266	-	nitroreductase family protein
3153	 37.97	0	4197439..4198344	-	301	73670713	-	Mbar_A3267	-	cation efflux system protein
3154	 38.48	0	4198815..4199804	+	329	73670714	-	Mbar_A3268	-	hypothetical protein
3155	 46.43	0	4199961..4201457	-	498	73670715	-	Mbar_A3269	-	type I restriction-modification system specificity subunit
3156	 34.21	-1	4201897..4203258	-	453	73670716	-	Mbar_A3270	-	hypothetical protein
3157	 35.51	-1	4203269..4205386	-	705	73670717	-	Mbar_A3271	-	hypothetical protein
3158	 37.19	0	4205421..4206899	-	492	73670718	-	Mbar_A3272	-	type I restriction-modification system specificity subunit
3159	 25.89	-2	4207135..4207806	-	223	73670719	-	Mbar_A3273	-	hypothetical protein
3160	 44.30	0	4208140..4210893	-	917	73670720	-	Mbar_A3274	-	type I site-specific deoxyribonuclease
3161	 42.18	0	4211041..4212171	-	376	73670721	-	Mbar_A3275	-	hypothetical protein
3162	 35.53	-1	4213033..4213305	+	90	73670722	-	Mbar_A3276	-	hypothetical protein
3163	 31.37	-2	4214018..4214323	-	101	73670723	-	Mbar_A3277	-	hypothetical protein
3164	 42.62	0	4214456..4214821	+	121	73670724	-	Mbar_A3278	-	hypothetical protein
3165	 42.45	0	4215131..4216336	-	401	73670725	-	Mbar_A3279	-	aminotransferase
3166	 35.74	-1	4216793..4217995	-	400	73670726	-	Mbar_A3280	-	hypothetical protein
3167	 31.70	-2	4218274..4218825	+	183	73670727	-	Mbar_A3281	-	hypothetical protein
3168	 46.59	+1	4219687..4219965	+	92	73670728	-	Mbar_A3282	-	acylphosphatase
3169	 44.06	0	4220085..4221650	-	521	73670729	-	Mbar_A3283	-	putative phosphoglycerate mutase
3170	 36.13	-1	4222723..4223151	-	142	73670730	-	Mbar_A3284	-	hypothetical protein
3171	 46.35	0	4224013..4224642	+	209	73670731	-	Mbar_A3285	-	AraC family transcriptional regulator
3172	 39.11	0	4224658..4225107	+	149	73670732	-	Mbar_A3286	-	acetyltransferase
3173	 49.39	+1	4225517..4226338	-	273	73670733	-	Mbar_A3287	-	nitroreductase
3174	 40.56	0	4226485..4227204	-	239	73670734	-	Mbar_A3288	-	hypothetical protein
3175	 42.86	0	4227654..4228577	-	307	73670735	-	Mbar_A3289	-	hypothetical protein
3176	 31.17	-2	4229014..4230078	+	354	73670736	-	Mbar_A3290	-	transposase, putative
3177	 47.47	+1	4230101..4230991	-	296	73670737	-	Mbar_A3291	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3178	 43.20	0	4231171..4231464	-	97	73670738	-	Mbar_A3292	-	hypothetical protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.