IslandPathversion 1.0

IslandPath Analysis: Methanosarcina barkeri str. Fusaro



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.74 STD DEV: 4.78
Methanosarcina barkeri str. fusaro chromosome 1, complete sequence - 1..4837408
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
262	 42.22	0	322971..323555	-	194	73667821	-	Mbar_A0272	-	hypothetical protein
263	 43.13	0	323777..324838	-	353	73667822	-	Mbar_A0273	-	hypothetical protein
264	 41.40	0	324972..325157	+	61	73667823	-	Mbar_A0274	-	hypothetical protein
265	 42.68	0	325228..325944	+	238	73667824	-	Mbar_A0275	-	hypothetical protein
266	 42.83	0	326121..326720	-	199	73667825	-	Mbar_A0276	-	hypothetical protein
267	 41.11	0	327107..327466	+	119	73667826	-	Mbar_A0277	-	hypothetical protein
268	 45.04	0	328027..328590	-	187	73667827	-	Mbar_A0278	-	nucleoside-triphosphatase
269	 47.80	+1	328583..330220	-	545	73667828	-	Mbar_A0279	-	O-sialoglycoprotein endopeptidase/protein kinase
270	 45.23	0	330591..333632	-	1013	73667829	-	Mbar_A0280	-	TPR domain-containing protein
271	 43.33	0	334010..334159	-	49	73667830	-	Mbar_A0281	-	30S ribosomal protein S27ae
272	 44.12	0	334175..334480	-	101	73667831	rps24e	Mbar_A0282	-	30S ribosomal protein S24e
273	 45.41	0	334461..335048	-	195	73667832	-	Mbar_A0283	-	hypothetical protein
274	 46.77	+1	335050..335235	-	61	73667833	-	Mbar_A0284	-	DNA-directed RNA polymerase, subunit E''
275	 45.30	0	335253..335837	-	194	73667834	-	Mbar_A0285	-	DNA-directed RNA polymerase subunit E'
276	 44.72	0	335894..336262	-	122	73667835	-	Mbar_A0286	-	hypothetical protein
277	 45.67	0	336259..337539	-	426	73667836	-	Mbar_A0287	-	translation initiation factor IF-2 subunit gamma
278	 45.70	0	337834..338997	-	387	73667837	purP	Mbar_A0288	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
279	 39.81	0	339419..340159	-	246	73667838	-	Mbar_A0289	-	integral membrane protein
280	 40.09	0	340238..341095	-	285	73667839	-	Mbar_A0290	-	hypothetical protein
281	 46.87	+1	341921..342991	+	356	73667840	egsA	Mbar_A0291	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
282	 43.56	0	343426..343875	+	149	73667841	-	Mbar_A0292	-	hypothetical protein
283	 47.33	+1	343950..344585	+	211	73667842	-	Mbar_A0293	-	hypothetical protein
284	 44.95	0	344733..345920	-	395	73667843	-	Mbar_A0294	-	hypothetical protein
285	 43.58	0	346397..347401	-	334	73667844	-	Mbar_A0295	-	sulfate adenylyltransferase (ADP)
286	 44.81	0	347457..349268	-	603	73667845	-	Mbar_A0296	-	hypothetical protein
287	 45.17	0	349682..350509	-	275	73667846	-	Mbar_A0297	-	ABC transporter, ATP-binding protein
288	 39.78	0	350913..351269	+	118	73667847	-	Mbar_A0298	-	hypothetical protein
289	 40.40	0	351445..351939	-	164	73667848	-	Mbar_A0299	-	N-acetyltransferase
290	 44.74	0	352165..352839	+	224	73667849	-	Mbar_A0300	-	hypothetical protein
291	 36.57	-1	353461..354201	+	246	73667850	-	Mbar_A0301	-	CRISPR-associated Cas6 family protein
292	 37.33	0	354215..354814	+	199	73667851	-	Mbar_A0302	-	hypothetical protein
293	 40.64	0	355078..355857	+	259	73667852	-	Mbar_A0303	-	hypothetical protein
294	 36.36	-1	355894..356157	+	87	73667853	-	Mbar_A0304	-	hypothetical protein
295	 37.55	0	358540..358800	+	86	73667854	-	Mbar_A0305	-	hypothetical protein
296	 36.62	-1	359947..361317	+	456	73667855	-	Mbar_A0306	-	hypothetical protein
297	 40.92	0	361320..362321	+	333	73667856	-	Mbar_A0307	-	hypothetical protein
298	 39.10	0	362323..362946	+	207	73667857	-	Mbar_A0308	-	hypothetical protein
299	 35.44	-1	362969..365194	+	741	73667858	-	Mbar_A0309	-	hypothetical protein
300	 47.28	+1	365339..365632	+	97	73667859	-	Mbar_A0310	-	hypothetical protein
301	 46.38	0	365682..366248	+	188	73667860	-	Mbar_A0311	-	acetyltransferase related protein
302	 35.32	-1	366851..367102	+	83	73667861	-	Mbar_A0312	-	hypothetical protein
303	 33.07	-1	367104..367490	+	128	73667862	-	Mbar_A0313	-	hypothetical protein
304	 37.58	0	367762..368397	+	211	73667863	-	Mbar_A0314	-	putative methyltransferase
305	 40.85	0	368622..369473	+	283	73667864	ubiA	Mbar_A0315	-	prenyltransferase
306	 44.62	0	369845..370801	+	318	73667865	-	Mbar_A0316	-	hypothetical protein
307	 47.12	+1	371251..371649	-	132	73667866	-	Mbar_A0317	-	hypothetical protein
308	 36.55	-1	372426..372767	+	113	73667867	-	Mbar_A0318	-	hypothetical protein
309	 33.44	-1	374732..375646	-	304	73667868	-	Mbar_A0319	-	transposase
310	 47.13	+1	376145..376405	+	86	73667869	-	Mbar_A0320	-	hypothetical protein
311	 43.24	0	378705..380966	+	753	73667870	-	Mbar_A0321	-	amino acid permease
312	 46.36	0	381490..381750	+	86	73667871	-	Mbar_A0322	-	hypothetical protein
313	 44.44	0	382339..382509	+	56	73667872	-	Mbar_A0323	-	putative cation transport regulator
314	 39.31	0	383213..384082	+	289	73667873	-	Mbar_A0324	-	hypothetical protein
315	 40.62	0	384336..384815	+	159	73667874	-	Mbar_A0325	-	hypothetical protein
316	 42.86	0	385649..385879	+	76	73667875	-	Mbar_A0326	-	gas vesicle synthesis protein GvpA
317	 42.86	0	385913..386143	+	76	73667876	-	Mbar_A0327	-	gas vesicle synthesis protein GvpA
318	 43.29	0	386177..386407	+	76	73667877	-	Mbar_A0328	-	gas vesicle synthesis protein GvpA
319	 35.58	-1	386764..387075	+	103	73667878	-	Mbar_A0329	-	hypothetical protein
320	 37.14	0	387749..389062	+	437	73667879	-	Mbar_A0330	-	hypothetical protein
321	 33.91	-1	389243..389587	+	114	73667880	-	Mbar_A0331	-	hypothetical protein
322	 33.79	-1	389974..390633	+	219	73667881	-	Mbar_A0332	-	GvpF
323	 33.33	-1	390663..390914	+	83	73667882	-	Mbar_A0333	-	hypothetical protein
324	 34.63	-1	390889..391197	+	102	73667883	-	Mbar_A0334	-	hypothetical protein
325	 44.12	0	391493..391909	+	138	73667884	-	Mbar_A0335	-	hypothetical protein
326	 38.26	0	391992..392681	+	229	73667885	-	Mbar_A0336	-	hypothetical protein
327	 38.71	0	392665..393036	+	123	73667886	-	Mbar_A0337	-	hypothetical protein
328	 36.69	-1	393221..394024	+	267	73667887	-	Mbar_A0338	-	GvpL
329	 39.93	0	394021..394566	+	181	73667888	-	Mbar_A0339	-	hypothetical protein
330	 28.79	-2	395669..396064	+	131	73667889	-	Mbar_A0340	-	PadR family transcriptional regulator
331	 36.38	-1	396211..396801	+	196	73667890	-	Mbar_A0341	-	hypothetical protein
332	 45.80	0	397171..397611	+	146	73667891	-	Mbar_A0342	-	hypothetical protein
333	 41.80	0	398007..399944	-	645	73667892	-	Mbar_A0343	-	cadmium efflux ATPase
334	 47.84	+1	400369..400761	+	130	73667893	-	Mbar_A0344	-	sirohydrochlorin cobaltochelatase
335	 46.12	0	400788..402374	+	528	73667894	-	Mbar_A0345	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
336	 45.82	0	402810..403922	+	370	73667895	-	Mbar_A0346	-	hypothetical protein
337	 46.37	0	403960..404757	+	265	73667896	-	Mbar_A0347	-	nitrogenase iron protein subunit NifH
338	 48.35	+1	404859..406343	+	494	73667897	-	Mbar_A0348	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
339	 44.54	0	406711..407763	+	350	73667898	-	Mbar_A0349	-	tRNA splicing endonuclease
340	 44.95	0	407935..408330	+	131	73667899	-	Mbar_A0350	-	hypothetical protein
341	 44.93	0	408327..409637	+	436	73667900	-	Mbar_A0351	-	GTP-binding protein
342	 45.93	0	410500..411174	+	224	73667901	-	Mbar_A0352	-	isoleucyl-tRNA synthetase
343	 38.76	0	411346..411972	-	208	73667902	-	Mbar_A0353	-	ThiJ/PfpI family intracellular protease
344	 34.03	-1	412196..412624	-	142	73667903	-	Mbar_A0354	-	hypothetical protein
345	 34.74	-1	413474..415111	-	545	73667904	-	Mbar_A0355	-	transposase
346	 40.84	0	415576..415908	+	110	73667905	-	Mbar_A0356	-	hypothetical protein
347	 36.51	-1	416338..416526	-	62	73667906	-	Mbar_A0357	-	hypothetical protein
348	 41.60	0	416848..417210	+	120	73667907	-	Mbar_A0358	-	hypothetical protein
349	 45.35	0	417639..419969	+	776	73667908	-	Mbar_A0359	-	DNA repair protein
350	 44.81	0	419966..423190	+	1074	73667909	-	Mbar_A0360	-	chromosome segregation protein
351	 40.18	0	423336..424124	-	262	73667910	-	Mbar_A0361	-	hypothetical protein
352	 42.54	0	424694..425410	-	238	73667911	-	Mbar_A0362	-	hypothetical protein
353	 47.77	+1	425471..426322	-	283	73667912	-	Mbar_A0363	-	ribose-phosphate pyrophosphokinase
354	 46.37	0	426399..426866	-	155	73667913	moaC	Mbar_A0364	-	putative molybdenum cofactor biosynthesis protein C
355	 37.10	0	427137..427322	-	61	73667914	-	Mbar_A0365	-	hypothetical protein
356	 48.11	+1	427403..428911	-	502	73667915	-	Mbar_A0366	-	putative sugar kinase
357	 46.90	+1	429393..430859	+	488	73667916	-	Mbar_A0367	-	hypothetical protein
358	 42.41	0	431073..433583	-	836	73667917	-	Mbar_A0368	-	oligosaccharyl transferase
359	 38.98	0	434472..435569	+	365	73667918	-	Mbar_A0369	-	mannosyltransferase
360	 32.94	-1	435660..436427	+	255	73667919	-	Mbar_A0370	-	putative ABC-2 type transport system permease protein
361	 38.77	0	436452..437684	+	410	73667920	-	Mbar_A0371	-	putative ABC-2 type transport system ATP-binding protein
41.74	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.